A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

A

abort() - Static method in class ij.Macro
Aborts the currently running macro or any plugin using IJ.run().
abort() - Static method in class ij.macro.Interpreter
Aborts currently running macro.
abortPaste() - Method in class ij.gui.Roi
 
ABOUT_MENU - Static variable in class ij.Menus
 
AboutBox - Class in ij.plugin
This plugin implements the Help/About ImageJ command by opening the about.jpg in ij.jar, scaling it 400% and adding some text.
AboutBox() - Constructor for class ij.plugin.AboutBox
 
ABS - Static variable in interface ij.macro.MacroConstants
 
accept(File, String) - Method in class ij.plugin.Compiler
 
ACOS - Static variable in interface ij.macro.MacroConstants
 
actionPerformed(ActionEvent) - Method in class ij.gui.GenericDialog
 
actionPerformed(ActionEvent) - Method in class ij.gui.HistogramWindow
 
actionPerformed(ActionEvent) - Method in class ij.gui.HTMLDialog
 
actionPerformed(ActionEvent) - Method in class ij.gui.MessageDialog
 
actionPerformed(ActionEvent) - Method in class ij.gui.PlotWindow
 
actionPerformed(ActionEvent) - Method in class ij.gui.SaveChangesDialog
 
actionPerformed(ActionEvent) - Method in class ij.gui.StackWindow
 
actionPerformed(ActionEvent) - Method in class ij.gui.YesNoCancelDialog
 
actionPerformed(ActionEvent) - Method in class ij.ImageJ
Handle menu events.
actionPerformed(ActionEvent) - Method in class ij.plugin.filter.Calibrator
 
actionPerformed(ActionEvent) - Method in class ij.plugin.filter.Convolver
 
actionPerformed(ActionEvent) - Method in class ij.plugin.frame.ContrastAdjuster
 
actionPerformed(ActionEvent) - Method in class ij.plugin.frame.Editor
 
actionPerformed(ActionEvent) - Method in class ij.plugin.frame.Fitter
 
actionPerformed(ActionEvent) - Method in class ij.plugin.frame.Recorder
 
actionPerformed(ActionEvent) - Method in class ij.plugin.frame.RoiManager
 
actionPerformed(ActionEvent) - Method in class ij.plugin.frame.ThresholdAdjuster
 
actionPerformed(ActionEvent) - Method in class ij.plugin.LUT_Editor
 
actionPerformed(ActionEvent) - Method in class ij.plugin.MacroInstaller
 
actionPerformed(ActionEvent) - Method in class ij.text.TextPanel
 
actionPerformed(ActionEvent) - Method in class ij.text.TextWindow
 
add(ImageProcessor, double) - Method in class ij.plugin.filter.SaltAndPepper
 
ADD - Static variable in interface ij.process.Blitter
dst=dst+src
add(int) - Method in class ij.process.FloatProcessor
 
add(double) - Method in class ij.process.FloatProcessor
 
add(int) - Method in class ij.process.ImageProcessor
Adds 'value' to each pixel in the image or ROI.
add(double) - Method in class ij.process.ImageProcessor
Adds 'value' to each pixel in the image or ROI.
add(int) - Method in class ij.process.ShortProcessor
 
add(double) - Method in class ij.process.ShortProcessor
 
add(Object) - Method in interface nom.tam.util.Cursor
Add an unkeyed element to the collection.
add(Object, Object) - Method in interface nom.tam.util.Cursor
Add a keyed element to the collection.
add(Object) - Method in class nom.tam.util.HashedList
Add an element to the end of the list.
add(Object, Object) - Method in class nom.tam.util.HashedList
Add a keyed element to the end of the list.
add(int, Object, Object) - Method in class nom.tam.util.HashedList
Add an element to the list.
add(String, String) - Static method in class skyview.executive.Settings
Add a setting to a list -- but only if it is not already in the list.
add(Transformer) - Method in class skyview.geometry.Converter
Add a component to the transformation
add(Rotater) - Method in class skyview.geometry.Rotater
Add an additional rotation to the current rotation.
add(Scaler) - Method in class skyview.geometry.Scaler
Add a second affine transformation to this one and return the composite transformation.
add(int) - Method in class skyview.util.SmartIntArray
add element (integer) to array , check size and increase it if necessary
addAll(Collection) - Method in class nom.tam.util.HashedList
Add another collection to this one list.
addArgs(String[]) - Static method in class skyview.executive.Settings
Add settings from a list of arguments.
addBatchModeImage(ImagePlus) - Static method in class ij.macro.Interpreter
 
addChar(char) - Method in class ij.gui.TextRoi
Adds the specified character to the end of the text string.
addCheckbox(String, boolean) - Method in class ij.gui.GenericDialog
Adds a checkbox.
addCheckboxGroup(int, int, String[], boolean[]) - Method in class ij.gui.GenericDialog
Adds a group of checkboxs using a grid layout.
addChoice(String, String[], String) - Method in class ij.gui.GenericDialog
Adds a popup menu.
addColumn(Object) - Method in class nom.tam.fits.AsciiTable
Add a row to the table.
addColumn(Object, int) - Method in class nom.tam.fits.AsciiTable
This version of addColumn allows the user to override the default length associated with each column type.
addColumn(Object) - Method in class nom.tam.fits.AsciiTableHDU
Add a column
addColumn(Object) - Method in class nom.tam.fits.BinaryTable
Add a column to the end of a table.
addColumn(Object) - Method in class nom.tam.fits.BinaryTableHDU
Add a column without any associated header information.
addColumn(Object) - Method in interface nom.tam.fits.TableData
 
addColumn(Object) - Method in class nom.tam.fits.TableHDU
 
addColumn(Object, int) - Method in class nom.tam.util.ColumnTable
Add a column
addCriterion(String, String, String) - Method in class skyview.vo.ConeQuerier
 
addErrorBars(float[]) - Method in class ij.gui.Plot
Adds error bars to the plot.
addErrorBars(double[]) - Method in class ij.gui.Plot
Adds error bars to the plot.
addErrorBars(float[]) - Method in class ij.gui.PlotWindow
Adds error bars to the plot.
addFlattenedColumn(Object, int[]) - Method in class nom.tam.fits.BinaryTable
Add a column where the data is already flattened.
addHDU(BasicHDU) - Method in class nom.tam.fits.Fits
Add an HDU to the Fits object.
addImageListener(ImageListener) - Static method in class ij.ImagePlus
 
addKeyListener(KeyListener) - Method in class ij.text.TextPanel
Unused keyPressed events will be passed to 'listener'.
addLabel(double, double, String) - Method in class ij.gui.Plot
Draws text at the specified location, where (0,0) is the upper left corner of the the plot frame and (1,1) is the lower right corner.
addLabel(double, double, String) - Method in class ij.gui.PlotWindow
Draws a label.
addLabel(String, String) - Method in class ij.measure.ResultsTable
Adds a label to the beginning of the current row.
addLayoutComponent(String, Component) - Method in class ij.gui.ImageLayout
Not used by this class.
addLine(HeaderCard) - Method in class nom.tam.fits.Header
Add a card image to the header.
addLine(String) - Method in class nom.tam.fits.Header
Add a card image to the header.
addMacroTool(String, MacroInstaller, int) - Method in class ij.gui.Toolbar
Used by the MacroInstaller class to install macro tools.
addMessage(String) - Method in class ij.gui.GenericDialog
Adds a message consisting of one or more lines of text.
addNotify() - Method in class ij.gui.MultiLineLabel
 
addNumericField(String, double, int) - Method in class ij.gui.GenericDialog
Adds a numeric field.
addNumericField(String, double, int, int, String) - Method in class ij.gui.GenericDialog
Adds a numeric field.
addOffset() - Method in class ij.gui.PolygonRoi
 
addOpenRecentItem(String) - Static method in class ij.Menus
Adds a file path to the beginning of the File/Open Recent submenu.
addOrSubtract() - Method in class ij.gui.Roi
Called by IJ.doWand(), IJ.makeRectangle(), IJ.makeOval() and the makeSelection() macro function when the shift or alt key is down to to add to or subtract from an existing selection.
addPadding(int) - Static method in class nom.tam.fits.FitsUtil
Total size of blocked FITS element
addPanel(Panel) - Method in class ij.gui.GenericDialog
Adds a Panel to the dialog.
addPanel(Panel, int, Insets) - Method in class ij.gui.GenericDialog
Adds a Panel to the dialog with custom contraint and insets.
addPoint(int, int) - Method in class ij.gui.PointRoi
Adds a point to this selection and return the result.
addPointer(Object) - Method in class nom.tam.util.ColumnTable
 
addPoints(float[], float[], int) - Method in class ij.gui.Plot
Adds a set of points to the plot or adds a curve if shape is set to LINE.
addPoints(double[], double[], int) - Method in class ij.gui.Plot
Adds a set of points to the plot using double arrays.
addPoints(float[], float[], int) - Method in class ij.gui.PlotWindow
Adds a set of points to the plot or adds a curve if shape is set to LINE.
addPoints(double[], double[], int) - Method in class ij.gui.PlotWindow
Adds a set of points to the plot using double arrays.
addRow(Object[]) - Method in class nom.tam.fits.AsciiTable
Add a row to the FITS table.
addRow(Object[]) - Method in class nom.tam.fits.BinaryTable
Add a row at the end of the table.
addRow(Object[]) - Method in interface nom.tam.fits.TableData
 
addRow(Object[]) - Method in class nom.tam.fits.TableHDU
 
addRow(Object[]) - Method in class nom.tam.util.ColumnTable
Add a row to the table.
addSlice(String, Object) - Method in class ij.ImageStack
Adds an image in the forma of a pixel array to the end of the stack.
addSlice(String, ImageProcessor) - Method in class ij.ImageStack
Adds the image in 'ip' to the end of the stack.
addSlice(String, ImageProcessor, int) - Method in class ij.ImageStack
Adds the image in 'ip' to the stack following slice 'n'.
addSlider(String, double, double, double) - Method in class ij.gui.GenericDialog
 
addStringField(String, String) - Method in class ij.gui.GenericDialog
Adds an 8 column text field.
addStringField(String, String, int) - Method in class ij.gui.GenericDialog
Adds a text field.
addTextAreas(String, String, int, int) - Method in class ij.gui.GenericDialog
Adds one or two (side by side) text areas.
addTool(String) - Method in class ij.gui.Toolbar
Enables the unused tool between the text and zoom tools.
addUnsignedShortSlice(String, Object) - Method in class ij.ImageStack
Obsolete.
addValue(int, double) - Method in class ij.measure.ResultsTable
Adds a value to the end of the given column.
addValue(String, double) - Method in class ij.measure.ResultsTable
Adds a value to the end of the given column.
addValue(String, boolean, String) - Method in class nom.tam.fits.BasicHDU
Add information to the header
addValue(String, int, String) - Method in class nom.tam.fits.BasicHDU
 
addValue(String, double, String) - Method in class nom.tam.fits.BasicHDU
 
addValue(String, String, String) - Method in class nom.tam.fits.BasicHDU
 
addValue(String, boolean, String) - Method in class nom.tam.fits.Header
Add or replace a key with the given boolean value and comment.
addValue(String, double, String) - Method in class nom.tam.fits.Header
Add or replace a key with the given double value and comment.
addValue(String, String, String) - Method in class nom.tam.fits.Header
Add or replace a key with the given string value and comment.
addValue(String, long, String) - Method in class nom.tam.fits.Header
Add or replace a key with the given long value and comment.
addWindow(Frame) - Static method in class ij.WindowManager
Adds the specified window to the Window menu.
adjustCoordX(double) - Static method in class skyview.util.Utilities
Ensure that a value is in the region -PI to PI.
adjustCoordY(double) - Static method in class skyview.util.Utilities
Ensure that a value is in the approrpiate range from -PI/2 to PI/2.
adjustmentValueChanged(AdjustmentEvent) - Method in class ij.gui.ColorChooser
 
adjustmentValueChanged(AdjustmentEvent) - Method in class ij.gui.GenericDialog
 
adjustmentValueChanged(AdjustmentEvent) - Method in class ij.gui.StackWindow
 
adjustmentValueChanged(AdjustmentEvent) - Method in class ij.plugin.frame.ContrastAdjuster
 
adjustmentValueChanged(AdjustmentEvent) - Method in class ij.plugin.frame.LineWidthAdjuster
 
adjustmentValueChanged(AdjustmentEvent) - Method in class ij.plugin.frame.ThresholdAdjuster
 
adjustmentValueChanged(AdjustmentEvent) - Method in class ij.text.TextPanel
 
AitProjecter - Class in skyview.geometry.projecter
This class implements the AIT (Hammer-Aitov) projection.
AitProjecter() - Constructor for class skyview.geometry.projecter.AitProjecter
 
AitProjecter.AitDeprojecter - Class in skyview.geometry.projecter
 
AitProjecter.AitDeprojecter() - Constructor for class skyview.geometry.projecter.AitProjecter.AitDeprojecter
 
alignFill(byte[], int, int) - Method in class nom.tam.util.ByteFormatter
Fill the buffer with blanks to align a field.
altKeyDown() - Static method in class ij.IJ
Returns true if the alt key is down.
analyze(ImagePlus) - Method in class ij.plugin.filter.LineGraphAnalyzer
Uses ImageJ's particle analyzer to extract a set of coordinate pairs from a digitized line graph.
analyze(ImagePlus) - Method in class ij.plugin.filter.ParticleAnalyzer
Performs particle analysis on the specified image.
analyze(ImagePlus, ImageProcessor) - Method in class ij.plugin.filter.ParticleAnalyzer
Performs particle analysis on the specified ImagePlus and ImageProcessor.
Analyzer - Class in ij.plugin.filter
This plugin implements ImageJ's Analyze/Measure and Analyze/Set Measurements commands.
Analyzer() - Constructor for class ij.plugin.filter.Analyzer
 
Analyzer(ImagePlus) - Constructor for class ij.plugin.filter.Analyzer
Constructs a new Analyzer using the specified ImagePlus object and the system-wide measurement options and results table.
Analyzer(ImagePlus, int, ResultsTable) - Constructor for class ij.plugin.filter.Analyzer
Construct a new Analyzer using an ImagePlus object and private measurement options and results table.
analyzer - Variable in class ij.plugin.filter.ParticleAnalyzer
 
and(ShapeRoi) - Method in class ij.gui.ShapeRoi
Unary intersection operator.
AND - Static variable in interface ij.process.Blitter
dst=dst AND src
and(int) - Method in class ij.process.FloatProcessor
 
and(int) - Method in class ij.process.ImageProcessor
Binary AND of each pixel in the image or ROI with 'value'.
and(int) - Method in class ij.process.ShortProcessor
 
ANGLE - Static variable in class ij.gui.Roi
 
ANGLE - Static variable in class ij.gui.Toolbar
 
ANGLE - Static variable in class ij.measure.ResultsTable
 
angle - Variable in class ij.process.EllipseFitter
Angle in degrees
angle - Variable in class ij.process.ImageStatistics
Angle in degrees of fitted ellipse
AngScale - Class in skyview.data
Find an appropriate delta to use for getting grid intervals.
AngScale() - Constructor for class skyview.data.AngScale
 
angstromSymbol - Static variable in class ij.IJ
 
angularDistance(double, double, double, double) - Static method in class skyview.util.Utilities
Calculates angular distance between two points on a sphere.
Animator - Class in ij.plugin
This plugin animates stacks.
Animator() - Constructor for class ij.plugin.Animator
 
antialiasedText - Static variable in class ij.Prefs
Display antialiased text
antialiasedText - Variable in class ij.process.ImageProcessor
 
append(String) - Method in class ij.text.TextPanel
Adds one or more lines to the end of this TextPanel.
append(String) - Method in class ij.text.TextWindow
Adds one or lines of text to the window.
appendLine(String) - Method in class ij.text.TextPanel
Adds a single line to the end of this TextPanel.
applyLut() - Method in class ij.process.ByteProcessor
 
applyTable(int[]) - Method in class ij.process.ByteProcessor
 
applyTable(int[]) - Method in class ij.process.ColorProcessor
 
applyTable(int[], int) - Method in class ij.process.ColorProcessor
 
applyTable(int[]) - Method in class ij.process.FloatProcessor
 
applyTable(int[]) - Method in class ij.process.ImageProcessor
Transforms the image or ROI using a lookup table.
applyTable(int[]) - Method in class ij.process.ShortProcessor
Transforms the pixel data using a 65536 entry lookup table.
applyTable(int[]) - Method in class ij.process.StackProcessor
 
AREA - Static variable in interface ij.measure.Measurements
 
AREA - Static variable in class ij.measure.ResultsTable
 
area - Variable in class ij.process.ImageStatistics
 
AREA_FRACTION - Static variable in interface ij.measure.Measurements
 
AREA_FRACTION - Static variable in class ij.measure.ResultsTable
 
areaFraction - Variable in class ij.process.ImageStatistics
 
ARGB - Static variable in class ij.io.FileInfo
32-bit interleaved ARGB.
ARRAY - Static variable in interface ij.macro.MacroConstants
 
ARRAY_FUNCTION - Static variable in interface ij.macro.MacroConstants
 
ArrayDataInput - Interface in nom.tam.util
 
ArrayDataOutput - Interface in nom.tam.util
 
arrayDescription(Object) - Static method in class nom.tam.util.ArrayFuncs
Generate a description of an array (presumed rectangular).
ArrayFuncs - Class in nom.tam.util
This is a package of static functions which perform computations on arrays.
ArrayFuncs() - Constructor for class nom.tam.util.ArrayFuncs
 
arrayFunctionIDs - Static variable in interface ij.macro.MacroConstants
 
arrayFunctions - Static variable in interface ij.macro.MacroConstants
 
AsciiTable - Class in nom.tam.fits
An ASCII table.
AsciiTable(Header) - Constructor for class nom.tam.fits.AsciiTable
Create an ASCII table given a header
AsciiTable() - Constructor for class nom.tam.fits.AsciiTable
Create an empty ASCII table
AsciiTableHDU - Class in nom.tam.fits
FITS ASCII table header/data unit
AsciiTableHDU(Header, Data) - Constructor for class nom.tam.fits.AsciiTableHDU
Create an ascii table header/data unit.
ASIN - Static variable in interface ij.macro.MacroConstants
 
ATAN - Static variable in interface ij.macro.MacroConstants
 
ATAN2 - Static variable in interface ij.macro.MacroConstants
 
AUTO_UPDATE - Static variable in interface ij.macro.MacroConstants
 
autoClose - Static variable in class ij.gui.PlotWindow
Automatically close window after saving values.
autoOutline(int, int) - Method in class ij.gui.Wand
Traces the boundary of an area of uniform color, where 'startX' and 'startY' are somewhere inside the area.
autoOutline(int, int, double, double) - Method in class ij.gui.Wand
Traces an object defined by lower and upper threshold values.
autoOutline(int, int, int, int) - Method in class ij.gui.Wand
This is a variation of autoOutline that uses int threshold arguments.
autotest() - Static method in class nom.tam.fits.FitsDate
 
autoThreshold() - Method in class ij.process.ColorProcessor
 
autoThreshold() - Method in class ij.process.FloatProcessor
Not implemented.
autoThreshold() - Method in class ij.process.ImageProcessor
Converts the image to binary using an automatically determined threshold.
AVERAGE - Static variable in interface ij.process.Blitter
dst=(dst+src)/2
average3dData(double[][]) - Static method in class skyview.util.Utilities
Average a 2-D array over it's first dimension.
AVG_METHOD - Static variable in class ij.plugin.ZProjector
 
AVIWriter - Class in ij.plugin.filter
This plugin saves stacks in AVI format.
AVIWriter() - Constructor for class ij.plugin.filter.AVIWriter
 

B

B1950 - Static variable in class skyview.geometry.CoordinateSystem
Standard B1950 coordinates
backgroundColor - Static variable in class ij.ImageJ
 
backgroundIsZero - Variable in class ij.plugin.filter.BinaryFiller
 
BackgroundSubtracter - Class in ij.plugin.filter
Implements ImageJ's Subtract Background command.
BackgroundSubtracter() - Constructor for class ij.plugin.filter.BackgroundSubtracter
 
backup - Variable in class skyview.geometry.sampler.ComboSampler
 
BadHeaderException - Exception in nom.tam.fits
This exception indicates that an error was detected while parsing a FITS header record.
BadHeaderException() - Constructor for exception nom.tam.fits.BadHeaderException
 
BadHeaderException(String) - Constructor for exception nom.tam.fits.BadHeaderException
 
BARG - Static variable in class ij.io.FileInfo
32-bit interleaved BARG (MCID).
baseCM - Variable in class ij.process.ImageProcessor
 
BasicHDU - Class in nom.tam.fits
This abstract class is the parent of all HDU types.
BasicHDU() - Constructor for class nom.tam.fits.BasicHDU
 
BCOLOR - Static variable in class ij.Prefs
 
beep() - Static method in class ij.IJ
Emits an audio beep.
BEEP - Static variable in interface ij.macro.MacroConstants
 
Benchmark - Class in ij.plugin.filter
Implements the Plugins/Utilities/Run Benchmark command.
Benchmark() - Constructor for class ij.plugin.filter.Benchmark
 
BesselianCoordinateSystem - Class in skyview.geometry.csys
This class implements Besselian coordinate systems.
BesselianCoordinateSystem(double) - Constructor for class skyview.geometry.csys.BesselianCoordinateSystem
Get a CoordinateSystem of a given epoch.
BesselianDistorter - Class in skyview.geometry.spheredistorter
This class implements the distortion of Besselian coordinate systems.
BesselianDistorter() - Constructor for class skyview.geometry.spheredistorter.BesselianDistorter
 
BesselianDistorter.BesselianInverseDistorter - Class in skyview.geometry.spheredistorter
This inner class defines the inverse distortion to the enclosing Besselian distorter.
BesselianDistorter.BesselianInverseDistorter() - Constructor for class skyview.geometry.spheredistorter.BesselianDistorter.BesselianInverseDistorter
 
bestFit(int, boolean[]) - Method in class skyview.geometry.imagefinder.Border
Find the best image to use for a given unit vector.
BGR - Static variable in class ij.io.FileInfo
24-bit interleaved BGR.
bin0 - Variable in class skyview.executive.Imager
The beginning of the first pixel in energy space.
Binary - Class in ij.plugin.filter
Implements the commands in the Process/Binary submenu.
Binary() - Constructor for class ij.plugin.filter.Binary
 
BinaryFiller - Class in ij.plugin.filter
Binary Fill (Process/Binary/Fill) by Gabriel Landini, G.Landini at bham.ac.uk.
BinaryFiller() - Constructor for class ij.plugin.filter.BinaryFiller
 
BinaryProcessor - Class in ij.process
This class processes binary images.
BinaryProcessor(ByteProcessor) - Constructor for class ij.process.BinaryProcessor
Creates a BinaryProcessor from a ByteProcessor.
BinaryTable - Class in nom.tam.fits
This class defines the methods for accessing FITS binary table data.
BinaryTable() - Constructor for class nom.tam.fits.BinaryTable
Create a null binary table data segment.
BinaryTable(Header) - Constructor for class nom.tam.fits.BinaryTable
Create a binary table from given header information.
BinaryTable(Object[][]) - Constructor for class nom.tam.fits.BinaryTable
Create a binary table from existing data in row order.
BinaryTable(Object[]) - Constructor for class nom.tam.fits.BinaryTable
Create a binary table from existing data in column order.
BinaryTable(ColumnTable) - Constructor for class nom.tam.fits.BinaryTable
Create a binary table from an existing ColumnTable
BinaryTableHDU - Class in nom.tam.fits
FITS binary table header/data unit
BinaryTableHDU(Header, Data) - Constructor for class nom.tam.fits.BinaryTableHDU
 
binSize - Variable in class ij.process.ImageStatistics
 
BIT_DEPTH - Static variable in interface ij.macro.MacroConstants
 
BitBuffer - Class in ij.io
A class for reading arbitrary numbers of bits from a byte array.
BitBuffer(byte[]) - Constructor for class ij.io.BitBuffer
 
BITMAP - Static variable in class ij.io.FileInfo
1-bit black and white.
BITPIX_BYTE - Static variable in class nom.tam.fits.BasicHDU
 
BITPIX_DOUBLE - Static variable in class nom.tam.fits.BasicHDU
 
BITPIX_FLOAT - Static variable in class nom.tam.fits.BasicHDU
 
BITPIX_INT - Static variable in class nom.tam.fits.BasicHDU
 
BITPIX_LONG - Static variable in class nom.tam.fits.BasicHDU
 
BITPIX_SHORT - Static variable in class nom.tam.fits.BasicHDU
 
BITS_PER_SAMPLE - Static variable in class ij.io.TiffDecoder
 
BLACK - Static variable in class ij.process.ImageProcessor
Value of pixels included in masks.
BLACK_AND_WHITE_LUT - Static variable in class ij.process.ImageProcessor
 
blackBackground - Static variable in class ij.Prefs
Backgound is black in binary images
blackCanvas - Static variable in class ij.Prefs
Use black image border.
Blitter - Interface in ij.process
ImageJ bit blitting classes must implement this interface.
blue - Variable in class ij.plugin.filter.RGBStackSplitter
These are the three stacks created by the split(ImageStack) method.
blues - Variable in class ij.io.FileInfo
 
blur(ImageProcessor, double) - Method in class ij.plugin.filter.GaussianBlur
 
blur(ImageProcessor, int) - Method in class ij.plugin.filter.RankFilters
 
blurRGB(ImageProcessor, float[]) - Method in class ij.plugin.filter.GaussianBlur
 
bLUT1 - Variable in class ij.process.ImageProcessor
 
bLUT2 - Variable in class ij.process.ImageProcessor
 
BMP - Static variable in class ij.io.FileInfo
 
BMP - Static variable in class ij.io.Opener
 
BMP_Reader - Class in ij.plugin
This plugin reads BMP files.
BMP_Reader() - Constructor for class ij.plugin.BMP_Reader
 
BMP_Writer - Class in ij.plugin
Implements the File/Save As/BMP command.
BMP_Writer() - Constructor for class ij.plugin.BMP_Writer
 
boldFont - Variable in class ij.process.ImageProcessor
 
BOOLEAN_INDEX - Static variable in interface nom.tam.util.PrimitiveInfo
 
Border - Class in skyview.geometry.imagefinder
This class finds the best images to be used for sampling using a recursive rectangle algorithm.
Border() - Constructor for class skyview.geometry.imagefinder.Border
 
BoundaryAverage - Class in skyview.geometry.deedger
This class adjusts the 0 point for data taken from multiple images to try to minize edge effects.
BoundaryAverage() - Constructor for class skyview.geometry.deedger.BoundaryAverage
 
BoundaryMedian - Class in skyview.geometry.deedger
This class adjusts the 0 point for data taken from multiple images to try to minize edge effects.
BoundaryMedian() - Constructor for class skyview.geometry.deedger.BoundaryMedian
 
BoundaryMedianDSS2 - Class in skyview.geometry.deedger
This class adjusts the 0 point for data taken from multiple images to try to minize edge effects.
BoundaryMedianDSS2() - Constructor for class skyview.geometry.deedger.BoundaryMedianDSS2
 
bounds - Variable in class skyview.geometry.Sampler
This gives the minX,maxX, minY,maxY pixel values for the current output image.
BOX - Static variable in class ij.gui.Plot
Display points using an box-shaped mark.
BOX - Static variable in class ij.gui.PlotWindow
Display points using an box-shaped mark.
brokenNewPixels() - Static method in class ij.IJ
Returns true if animated MemoryImageSources do not work correctly.
BrowserLauncher - Class in ij.plugin
This plugin implements ImageJ's Help/ImageJ Web Site command.
BrowserLauncher() - Constructor for class ij.plugin.BrowserLauncher
This class should be never be instantiated; this just ensures so.
BufferedDataInputStream - Class in nom.tam.util
This class is intended for high performance I/O in scientific applications.
BufferedDataInputStream(InputStream) - Constructor for class nom.tam.util.BufferedDataInputStream
Use the BufferedInputStream constructor
BufferedDataInputStream(InputStream, int) - Constructor for class nom.tam.util.BufferedDataInputStream
Use the BufferedInputStream constructor
BufferedDataOutputStream - Class in nom.tam.util
This class is intended for high performance I/O in scientific applications.
BufferedDataOutputStream(OutputStream) - Constructor for class nom.tam.util.BufferedDataOutputStream
Use the BufferedOutputStream constructor
BufferedDataOutputStream(OutputStream, int) - Constructor for class nom.tam.util.BufferedDataOutputStream
Use the BufferedOutputStream constructor
BufferedFile - Class in nom.tam.util
 
BufferedFile(String) - Constructor for class nom.tam.util.BufferedFile
Create a read-only buffered file
BufferedFile(String, String) - Constructor for class nom.tam.util.BufferedFile
Create a buffered file with the given mode.
BufferedFile(String, String, int) - Constructor for class nom.tam.util.BufferedFile
Create a buffered file with the given mode and a specified buffer size.
buildControlDialog(int, int) - Method in class ij.plugin.ZProjector
Builds dialog to query users for projection parameters.
button - Variable in class ij.gui.MessageDialog
 
BYTE_INDEX - Static variable in interface nom.tam.util.PrimitiveInfo
 
byteArrayToStrings(byte[], int) - Static method in class nom.tam.fits.FitsUtil
Convert bytes to Strings
ByteBlitter - Class in ij.process
This class does bit blitting of byte images.
ByteBlitter(ByteProcessor) - Constructor for class ij.process.ByteBlitter
Constructs a ByteBlitter from a ByteProcessor.
ByteFormatter - Class in nom.tam.util
This class provides mechanisms for efficiently formatting numbers and Strings.
ByteFormatter() - Constructor for class nom.tam.util.ByteFormatter
 
ByteParser - Class in nom.tam.util
This class provides routines for efficient parsing of data stored in a byte array.
ByteParser(byte[]) - Constructor for class nom.tam.util.ByteParser
Construct a parser.
ByteProcessor - Class in ij.process
This is an 8-bit image and methods that operate on that image.
ByteProcessor(Image) - Constructor for class ij.process.ByteProcessor
Creates a ByteProcessor from an 8-bit, indexed color AWT Image.
ByteProcessor(int, int) - Constructor for class ij.process.ByteProcessor
Creates a blank ByteProcessor of the specified dimensions.
ByteProcessor(int, int, byte[], ColorModel) - Constructor for class ij.process.ByteProcessor
Creates a ByteProcessor from a pixel array and IndexColorModel.
ByteStatistics - Class in ij.process
8-bit image statistics, including histogram.
ByteStatistics(ImageProcessor) - Constructor for class ij.process.ByteStatistics
Construct an ImageStatistics object from a ByteProcessor using the standard measurement options (area, mean, mode, min and max) and no calibration.
ByteStatistics(ImageProcessor, int, Calibration) - Constructor for class ij.process.ByteStatistics
Constructs a ByteStatistics object from a ByteProcessor using the specified measurement and calibration.

C

c - Variable in class skyview.executive.Imager
The CoordinateSystem object for the output image.
c2hex(Color) - Static method in class ij.util.Tools
Converts a Color to an 7 byte hex string starting with '#'.
cache - Variable in class ij.io.PluginClassLoader
 
cachedMask - Variable in class ij.gui.Roi
 
CachingImageFactory - Class in skyview.survey
 
CachingImageFactory() - Constructor for class skyview.survey.CachingImageFactory
 
cal - Variable in class ij.gui.HistogramWindow
 
cal - Variable in class ij.process.ImageStatistics
 
calculate(String, ImagePlus, ImagePlus) - Method in class ij.plugin.ImageCalculator
 
CALCULATOR - Static variable in interface ij.macro.MacroConstants
 
CALIBRATE - Static variable in interface ij.macro.MacroConstants
 
calibrate(ImagePlus) - Method in class ij.plugin.filter.Calibrator
 
calibrated() - Method in class ij.measure.Calibration
Returns true if this image is density calibrated.
Calibration - Class in ij.measure
Calibration objects contain an image's spatial and density calibration data.
Calibration(ImagePlus) - Constructor for class ij.measure.Calibration
Constructs a new Calibration object using the default values.
Calibration() - Constructor for class ij.measure.Calibration
Constructs a new Calibration object using the default values.
CalibrationBar - Class in ij.plugin.filter
This plugin displays a calibration bar on the active image.
CalibrationBar() - Constructor for class ij.plugin.filter.CalibrationBar
 
calibrationFunction - Variable in class ij.io.FileInfo
 
Calibrator - Class in ij.plugin.filter
Implements the Analyze/Calibrate command.
Calibrator() - Constructor for class ij.plugin.filter.Calibrator
 
canBePrimary() - Method in class nom.tam.fits.ImageHDU
Indicate that Images can appear at the beginning of a FITS dataset
canBePrimary() - Method in class nom.tam.fits.RandomGroupsHDU
Indicate that a RandomGroupsHDU can come at the beginning of a FITS file.
CANCELED - Static variable in class ij.IJ
 
cancelPressed() - Method in class ij.gui.SaveChangesDialog
Returns true if the user dismissed dialog by pressing "Cancel".
cancelPressed() - Method in class ij.gui.YesNoCancelDialog
Returns true if the user dismissed dialog by pressing "Cancel".
cand - Variable in class skyview.executive.Imager
The candidate images for use in resampling
CanvasResizer - Class in ij.plugin
This plugin implements the Image/Adjust/Canvas Size command.
CanvasResizer() - Constructor for class ij.plugin.CanvasResizer
 
CarProjecter - Class in skyview.geometry.projecter
This class implements the Cartesian (rectangular) projection.
CarProjecter() - Constructor for class skyview.geometry.projecter.CarProjecter
 
CarProjecter.CarDeprojecter - Class in skyview.geometry.projecter
 
CarProjecter.CarDeprojecter() - Constructor for class skyview.geometry.projecter.CarProjecter.CarDeprojecter
 
CatalogPostProcessor - Class in skyview.vo
The CatalogPostProcessor is called to finish processing for catalog requests.
CatalogPostProcessor() - Constructor for class skyview.vo.CatalogPostProcessor
 
CatalogProcessor - Class in skyview.vo
 
CatalogProcessor() - Constructor for class skyview.vo.CatalogProcessor
 
center(Window) - Static method in class ij.gui.GUI
Positions the specified frame in the center of the screen.
center - Variable in class ij.gui.Roi
 
CENTER_JUSTIFY - Static variable in class ij.process.ImageProcessor
Center justify text.
CENTER_OF_MASS - Static variable in interface ij.measure.Measurements
 
centerNextImage() - Static method in class ij.gui.ImageWindow
Causes the next image to be opened to be centered on the screen and displayed without informational text above the image.
CENTROID - Static variable in interface ij.measure.Measurements
 
CHANGE_VALUES - Static variable in interface ij.macro.MacroConstants
 
changeFont(Font) - Method in class ij.gui.Plot
Changes the font.
changeFont(Font) - Method in class ij.gui.PlotWindow
Changes the font.
changes - Variable in class ij.ImagePlus
True if any changes have been made to this image.
CHAR_CODE_AT - Static variable in interface ij.macro.MacroConstants
 
CHAR_INDEX - Static variable in interface nom.tam.util.PrimitiveInfo
 
CHECK_AVAILABLE_MEMORY - Static variable in class ij.gui.NewImage
 
checkArrayConsistency(Object[], int[]) - Method in class nom.tam.util.ColumnTable
Check that the columns and sizes are consistent.
checkbox - Variable in class ij.gui.GenericDialog
 
checkBuf(int) - Method in class nom.tam.util.BufferedDataOutputStream
 
checkForDuplicateName - Static variable in class ij.WindowManager
 
checkNaNs - Variable in class skyview.geometry.imagefinder.Border
Do we wish to check that the input image does not have a NaN value?
checkURLEnd(String) - Static method in class skyview.vo.ConeQuerier
Make sure that URLs can be appended to
choice - Variable in class ij.gui.GenericDialog
 
CIRCLE - Static variable in class ij.gui.Plot
Display points using a circle 5 pixels in diameter.
CIRCLE - Static variable in class ij.gui.PlotWindow
Display points using a circle 5 pixels in diameter.
CIRCULARITY - Static variable in interface ij.measure.Measurements
 
CIRCULARITY - Static variable in class ij.measure.ResultsTable
 
ClassChecker - Class in ij.plugin
Checks for duplicate class files in the plugins directory and deletes older duplicates.
ClassChecker() - Constructor for class ij.plugin.ClassChecker
 
classes - Static variable in interface nom.tam.util.PrimitiveInfo
Classes of the primitives.
clear(ImageProcessor) - Method in class ij.plugin.filter.Filler
 
clear() - Method in class nom.tam.util.HashedList
Clear the collection
CLEAR_WORKSHEET - Static variable in class ij.plugin.filter.ParticleAnalyzer
Clear ImageJ console before starting.
clearData() - Method in class skyview.survey.DSSImage
Clear the data array
clearData() - Method in class skyview.survey.Image
Clear the data array
clearData() - Method in class skyview.survey.ProxyImage
Clear the data array
clearOutside(ImageProcessor) - Method in class ij.plugin.filter.Filler
 
clearSelection() - Method in class ij.text.TextPanel
Deletes the selected lines.
clipboard - Variable in class ij.gui.Roi
 
clipHeight - Variable in class ij.gui.Roi
 
ClipSampler - Class in skyview.geometry.sampler
The class implements a fast flux conserving resampling based on the Sutherland-Hodgman clipping algorithm.
ClipSampler() - Constructor for class skyview.geometry.sampler.ClipSampler
 
clipWidth - Variable in class ij.gui.Roi
 
clipX - Variable in class ij.gui.Roi
 
clipXMax - Variable in class ij.process.ImageProcessor
 
clipXMin - Variable in class ij.process.ImageProcessor
 
clipY - Variable in class ij.gui.Roi
 
clipYMax - Variable in class ij.process.ImageProcessor
 
clipYMin - Variable in class ij.process.ImageProcessor
 
clone() - Method in class ij.gui.PolygonRoi
Returns a copy of this PolygonRoi.
clone() - Method in class ij.gui.Roi
Returns a copy of this roi.
clone() - Method in class ij.gui.ShapeRoi
Returns a deep copy of this.
close() - Method in class ij.gui.ImageWindow
Removes this window from the window list and disposes of it.
close() - Method in class ij.gui.StackWindow
 
close() - Method in class ij.ImagePlus
Closes this image and sets the pixel arrays to null.
close() - Method in class ij.io.RandomAccessStream
 
CLOSE - Static variable in interface ij.macro.MacroConstants
 
close() - Method in class ij.plugin.frame.ContrastAdjuster
Overrides close() in PlugInFrame.
close() - Method in class ij.plugin.frame.Editor
Overrides close() in PlugInFrame.
close() - Method in class ij.plugin.frame.LineWidthAdjuster
Overrides close() in PlugInFrame.
close() - Method in class ij.plugin.frame.PasteController
 
close() - Method in class ij.plugin.frame.PlugInFrame
Closes this window.
close() - Method in class ij.plugin.frame.Recorder
 
close() - Method in class ij.plugin.frame.RoiManager
Overrides PlugInFrame.close().
close() - Method in class ij.plugin.frame.ThresholdAdjuster
Overrides close() in PlugInFrame.
close() - Method in class ij.text.TextWindow
 
close() - Method in interface nom.tam.util.ArrayDataInput
 
close() - Method in interface nom.tam.util.ArrayDataOutput
 
close() - Method in class nom.tam.util.BufferedFile
Close the file
closeAllWindows() - Static method in class ij.WindowManager
Closes all windows.
closed - Variable in class ij.gui.ImageWindow
 
cm - Variable in class ij.process.ImageProcessor
 
coefficients - Variable in class ij.io.FileInfo
 
COLOR8 - Static variable in class ij.io.FileInfo
8-bit unsigned integer with color lookup table.
COLOR_256 - Static variable in class ij.ImagePlus
8-bit indexed color
COLOR_MAP - Static variable in class ij.io.TiffDecoder
 
COLOR_RGB - Static variable in class ij.ImagePlus
32-bit RGB color
ColorBlitter - Class in ij.process
This class does bit blitting of RGB images.
ColorBlitter(ColorProcessor) - Constructor for class ij.process.ColorBlitter
Constructs a ColorBlitter from a ColorProcessor.
ColorChooser - Class in ij.gui
Displays a dialog that allows the user to select a color using three sliders.
ColorChooser(String, Color, boolean) - Constructor for class ij.gui.ColorChooser
Constructs a ColorChooser using the specified title and initial color.
ColorPicker - Class in ij.plugin
Implements the Image/Color/Color Picker command.
ColorPicker() - Constructor for class ij.plugin.ColorPicker
 
ColorProcessor - Class in ij.process
This is an 32-bit RGB image and methods that operate on that image..
ColorProcessor(Image) - Constructor for class ij.process.ColorProcessor
Creates a ColorProcessor from an AWT Image.
ColorProcessor(int, int) - Constructor for class ij.process.ColorProcessor
Creates a blank ColorProcessor of the specified dimensions.
ColorProcessor(int, int, int[]) - Constructor for class ij.process.ColorProcessor
Creates a ColorProcessor from a pixel array.
Colors - Class in ij.plugin
This plugin implements most of the Edit/Options/Colors command.
Colors() - Constructor for class ij.plugin.Colors
 
ColorStatistics - Class in ij.process
RGB image statistics, including histogram.
ColorStatistics(ImageProcessor) - Constructor for class ij.process.ColorStatistics
Construct an ImageStatistics object from a ColorProcessor using the standard measurement options (area, mean, mode, min and max).
ColorStatistics(ImageProcessor, int, Calibration) - Constructor for class ij.process.ColorStatistics
Constructs a ColorStatistics object from a ColorProcessor using the specified measurement options.
COLUMN_IN_USE - Static variable in class ij.measure.ResultsTable
 
COLUMN_NOT_FOUND - Static variable in class ij.measure.ResultsTable
 
columnExists(int) - Method in class ij.measure.ResultsTable
Returns true if the specified column exists and is not empty.
columnKeyStems() - Method in class nom.tam.fits.AsciiTableHDU
Return the keyword column stems for an ASCII table.
columnKeyStems() - Method in class nom.tam.fits.BinaryTableHDU
What are the standard column stems for a binary table?
columnKeyStems() - Method in class nom.tam.fits.TableHDU
Get the stems of the keywords that are associated with table columns.
ColumnTable - Class in nom.tam.util
A data table is conventionally considered to consist of rows and columns, where the structure within each column is constant, but different columns may have different structures.
ColumnTable(Object[], int[]) - Constructor for class nom.tam.util.ColumnTable
Create the object after checking consistency.
combo - Variable in class skyview.geometry.sampler.ComboSampler
 
ComboSampler - Class in skyview.geometry.sampler
This class uses two samplers.
ComboSampler() - Constructor for class skyview.geometry.sampler.ComboSampler
 
COMMAND_IN_USE - Static variable in class ij.Menus
 
COMMAND_NOT_FOUND - Static variable in class ij.Menus
 
commandInUse(String) - Static method in class ij.Menus
 
CommandLister - Class in ij.plugin
Lists ImageJ commands or keyboard shortcuts in a text window.
CommandLister() - Constructor for class ij.plugin.CommandLister
 
commandPrefix - Static variable in class ij.plugin.MacroInstaller
 
compare(Object, Object) - Method in class nom.tam.fits.HeaderOrder
Which order should the cards indexed by these keys be written out? This method assumes that the arguments are either the FITS Header keywords as strings, and some other type (or null) for comment style keywords.
Compiler - Class in ij.plugin
Compiles and runs plugins using the javac compiler.
Compiler() - Constructor for class ij.plugin.Compiler
 
Component - Interface in skyview
 
COMPOSITE - Static variable in class ij.gui.Roi
 
COMPOUND_FILTER - Static variable in class ij.Undo
 
COMPOUND_FILTER_DONE - Static variable in class ij.Undo
 
compression - Variable in class ij.io.FileInfo
 
COMPRESSION - Static variable in class ij.io.TiffDecoder
 
COMPRESSION_NONE - Static variable in class ij.io.FileInfo
 
COMPRESSION_UNKNOWN - Static variable in class ij.io.FileInfo
 
computeSize(Object) - Static method in class nom.tam.util.ArrayFuncs
Compute the size of an object.
ConeQuerier - Class in skyview.vo
This class queries a cone search service and returns the positions and IDs.
ConeQuerier(String, String, double, double, double) - Constructor for class skyview.vo.ConeQuerier
Build a cone querier using the base URL and cone search parameters.
ConeQuerier(String, String) - Constructor for class skyview.vo.ConeQuerier
Build a cone querier using the full URL.
conjugateMultiply(FHT) - Method in class ij.process.FHT
Returns the image resulting from the point by point Hartley conjugate multiplication of this image and the specified image.
constrain - Variable in class ij.gui.Roi
 
CONSTRUCTING - Static variable in class ij.gui.Roi
 
CONSUMED - Static variable in class skyview.geometry.imagefinder.Border
 
contains(int, int) - Method in class ij.gui.Line
 
contains(int, int) - Method in class ij.gui.OvalRoi
 
contains(int, int) - Method in class ij.gui.PolygonRoi
 
contains(int, int) - Method in class ij.gui.Roi
 
contains(int, int) - Method in class ij.gui.ShapeRoi
Checks whether the specified coordinates are inside a on this ROI's shape boundaries.
contains(Object) - Method in class nom.tam.util.HashedList
Does the HashedList contain this element?
containsAll(Collection) - Method in class nom.tam.util.HashedList
Does the HashedList contain all the elements of this other collection.
containsKey(String) - Method in class nom.tam.fits.Header
Tests if the specified keyword is present in this table.
containsKey(Object) - Method in class nom.tam.util.HashedList
Check if the key is included in the list
ContrastAdjuster - Class in ij.plugin.frame
This plugin implements the Brightness/Contrast, Window/level and Color Balance commands, all in the Image/Adjust sub-menu.
ContrastAdjuster() - Constructor for class ij.plugin.frame.ContrastAdjuster
 
ContrastEnhancer - Class in ij.plugin
Implements ImageJ's Process/Enhance Contrast command.
ContrastEnhancer() - Constructor for class ij.plugin.ContrastEnhancer
 
ControlPanel - Class in ij.plugin
ControlPanel.
ControlPanel() - Constructor for class ij.plugin.ControlPanel
 
convert(String) - Method in class ij.plugin.Converter
Converts the ImagePlus to the specified image type.
convert(int) - Method in class ij.process.MedianCut
Uses Heckbert's median-cut algorithm to divide the color space defined by "hist" into "maxcubes" cubes.
convertArray(Object, Class, boolean) - Static method in class nom.tam.util.ArrayFuncs
Convert an array to a specified type.
convertArray(Object, Class) - Static method in class nom.tam.util.ArrayFuncs
Convert an array to a specified type.
convertBack(ImageProcessor, ImageProcessor, int) - Method in class ij.plugin.filter.RankFilters
 
Converter - Class in ij.plugin
Implements the conversion commands in the Image/Type submenu.
Converter() - Constructor for class ij.plugin.Converter
 
Converter - Class in skyview.geometry
A converter applies a succession of transformations on the data
Converter() - Constructor for class skyview.geometry.Converter
 
convertGrayJpegTo8Bits(ImagePlus) - Static method in class ij.io.Opener
If this image is grayscale, convert it to 8-bits.
convertHSBToRGB() - Method in class ij.process.ImageConverter
Converts a 3-slice (hue, saturation, brightness) 8-bit stack to RGB.
convertImagesToStack() - Method in class ij.plugin.StackEditor
 
convertNotation(String) - Static method in class skyview.util.Utilities
Handle exponential notation.
convertRGBStackToRGB() - Method in class ij.process.ImageConverter
Converts a 2 or 3 slice 8-bit stack to RGB.
convertRGBtoIndexedColor(int) - Method in class ij.process.ImageConverter
Converts an RGB image to 8-bits indexed color.
convertShortcutToCode(String) - Static method in class ij.Menus
 
convertStackToImages(ImagePlus) - Method in class ij.plugin.StackEditor
 
convertToByte(boolean) - Method in class ij.process.ImageProcessor
Returns an 8-bit version of this image as a ByteProcessor.
convertToByte(int) - Method in class ij.process.MedianCut
This is a version of convert that returns a ByteProcessor.
convertToByte() - Method in class ij.process.TypeConverter
Converts processor to a ByteProcessor.
convertToCoords() - Method in class skyview.request.SourceCoordinates
convert user input string to coords
convertToFloat() - Method in class ij.process.ImageProcessor
Returns a 32-bit float version of this image as a FloatProcessor.
convertToFloat(float[]) - Method in class ij.process.TypeConverter
Converts processor to a FloatProcessor.
convertToGray16() - Method in class ij.process.ImageConverter
Converts this ImagePlus to 16-bit grayscale.
convertToGray16() - Method in class ij.process.StackConverter
Converts this Stack to 16-bit grayscale.
convertToGray32() - Method in class ij.process.ImageConverter
Converts this ImagePlus to 32-bit grayscale.
convertToGray32() - Method in class ij.process.StackConverter
Converts this Stack to 32-bit (float) grayscale.
convertToGray8() - Method in class ij.process.ImageConverter
Converts this ImagePlus to 8-bit grayscale.
convertToGray8() - Method in class ij.process.StackConverter
Converts this Stack to 8-bit grayscale.
convertToHSB() - Method in class ij.process.ImageConverter
Converts an RGB image to a HSB (hue, saturation and brightness) stack.
convertToIndexedColor(int) - Method in class ij.process.StackConverter
Converts the stack to 8-bits indexed color.
convertToRGB() - Method in class ij.process.ImageConverter
Converts this ImagePlus to RGB.
convertToRGB() - Method in class ij.process.ImageProcessor
Returns an RGB version of this image as a ColorProcessor.
convertToRGB() - Method in class ij.process.StackConverter
Converts the Stack to RGB.
convertToRGB() - Method in class ij.process.TypeConverter
Converts processor to a ColorProcessor.
convertToRGBStack() - Method in class ij.process.ImageConverter
Converts an RGB image to an RGB (red, green and blue) stack.
convertToShort(boolean) - Method in class ij.process.ImageProcessor
Returns a 16-bit version of this image as a ShortProcessor.
convertToShort() - Method in class ij.process.TypeConverter
Converts processor to a ShortProcessor.
convolve(ImageProcessor, float[], int, int) - Method in class ij.plugin.filter.Convolver
 
convolve(float[], int, int) - Method in class ij.process.ByteProcessor
Performs a convolution operation using the specified kernel.
convolve(float[], int, int) - Method in class ij.process.ColorProcessor
Performs a convolution operation using the specified kernel.
convolve(float[], int, int) - Method in class ij.process.FloatProcessor
Performs a convolution operation using the specified kernel.
convolve(float[], int, int) - Method in class ij.process.ImageProcessor
Performs a convolution operation using the specified kernel.
convolve(float[], int, int) - Method in class ij.process.ShortProcessor
Performs a convolution operation using the specified kernel.
convolve3x3(int[]) - Method in class ij.process.ByteProcessor
3x3 convolution contributed by Glynne Casteel.
convolve3x3(int[]) - Method in class ij.process.ColorProcessor
3x3 convolution contributed by Glynne Casteel.
convolve3x3(int[]) - Method in class ij.process.FloatProcessor
3x3 convolution contributed by Glynne Casteel.
convolve3x3(int[]) - Method in class ij.process.ImageProcessor
Convolves the image or ROI with the specified 3x3 integer convolution kernel.
convolve3x3(int[]) - Method in class ij.process.ShortProcessor
3x3 convolution contributed by Glynne Casteel.
convolveFloat(ImageProcessor, float[], int, int) - Method in class ij.plugin.filter.Convolver
Convolves the image ip with a kernel of width kw and height kh.
Convolver - Class in ij.plugin.filter
This plugin does convolutions on real images using user user defined kernels.
Convolver() - Constructor for class ij.plugin.filter.Convolver
 
convolveRGB(ImageProcessor, float[], int, int) - Method in class ij.plugin.filter.Convolver
 
coord(double[]) - Static method in class skyview.geometry.Util
Convert a unit vector to the corresponding coordinates.
coord(double[], double[]) - Static method in class skyview.geometry.Util
Convert a unit vector to the corresponding coordinates.
CoordinateFormatter - Class in skyview.data
 
CoordinateFormatter() - Constructor for class skyview.data.CoordinateFormatter
 
CoordinateSystem - Class in skyview.geometry
The class defines coordinate systems in terms of the operations needed to transform the standard coordinate system (currently J2000) to the coordinate system associated with the object.
CoordinateSystem() - Constructor for class skyview.geometry.CoordinateSystem
 
copy - Variable in class ij.gui.HistogramWindow
 
copy(boolean) - Method in class ij.gui.ImageWindow
Copies the current ROI to the clipboard.
copy(boolean) - Method in class ij.ImagePlus
Copies the contents of the current selection to the internal clipboard.
copy() - Method in class ij.measure.Calibration
Returns a clone of this object.
COPY - Static variable in interface ij.process.Blitter
dst=src
COPY_INVERTED - Static variable in interface ij.process.Blitter
dst=255-src (8-bits and RGB)
COPY_TRANSPARENT - Static variable in interface ij.process.Blitter
Copies with white pixels transparent.
copyArray(Object, Object) - Static method in class nom.tam.util.ArrayFuncs
Copy one array into another.
copyBits(ImageProcessor, int, int, int) - Method in interface ij.process.Blitter
Copies the image in 'src' to (x,y) using the specified mode.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ByteBlitter
Copies the byte image in 'ip' to (x,y) using the specified mode.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ByteProcessor
Copies the image contained in 'ip' to (xloc, yloc) using one of the transfer modes defined in the Blitter interface.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ColorBlitter
Copies the RGB image in 'ip' to (x,y) using the specified mode.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ColorProcessor
Copies the image contained in 'ip' to (xloc, yloc) using one of the transfer modes defined in the Blitter interface.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.FloatBlitter
Copies the float image in 'ip' to (x,y) using the specified mode.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.FloatProcessor
Copies the image contained in 'ip' to (xloc, yloc) using one of the transfer modes defined in the Blitter interface.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ImageProcessor
Copies the image contained in 'ip' to (xloc, yloc) using one of the transfer modes defined in the Blitter interface.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ShortBlitter
Copies the 16-bit image in 'ip' to (x,y) using the specified mode.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ShortProcessor
Copies the image contained in 'ip' to (xloc, yloc) using one of the transfer modes defined in the Blitter interface.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.StackProcessor
 
copyBits(ImageStack, int, int, int) - Method in class ij.process.StackProcessor
 
copyInto(Object, Object) - Static method in class nom.tam.util.ArrayFuncs
Copy an array into an array of a different type.
copyScale(ImagePlus) - Method in class ij.ImagePlus
Copies the calibration of the specified image to this image.
copySelection() - Method in class ij.text.TextPanel
Copies the current selection to the system clipboard.
copyToClipboard() - Method in class ij.gui.HistogramWindow
 
copyToHeader(Header) - Method in class skyview.geometry.WCS
 
Corner - Class in skyview.geometry.imagefinder
This class finds the best images to be used for sampling using a recursive rectangle algorithm.
Corner() - Constructor for class skyview.geometry.imagefinder.Corner
 
cornerMatch(int[], boolean[], boolean[]) - Method in class skyview.geometry.imagefinder.Border
Check the corners of a rectangle.
cornersOnly - Variable in class skyview.geometry.imagefinder.Border
Do we want to only check on the corners of the rectangles and not the edges.
COS - Static variable in interface ij.macro.MacroConstants
 
count - Variable in class ij.gui.HistogramWindow
 
create(String, String) - Method in class ij.plugin.frame.Editor
 
createBlankImage(int, int) - Static method in class ij.gui.GUI
Creates a white AWT Image image of the specified size.
createByteImage(String, int, int, int, int) - Static method in class ij.gui.NewImage
 
createColorModel(FileInfo) - Method in class ij.io.FileOpener
Returns an IndexColorModel for the image specified by this FileInfo.
createEmptyStack() - Method in class ij.ImagePlus
Returns an empty image stack that has the same width, height and color table as this image.
createFitsFile() - Method in class skyview.executive.Imager
Create the FITS file
createFloatImage(String, int, int, int, int) - Static method in class ij.gui.NewImage
 
createGrayscaleColorModel(boolean) - Static method in class ij.LookUpTable
 
createImage(String, int, int, int, int, int) - Static method in class ij.gui.NewImage
 
createImage(String, String, int, int, int) - Static method in class ij.IJ
Creates a new imagePlus.
createImage() - Method in class ij.process.ByteProcessor
 
createImage() - Method in class ij.process.ColorProcessor
 
createImage() - Method in class ij.process.FloatProcessor
 
createImage() - Method in class ij.process.ImageProcessor
Returns a copy of this image is the form of an AWT Image.
createImage() - Method in class ij.process.ShortProcessor
Create an 8-bit AWT image by scaling pixels in the range min-max to 0-255.
createImagePlus() - Method in class ij.ImagePlus
Returns a new ImagePlus with this ImagePlus' attributes (e.g.
createInputStream(FileInfo) - Method in class ij.io.FileOpener
Returns an InputStream for the image described by this FileInfo.
createLut() - Method in class ij.ImagePlus
Creates a LookUpTable object corresponding to this image.
createLUT() - Method in class ij.plugin.filter.AVIWriter
 
createMacro(String, String) - Method in class ij.plugin.frame.Editor
 
createMacro(String) - Method in class ij.plugin.NewPlugin
 
createNewRoi(int, int) - Method in class ij.ImagePlus
Starts the process of creating a new selection, where sx and sy are the starting screen coordinates.
createPlugin(String, int, String) - Method in class ij.plugin.NewPlugin
 
createProcessor(int, int) - Method in class ij.process.ByteProcessor
Returns a new, blank ByteProcessor with the specified width and height.
createProcessor(int, int) - Method in class ij.process.ColorProcessor
Returns a new, blank ShortProcessor with the specified width and height.
createProcessor(int, int) - Method in class ij.process.FloatProcessor
Returns a new, blank FloatProcessor with the specified width and height.
createProcessor(int, int) - Method in class ij.process.ImageProcessor
Returns a new, blank processor with the specified width and height.
createProcessor(int, int) - Method in class ij.process.ShortProcessor
Returns a new, blank ShortProcessor with the specified width and height.
createRGBImage(String, int, int, int, int) - Static method in class ij.gui.NewImage
 
createShortImage(String, int, int, int, int) - Static method in class ij.gui.NewImage
Creates an unsigned short image.
createUnsignedShortImage(String, int, int, int, int) - Static method in class ij.gui.NewImage
Obsolete.
createWindow() - Method in class ij.gui.ProfilePlot
Displays this profile plot in a window.
criterion(double, int) - Method in class skyview.geometry.imagefinder.Border
 
criterion(double, int) - Method in class skyview.geometry.imagefinder.MaxExposure
The criterion for the best image
crop() - Method in class ij.process.ByteProcessor
 
crop() - Method in class ij.process.ColorProcessor
 
crop() - Method in class ij.process.FloatProcessor
 
crop() - Method in class ij.process.ImageProcessor
Creates a new processor containing an image that corresponds to the current ROI.
crop() - Method in class ij.process.ShortProcessor
 
CROSS - Static variable in class ij.gui.Plot
Display points using an cross-shaped mark.
CROSS - Static variable in class ij.gui.PlotWindow
Display points using an cross-shaped mark.
CROSSHAIR - Static variable in class ij.gui.Toolbar
 
crosshairCursor - Static variable in class ij.gui.ImageCanvas
 
CscProjecter - Class in skyview.geometry.projecter
 
CscProjecter() - Constructor for class skyview.geometry.projecter.CscProjecter
 
CscProjecter.CscDeprojecter - Class in skyview.geometry.projecter
 
CscProjecter.CscDeprojecter() - Constructor for class skyview.geometry.projecter.CscProjecter.CscDeprojecter
 
cTable - Variable in class ij.process.ImageProcessor
 
curl(Object, int[]) - Static method in class nom.tam.util.ArrayFuncs
Curl an input array up into a multi-dimensional array.
currentMemory() - Static method in class ij.IJ
Returns the amount of memory currently being used by ImageJ.
currentSize() - Method in class nom.tam.fits.Fits
Deprecated. See getNumberOfHDUs()
Cursor - Interface in nom.tam.util
This interface extends the Iterator interface to allow insertion of data and move to previous entries in a collection.
CurveFitter - Class in ij.measure
Curve fitting class based on the Simplex method described in the article "Fitting Curves to Data" in the May 1984 issue of Byte magazine, pages 340-362.
CurveFitter(double[], double[]) - Constructor for class ij.measure.CurveFitter
Construct a new CurveFitter.
CUSTOM - Static variable in class ij.io.Opener
 
cx - Variable in class ij.process.ImageProcessor
 
cy - Variable in class ij.process.ImageProcessor
 

D

d2s(double) - Static method in class ij.IJ
Converts a number to a formatted string using 2 digits to the right of the decimal point.
d2s(double, int) - Static method in class ij.IJ
Converts a number to a rounded formatted string.
D2S - Static variable in interface ij.macro.MacroConstants
 
darkBlue - Static variable in class ij.plugin.filter.Analyzer
 
Data - Class in nom.tam.fits
This class provides methods to access the data segment of an HDU.
Data() - Constructor for class nom.tam.fits.Data
 
data - Variable in class skyview.survey.Image
The data in the image.
DataIO - Interface in nom.tam.util
This interface combines the DataInput, DataOutput and RandomAccess interfaces to provide a reference type which can be used to build BufferedFile in a fashion that accommodates both the RandomAccessFile and ByteBuffers
dataSize - Variable in class nom.tam.fits.Data
The size of the data when last read
DataTable - Interface in nom.tam.util
This interface defines the properties that a generic table should have.
DATE_TIME - Static variable in class ij.io.TiffDecoder
 
dBin - Variable in class skyview.executive.Imager
The width of pixels in energy space
debug(boolean) - Method in class skyview.geometry.Converter
 
debugInfo - Variable in class ij.io.FileInfo
 
debugMode - Static variable in class ij.IJ
 
debugMode - Variable in class ij.io.TiffDecoder
 
decimal(double, int) - Method in class skyview.data.CoordinateFormatter
 
decimalPlaces - Variable in class ij.gui.HistogramWindow
 
decodeToken(int) - Method in class ij.macro.Program
 
decompress(InputStream) - Static method in class skyview.survey.HDecompressor
Hdecompress static method.
decompress() - Method in class skyview.survey.HDecompressor
Decompress the input stream.
Deedger - Class in skyview.geometry
Invoke the standard deedger.
Deedger() - Constructor for class skyview.geometry.Deedger
 
deepClone(Object) - Static method in class nom.tam.util.ArrayFuncs
Try to create a deep clone of an Array or a standard clone of a scalar.
DEFAULT_PORT - Static variable in class ij.ImageJ
Address of socket where Image accepts commands
DEFAULT_QUALITY - Static variable in class ij.plugin.JpegWriter
 
defaultCursor - Static variable in class ij.gui.ImageCanvas
 
defaultDirectory - Static variable in class ij.gui.HistogramWindow
 
defaultText - Variable in class ij.gui.GenericDialog
 
defaultValues - Variable in class ij.gui.GenericDialog
 
degreeSymbol - Static variable in class ij.IJ
 
deleteColumns(int, int) - Method in class nom.tam.fits.AsciiTable
Delete columns from the table.
deleteColumns(int, int) - Method in class nom.tam.fits.BinaryTable
Delete a set of columns.
deleteColumns(int, int) - Method in interface nom.tam.fits.TableData
 
deleteColumns(int, int) - Method in class nom.tam.util.ColumnTable
Delete a contiguous set of columns from the table.
deleteColumnsIndexOne(int, int) - Method in class nom.tam.fits.TableHDU
Delete a set of columns from a table.
deleteColumnsIndexOne(int, int, String[]) - Method in class nom.tam.fits.TableHDU
Delete a set of columns from a table.
deleteColumnsIndexZero(int, int) - Method in class nom.tam.fits.TableHDU
Delete a set of columns from a table.
deleteColumnsIndexZero(int, int, String[]) - Method in class nom.tam.fits.TableHDU
Delete a set of columns from a table.
deleteHDU(int) - Method in class nom.tam.fits.Fits
Delete an HDU from the HDU list.
deleteKey(String) - Method in class nom.tam.fits.Header
Delete the card associated with the given key.
deleteLastSlice() - Method in class ij.ImageStack
Deletes the last slice in the stack.
deleteRow(int) - Method in class ij.measure.ResultsTable
Deletes the specified row.
deleteRow(int) - Method in class nom.tam.util.ColumnTable
Delete a row from the table.
deleteRows(int, int) - Method in class nom.tam.fits.AsciiTable
Delete rows from a FITS table
deleteRows(int, int) - Method in class nom.tam.fits.BinaryTable
Delete rows from a table.
deleteRows(int, int) - Method in interface nom.tam.fits.TableData
 
deleteRows(int) - Method in class nom.tam.fits.TableHDU
Remove all rows from the table starting at some specific index from the table.
deleteRows(int, int) - Method in class nom.tam.fits.TableHDU
Remove a number of adjacent rows from the table.
deleteRows(int, int) - Method in class nom.tam.util.ColumnTable
Delete a contiguous set of rows from the table.
deleteSlice(int) - Method in class ij.ImageStack
Deletes the specified slice, were 1<=n<=nslices.
Deprojecter - Class in skyview.geometry
This class deprojects a point from a projection plane onto thecelestial sphere.
Deprojecter() - Constructor for class skyview.geometry.Deprojecter
 
DepthSampler - Class in skyview.geometry
This class handles sampling in the depth dimension
DepthSampler(double, double, int) - Constructor for class skyview.geometry.DepthSampler
Generate an output image with the appropriate pixelization
description - Variable in class ij.io.FileInfo
 
DESPECKLE - Static variable in class ij.plugin.filter.RankFilters
 
dFlavor - Variable in class ij.plugin.DragAndDrop
 
DIALOG - Static variable in interface ij.macro.MacroConstants
 
DICOM - Static variable in class ij.io.FileInfo
 
DICOM - Static variable in class ij.io.Opener
 
DICOM - Class in ij.plugin
This plugin decodes DICOM files.
DICOM() - Constructor for class ij.plugin.DICOM
 
DICOM_Sorter - Class in ij.plugin
 
DICOM_Sorter() - Constructor for class ij.plugin.DICOM_Sorter
 
DIFFERENCE - Static variable in interface ij.process.Blitter
dst=abs(dst-src)
digits - Variable in class ij.gui.HistogramWindow
 
dilate() - Method in class ij.process.ByteProcessor
 
dilate(int, int) - Method in class ij.process.ByteProcessor
 
dilate() - Method in class ij.process.ColorProcessor
 
dilate() - Method in class ij.process.FloatProcessor
Not implemented.
dilate() - Method in class ij.process.ImageProcessor
Dilates the image or ROI using a 3x3 minimum filter.
dilate() - Method in class ij.process.ShortProcessor
Not implemented.
DIR_IMAGE - Static variable in class ij.Prefs
 
directory - Variable in class ij.io.FileInfo
 
DirectoryChooser - Class in ij.io
This class displays a dialog box that allows the user can select a directory.
DirectoryChooser(String) - Constructor for class ij.io.DirectoryChooser
Display a dialog using the specified title.
disableDensityCalibration() - Method in class ij.measure.Calibration
 
disableRowLabels() - Method in class ij.measure.ResultsTable
Set the row label column to null.
display(String, String) - Method in class ij.plugin.frame.Editor
 
DISPLAY_SUMMARY - Static variable in class ij.plugin.filter.ParticleAnalyzer
Display a summary.
displayFHT - Static variable in class ij.plugin.FFT
 
displayRawPS - Static variable in class ij.plugin.FFT
 
displayResults() - Method in class ij.plugin.filter.Analyzer
Writes the last row in the results table to the ImageJ window.
displaySummary - Variable in class ij.plugin.filter.ParticleAnalyzer
 
Distorter - Class in skyview.geometry
This class defines a non-linear distortion in the image plane.
Distorter() - Constructor for class skyview.geometry.Distorter
 
Distribution - Class in ij.plugin
This plugin implements the Analyze/Distribution command.
Distribution() - Constructor for class ij.plugin.Distribution
 
DIV_BY_ZERO_VALUE - Static variable in class ij.Prefs
 
DIV_EQUAL - Static variable in interface ij.macro.MacroConstants
 
DIVIDE - Static variable in interface ij.process.Blitter
dst=dst/src
divide(FHT) - Method in class ij.process.FHT
Returns the image resulting from the point by point Hartley division of this image by the specified image.
divideByZeroValue - Static variable in class ij.process.FloatBlitter
 
dmode - Variable in class ij.process.ImageStatistics
 
DO - Static variable in interface ij.macro.MacroConstants
 
DO_COMMAND - Static variable in interface ij.macro.MacroConstants
 
DO_WAND - Static variable in interface ij.macro.MacroConstants
 
doCommand(String) - Static method in class ij.IJ
Starts executing a menu command in a separete thread and returns immediately.
doCurl(Object, Object, int[], int) - Static method in class nom.tam.util.ArrayFuncs
Do the curling of the 1-d to multi-d array.
DOES_16 - Static variable in interface ij.plugin.filter.PlugInFilter
Set this flag if the filter handles 16-bit images.
DOES_32 - Static variable in interface ij.plugin.filter.PlugInFilter
Set this flag if the filter handles float images.
DOES_8C - Static variable in interface ij.plugin.filter.PlugInFilter
Set this flag if the filter handles 8-bit indexed color images.
DOES_8G - Static variable in interface ij.plugin.filter.PlugInFilter
Set this flag if the filter handles 8-bit grayscale images.
DOES_ALL - Static variable in interface ij.plugin.filter.PlugInFilter
Set this flag if the filter handles all types of images.
DOES_RGB - Static variable in interface ij.plugin.filter.PlugInFilter
Set this flag if the filter handles RGB images.
DOES_STACKS - Static variable in interface ij.plugin.filter.PlugInFilter
Set this flag if the filter wants its run() method to be called for all the slices in a stack.
doFit(int) - Method in class ij.measure.CurveFitter
Perform curve fitting with the simplex method doFit(fitType) just does the fit doFit(fitType, true) pops up a dialog allowing control over simplex parameters alpha is reflection coefficient (-1) beta is contraction coefficient (0.5) gamma is expansion coefficient (2)
doFit(int, boolean) - Method in class ij.measure.CurveFitter
 
doFit(int) - Method in class ij.plugin.frame.Fitter
 
doFlatten(Object, Object, int) - Static method in class nom.tam.util.ArrayFuncs
This routine does the actually flattening of multi-dimensional arrays.
doForewardTransform(FHT, ImageProcessor) - Method in class ij.plugin.FFT
 
doMath(ImagePlus, ImagePlus) - Method in class ij.plugin.FFTMath
 
done - Variable in class ij.gui.StackWindow
 
DONE - Static variable in interface ij.plugin.filter.PlugInFilter
Set this flag if the filter does not want its run method called.
doOptions() - Method in class ij.plugin.filter.Profiler
 
doParse(SAXParser, DefaultHandler) - Method in class skyview.survey.XMLSurvey
Run a parser
doProjection() - Method in class ij.plugin.ZProjector
Performs actual projection using specified method.
doProjections(ImagePlus) - Method in class ij.plugin.filter.Projector
 
doRGBProjection() - Method in class ij.plugin.ZProjector
 
doRGBProjections(ImagePlus) - Method in class ij.plugin.filter.Projector
 
doShortcut(String) - Static method in class ij.plugin.MacroInstaller
 
DOT - Static variable in class ij.gui.Plot
Display points using a single pixel.
DOUBLE_CLICK_THRESHOLD - Static variable in class ij.gui.Toolbar
 
DOUBLE_INDEX - Static variable in interface nom.tam.util.PrimitiveInfo
 
doWand(int, int) - Static method in class ij.IJ
Equivalent to clicking on the current image at (x,y) with the wand tool.
DragAndDrop - Class in ij.plugin
This class opens images, roi's, luts and text files dragged and dropped on the ImageJ frame.
DragAndDrop() - Constructor for class ij.plugin.DragAndDrop
 
dragEnter(DropTargetDragEvent) - Method in class ij.plugin.DragAndDrop
 
dragExit(DropTargetEvent) - Method in class ij.plugin.DragAndDrop
 
dragOver(DropTargetDragEvent) - Method in class ij.plugin.DragAndDrop
 
draw(Graphics) - Method in class ij.gui.Line
Draws this line in the image.
draw(Graphics) - Method in class ij.gui.OvalRoi
 
draw() - Method in class ij.gui.Plot
Draws the plot specified in the constructor.
draw() - Method in class ij.gui.PlotWindow
Displays the plot.
draw(Graphics) - Method in class ij.gui.PointRoi
Draws the points on the image.
draw(Graphics) - Method in class ij.gui.PolygonRoi
 
draw(Graphics) - Method in class ij.gui.Roi
 
draw(Graphics) - Method in class ij.gui.ShapeRoi
Non-destructively draws the shape of this object on the associated ImagePlus.
draw(Graphics) - Method in class ij.gui.TextRoi
Draws the text on the screen, clipped to the ROI.
draw() - Method in class ij.ImagePlus
Draws the image.
draw(int, int, int, int) - Method in class ij.ImagePlus
Draws image and roi outline using a clip rect.
draw(ImageProcessor) - Method in class ij.plugin.filter.Filler
 
DRAW_LINE - Static variable in interface ij.macro.MacroConstants
 
DRAW_STRING - Static variable in interface ij.macro.MacroConstants
 
drawColorBar(Graphics, int, int, int, int) - Method in class ij.LookUpTable
 
drawColorBar(ImageProcessor, int, int) - Method in class ij.plugin.filter.CalibrationBar
 
drawColorBar(ImagePlus, int, int) - Method in class ij.plugin.filter.CalibrationBar
 
drawDot(int, int) - Method in class ij.process.ImageProcessor
Draws a dot using the current line width and fill/draw value.
drawDot2(int, int) - Method in class ij.process.ImageProcessor
Obsolete
drawEllipse(ImageProcessor) - Method in class ij.process.EllipseFitter
Draws the ellipse on the specified image.
drawEllipse(ImageProcessor) - Method in class ij.process.ImageStatistics
 
drawHistogram(ImageProcessor, boolean) - Method in class ij.gui.HistogramWindow
 
drawInfo(Graphics) - Method in class ij.gui.ImageWindow
 
drawingColor - Variable in class ij.process.ImageProcessor
 
drawLine(int, int, int, int) - Method in class ij.process.ImageProcessor
Draws a line from (x1,y1) to (x2,y2).
drawParticle(ImageProcessor, Roi, ImageStatistics, ImageProcessor) - Method in class ij.plugin.filter.ParticleAnalyzer
Draws a selected particle in a separate image.
drawPixel(int, int) - Method in class ij.process.ByteProcessor
Draws a pixel in the current foreground color.
drawPixel(int, int) - Method in class ij.process.ColorProcessor
Draws a pixel in the current foreground color.
drawPixel(int, int) - Method in class ij.process.FloatProcessor
Draws a pixel in the current foreground color.
drawPixel(int, int) - Method in class ij.process.ImageProcessor
Sets the pixel at (x,y) to the current fill/draw value.
drawPixel(int, int) - Method in class ij.process.ShortProcessor
Draws a pixel in the current foreground color.
drawPixels(ImageProcessor) - Method in class ij.gui.Line
 
drawPixels(ImageProcessor) - Method in class ij.gui.OvalRoi
Draws an outline of this OvalRoi on the image.
drawPixels(ImageProcessor) - Method in class ij.gui.PointRoi
 
drawPixels(ImageProcessor) - Method in class ij.gui.PolygonRoi
 
drawPixels() - Method in class ij.gui.Roi
 
drawPixels(ImageProcessor) - Method in class ij.gui.Roi
 
drawPixels(ImageProcessor) - Method in class ij.gui.ShapeRoi
Draws the shape of this object onto the associated ImagePlus.
drawPixels(ImageProcessor) - Method in class ij.gui.TextRoi
Renders the text on the image.
drawPlot(Plot) - Method in class ij.gui.PlotWindow
Draws a new plot in this window.
drawPolygon(Polygon) - Method in class ij.process.ImageProcessor
Draws a polygon.
drawRect(int, int, int, int) - Method in class ij.process.ImageProcessor
Draws a rectangle.
drawString(String) - Method in class ij.process.ImageProcessor
Draws a string at the current location using the current fill/draw value.
drawString(String, int, int) - Method in class ij.process.ImageProcessor
Draws a string at the specified location using the current fill/draw value.
drawUnscaledColorBar(ImageProcessor, int, int, int, int) - Method in class ij.LookUpTable
 
drizzArea - Variable in class skyview.geometry.sampler.ClipSampler
Drizzle Area
drizzOffset - Variable in class skyview.geometry.sampler.ClipSampler
Drizzle offset
drop(DropTargetDropEvent) - Method in class ij.plugin.DragAndDrop
 
dropActionChanged(DropTargetDragEvent) - Method in class ij.plugin.DragAndDrop
 
DROPPER - Static variable in class ij.gui.Toolbar
 
dsamp - Variable in class skyview.executive.Imager
The energy sampler object used when creaing the output image.
DSS2ImageGenerator - Class in skyview.survey
This class generates DSS2 image spells.
DSS2ImageGenerator() - Constructor for class skyview.survey.DSS2ImageGenerator
 
DSSDistorter - Class in skyview.geometry.distorter
The distortion object for a given DSS structure.
DSSDistorter(double, double, double, double, double, double[], double[], double[]) - Constructor for class skyview.geometry.distorter.DSSDistorter
 
DSSDistorter.DSSInvDistorter - Class in skyview.geometry.distorter
This inner class is the inverse of the DSS Distorter and corrects the distortion generated there.
DSSDistorter.DSSInvDistorter() - Constructor for class skyview.geometry.distorter.DSSDistorter.DSSInvDistorter
 
DSSImage - Class in skyview.survey
This class defines an image as the combination of a set of pixel values and a WCS describing the pixel coordinates.
DSSImage(String) - Constructor for class skyview.survey.DSSImage
Construct a WCS
DSSImageFactory - Class in skyview.survey
A little class that creates FITS images using a factory method.
DSSImageFactory() - Constructor for class skyview.survey.DSSImageFactory
 
DUMP - Static variable in interface ij.macro.MacroConstants
 
dumpHeader(PrintStream) - Method in class nom.tam.fits.Header
Print the header to a given stream.
dumpLines() - Method in class skyview.data.Gridder
Display the lines
dumpProgram() - Method in class ij.macro.Program
 
dumpSymbolTable() - Method in class ij.macro.Program
 
duplicate(ImagePlus) - Method in class ij.plugin.filter.Duplicater
 
duplicate() - Method in class ij.process.ByteProcessor
Returns a duplicate of this image.
duplicate() - Method in class ij.process.ColorProcessor
Returns a duplicate of this image.
duplicate() - Method in class ij.process.FloatProcessor
Returns a duplicate of this image.
duplicate() - Method in class ij.process.ImageProcessor
Returns a duplicate of this image.
duplicate() - Method in class ij.process.ShortProcessor
Returns a duplicate of this image.
Duplicater - Class in ij.plugin.filter
This plugin implements ImageJ's Image/Duplicate command.
Duplicater() - Constructor for class ij.plugin.filter.Duplicater
 
duplicateStack(ImagePlus, String) - Method in class ij.plugin.filter.Duplicater
 

E

east(ImageProcessor) - Method in class ij.plugin.filter.Shadows
 
EclipticCoordinateSystem - Class in skyview.geometry.csys
An ecliptic coordinate system in a Julian frame.
EclipticCoordinateSystem(double) - Constructor for class skyview.geometry.csys.EclipticCoordinateSystem
Get an Ecliptic Coordinate system at a given epoch.
EclipticCoordinateSystem(double, double) - Constructor for class skyview.geometry.csys.EclipticCoordinateSystem
Get an Ecliptic coordinate system where the 0 of longitude can be reset.
edgeOff(int, int, int, int, boolean[]) - Method in class skyview.geometry.imagefinder.Border
Check whether all pixels on an edge of a rectangle all have the same best fit image.
Editor - Class in ij.plugin.frame
This is a simple TextArea based editor for editing and compiling plugins.
Editor() - Constructor for class ij.plugin.frame.Editor
 
EDM - Class in ij.plugin.filter
This plugin implements the Euclidean Distance Map (EDM), Ultimate Eroded Points and Watershed commands in the Process/Binary submenu.
EDM() - Constructor for class ij.plugin.filter.EDM
 
ELLIPSE - Static variable in interface ij.measure.Measurements
 
EllipseFitter - Class in ij.process
This class fits an ellipse to an ROI.
EllipseFitter() - Constructor for class ij.process.EllipseFitter
 
ELLIPSES - Static variable in class ij.plugin.filter.ParticleAnalyzer
 
ELSE - Static variable in interface ij.macro.MacroConstants
 
enableDebugging() - Method in class ij.io.TiffDecoder
 
encapsulate(Object) - Static method in class nom.tam.fits.AsciiTableHDU
Create a ASCII table data structure from an array of objects representing the columns.
encapsulate(Object) - Static method in class nom.tam.fits.BinaryTableHDU
Encapsulate data in a BinaryTable data type
encapsulate(Object) - Static method in class nom.tam.fits.ImageHDU
Encapsulate an object as an ImageHDU.
encapsulate(Object) - Static method in class nom.tam.fits.RandomGroupsHDU
 
encapsulate(Object) - Static method in class nom.tam.fits.UndefinedHDU
Encapsulate an object as an ImageHDU.
endPaste() - Method in class ij.gui.Roi
 
ENDS_WITH - Static variable in interface ij.macro.MacroConstants
 
EOF - Static variable in interface ij.macro.MacroConstants
 
EOL - Static variable in interface ij.macro.MacroConstants
 
EQ - Static variable in interface ij.macro.MacroConstants
 
equalize(ImagePlus) - Method in class ij.plugin.ContrastEnhancer
 
equalize(ImageProcessor) - Method in class ij.plugin.ContrastEnhancer
Changes the tone curves of images.
equals(Calibration) - Method in class ij.measure.Calibration
Compares two Calibration objects for equality.
equals(Object, Object) - Method in class nom.tam.fits.HeaderOrder
Can two cards be exchanged when being written out?
equals(Object) - Method in class skyview.request.SourceCoordinates
Determines is this object is equal to another object.
erode() - Method in class ij.process.ByteProcessor
 
erode(int, int) - Method in class ij.process.ByteProcessor
 
erode() - Method in class ij.process.ColorProcessor
 
erode() - Method in class ij.process.FloatProcessor
Not implemented.
erode() - Method in class ij.process.ImageProcessor
Erodes the image or ROI using a 3x3 maximum filter.
erode() - Method in class ij.process.ShortProcessor
Not implemented.
error(String) - Static method in class ij.IJ
Displays a message in a dialog box titled "ImageJ".
error(String, String) - Static method in class ij.IJ
Displays a message in a dialog box with the specified title.
escapePressed() - Static method in class ij.IJ
Returns true if the Esc key was pressed since the last ImageJ command started to execute or since resetEscape() was called.
EVAL - Static variable in interface ij.macro.MacroConstants
 
evalSpline(int[], int[], int, double) - Method in class ij.measure.SplineFitter
Evalutes spline function at given point
examinePrimitiveArray(Object) - Static method in class nom.tam.util.ArrayFuncs
Examine the structure of an array in detail.
EXCLUDE_EDGE_PARTICLES - Static variable in class ij.plugin.filter.ParticleAnalyzer
Do not measure particles touching edge of image.
excludeEdgeParticles - Variable in class ij.plugin.filter.ParticleAnalyzer
 
Executer - Class in ij
Runs menu commands in a separate thread.
Executer(String) - Constructor for class ij.Executer
Create an Executer to run the specified menu command in this thread using the active image.
Executer(String, ImagePlus) - Constructor for class ij.Executer
Create an Executer that runs the specified menu command in a separate thread using the specified image.
EXIT - Static variable in interface ij.macro.MacroConstants
 
EXP - Static variable in interface ij.macro.MacroConstants
 
exp() - Method in class ij.process.FloatProcessor
 
exp() - Method in class ij.process.ImageProcessor
Performs a exponential transform on the image or ROI.
exp() - Method in class ij.process.ShortProcessor
 
expandImage(ImageProcessor, int, int, int, int) - Method in class ij.plugin.CanvasResizer
 
expandStack(ImageStack, int, int, int, int) - Method in class ij.plugin.CanvasResizer
 
EXPONENTIAL - Static variable in class ij.measure.Calibration
 
EXPONENTIAL - Static variable in class ij.measure.CurveFitter
 

F

f(int, double[], double) - Static method in class ij.measure.CurveFitter
Returns "fit" function value for parametres "p" at "x"
f2hex(float) - Static method in class ij.util.Tools
Converts a float to an 9 byte hex string starting with '#'.
factory(String) - Static method in class skyview.geometry.CoordinateSystem
Get a coordinate system by name.
factory(String) - Static method in class skyview.geometry.ImageFinder
Create an ImageFinder given a class name or return an instance of the default class if no name is given.
factory(String) - Static method in class skyview.geometry.Sampler
Factory for creating samplers
factory(String) - Method in class skyview.survey.CachingImageFactory
 
factory(String) - Method in class skyview.survey.DSSImageFactory
 
factory(String) - Method in class skyview.survey.FitsImageFactory
 
factory(String) - Method in interface skyview.survey.ImageFactory
Create an image given the appropriate spell
factory(String, double, double, double) - Static method in class skyview.vo.ConeQuerier
Create a ConeQuerier Object.
FALSE - Static variable in interface ij.macro.MacroConstants
 
FCOLOR - Static variable in class ij.Prefs
 
FERET - Static variable in interface ij.measure.Measurements
 
FERET - Static variable in class ij.measure.ResultsTable
 
FFT - Class in ij.plugin
This class implements the FFT, Inverse FFT and Redisplay Power Spectrum commands in the Process/FFT submenu.
FFT() - Constructor for class ij.plugin.FFT
 
FFTCustomFilter - Class in ij.plugin.filter
This class implements the Process/FFT/Custom Filter command.
FFTCustomFilter() - Constructor for class ij.plugin.filter.FFTCustomFilter
 
FFTFilter - Class in ij.plugin.filter
This class implements the Process/FFT/bandpass Filter command.
FFTFilter() - Constructor for class ij.plugin.filter.FFTFilter
 
FFTMath - Class in ij.plugin
The class implements the Process/FFT/Math command.
FFTMath() - Constructor for class ij.plugin.FFTMath
 
FHT - Class in ij.process
This class contains a Java implementation of the Fast Hartley Transform.
FHT(ImageProcessor) - Constructor for class ij.process.FHT
Constructs a FHT object from an ImageProcessor.
FILE - Static variable in interface ij.macro.MacroConstants
 
fileFormat - Variable in class ij.io.FileInfo
 
FileInfo - Class in ij.io
This class consists of public fields that describe an image file.
FileInfo() - Constructor for class ij.io.FileInfo
Creates a FileInfo object with all of its fields set to their default value.
fileInit(File, boolean) - Method in class nom.tam.fits.Fits
Get a stream from the file and then use the stream initialization.
fileName - Variable in class ij.io.FileInfo
 
fileName - Static variable in class ij.plugin.FFT
 
fileOffset - Variable in class nom.tam.fits.Data
The starting location of the data when last read
FileOpener - Class in ij.io
Opens or reverts an image specified by a FileInfo object.
FileOpener(FileInfo) - Constructor for class ij.io.FileOpener
 
FileSaver - Class in ij.io
Saves images in tiff, gif, jpeg, raw, zip and text format.
FileSaver(ImagePlus) - Constructor for class ij.io.FileSaver
Constructs a FileSaver from an ImagePlus.
fileType - Variable in class ij.io.FileInfo
 
FILL - Static variable in interface ij.macro.MacroConstants
 
fill(ImageProcessor) - Method in class ij.plugin.filter.Filler
 
fill(ImageProcessor) - Method in class ij.process.ByteProcessor
Fills pixels that are within roi and part of the mask.
fill(ImageProcessor) - Method in class ij.process.ColorProcessor
Fills pixels that are within roi and part of the mask.
fill() - Method in class ij.process.ColorProcessor
Fills the current rectangular ROI.
fill() - Method in class ij.process.FloatProcessor
Fills the current rectangular ROI.
fill(ImageProcessor) - Method in class ij.process.FloatProcessor
Fills pixels that are within roi and part of the mask.
fill(int, int) - Method in class ij.process.FloodFiller
 
fill() - Method in class ij.process.ImageProcessor
Fills the image or ROI with the current fill/draw value.
fill(ImageProcessor) - Method in class ij.process.ImageProcessor
Fills pixels that are within the ROI and part of the mask (i.e.
fill(ImageProcessor, Rectangle) - Method in class ij.process.PolygonFiller
Fills the polygon using the ImageProcessor's current drawing color.
fill() - Method in class ij.process.ShortProcessor
Fills the current rectangular ROI.
fill(ImageProcessor) - Method in class ij.process.ShortProcessor
Fills pixels that are within roi and part of the mask.
FILL_BLACK - Static variable in class ij.gui.NewImage
 
FILL_RAMP - Static variable in class ij.gui.NewImage
 
FILL_RECT - Static variable in interface ij.macro.MacroConstants
 
FILL_WHITE - Static variable in class ij.gui.NewImage
 
Filler - Class in ij.plugin.filter
This plugin implements ImageJ's Fill, Clear, Clear Outside and Draw commands.
Filler() - Constructor for class ij.plugin.filter.Filler
 
fillFileData(Object, int, int, int) - Method in class nom.tam.image.ImageTiler
File a tile segment from a file.
fillHeader(Header) - Method in class nom.tam.fits.AsciiTable
Fill in a header with information that points to this data.
fillHeader(Header) - Method in class nom.tam.fits.BinaryTable
Update a FITS header to reflect the current state of the data.
fillHeader(Header) - Method in class nom.tam.fits.ImageData
Fill header with keywords that describe image data.
fillHeader(Header) - Method in class nom.tam.fits.RandomGroupsData
 
fillHeader(Header) - Method in class nom.tam.fits.UndefinedData
Fill header with keywords that describe data.
fillMemData(Object, int[], int, Object, int, int) - Method in class nom.tam.image.ImageTiler
Fill a single segment from memory.
fillPolygon(Polygon) - Method in class ij.process.ImageProcessor
Fills a polygon.
fillTile(Object, Object, int[], int[], int[]) - Method in class nom.tam.image.ImageTiler
Fill the subset.
filter(int) - Method in class ij.process.ByteProcessor
Filters using a 3x3 neighborhood.
filter(int) - Method in class ij.process.ColorProcessor
3x3 unweighted smoothing.
filter(int) - Method in class ij.process.FloatProcessor
Filters using a 3x3 neighborhood.
filter(int) - Method in class ij.process.ImageProcessor
A 3x3 filter operation, where the argument (BLUR_MORE, FIND_EDGES, etc.) determines the filter type.
filter(int) - Method in class ij.process.ShortProcessor
Filters using a 3x3 neighborhood.
FILTER - Static variable in class ij.Undo
 
filterRGB(int, double) - Method in class ij.process.ColorProcessor
Performs the specified 3x3 filter on the reg, green and blue planes.
Filters - Class in ij.plugin.filter
This plugin implements the Invert, Smooth, Sharpen, Find Edges, and Add Noise commands.
Filters() - Constructor for class ij.plugin.filter.Filters
 
FILTERS_MENU - Static variable in class ij.Menus
 
finalize() - Method in class nom.tam.util.BufferedFile
Clear up any pending output at cleanup.
find(String) - Method in interface skyview.survey.SurveyFinder
Do we have this survey?
find(String) - Method in class skyview.survey.XMLSurveyFinder
Do we have this survey?
findCard(String) - Method in class nom.tam.fits.Header
Find the card associated with a given key.
findColumn(String) - Method in class nom.tam.fits.TableHDU
 
findEdges() - Method in class ij.process.ColorProcessor
 
findEdges() - Method in class ij.process.ImageProcessor
Finds edges in the image or ROI using a Sobel operator.
findImages(Image[], Image) - Method in class skyview.geometry.imagefinder.Border
Find the best image for each output pixel.
findImages(Image[], Image) - Method in class skyview.geometry.imagefinder.Corner
Find the best image for each output pixel.
findImages(Image[], Image) - Method in class skyview.geometry.ImageFinder
This is the basic method in the image finder.
findImages(Image[], Image) - Method in class skyview.geometry.imagefinder.MaxExposure
Find the appropriate images.
findImages(Image[], Image) - Method in class skyview.geometry.imagefinder.RecursiveImageFinder
Find the best image for each output pixel.
findKey(String) - Method in class nom.tam.fits.Header
Find the card associated with a given key.
findMinAndMax() - Method in class ij.process.FloatProcessor
Calculates the minimum and maximum pixel value for the entire image.
findMinAndMax() - Method in class ij.process.ShortProcessor
 
findOffset(Object) - Static method in class nom.tam.fits.FitsUtil
Find out where we are in a random access file
findUltimatePoints(ImageProcessor) - Method in class ij.plugin.filter.EDM
Finds peaks in the EDM that contain pixels equal to or greater than all of their neighbors.
FIRST_NUMERIC - Static variable in interface nom.tam.util.PrimitiveInfo
Index of first element of above arrays referring to a numeric type
fit(ImageProcessor, ImageStatistics) - Method in class ij.process.EllipseFitter
Fits an ellipse to the current ROI.
fitList - Static variable in class ij.measure.CurveFitter
 
FITS - Static variable in class ij.io.FileInfo
 
FITS - Static variable in class ij.io.Opener
 
FITS - Class in ij.plugin
Opens and displays FITS images.
FITS() - Constructor for class ij.plugin.FITS
 
Fits - Class in nom.tam.fits
This class provides access to routines to allow users to read and write FITS files.
Fits() - Constructor for class nom.tam.fits.Fits
Create an empty Fits object which is not associated with an input stream.
Fits(InputStream) - Constructor for class nom.tam.fits.Fits
Create a Fits object associated with the given uncompressed data stream.
Fits(InputStream, boolean) - Constructor for class nom.tam.fits.Fits
Create a Fits object associated with a possibly compressed data stream.
Fits(File) - Constructor for class nom.tam.fits.Fits
Associate FITS object with an uncompressed File
Fits(File, boolean) - Constructor for class nom.tam.fits.Fits
Associate the Fits object with a File
Fits(String) - Constructor for class nom.tam.fits.Fits
Associate the FITS object with a file or URL.
Fits(URL) - Constructor for class nom.tam.fits.Fits
Associate the FITS object with a given uncompressed URL
Fits(URL, boolean) - Constructor for class nom.tam.fits.Fits
Associate the FITS object with a given URL
FitsDate - Class in nom.tam.fits
 
FitsDate(String) - Constructor for class nom.tam.fits.FitsDate
Convert a FITS date string to a Java Date object.
FitsElement - Interface in nom.tam.fits
 
FitsException - Exception in nom.tam.fits
 
FitsException() - Constructor for exception nom.tam.fits.FitsException
 
FitsException(String) - Constructor for exception nom.tam.fits.FitsException
 
FitsFactory - Class in nom.tam.fits
This class contains the code which associates particular FITS types with header and data configurations.
FitsFactory() - Constructor for class nom.tam.fits.FitsFactory
 
FitsHeap - Class in nom.tam.fits
This class supports the FITS heap.
FitsImage - Class in skyview.survey
This class defines an image gotten by reading a file
FitsImage(String) - Constructor for class skyview.survey.FitsImage
 
FitsImageFactory - Class in skyview.survey
A little class that creates FITS images using a factory method.
FitsImageFactory() - Constructor for class skyview.survey.FitsImageFactory
 
fitSpline(int) - Method in class ij.gui.PolygonRoi
 
FitsUtil - Class in nom.tam.fits
This class comprises static utility functions used throughout the FITS classes.
FitsUtil() - Constructor for class nom.tam.fits.FitsUtil
 
Fitter - Class in ij.plugin.frame
ImageJ plugin that does curve fitting using the modified CurveFitter class.
Fitter() - Constructor for class ij.plugin.frame.Fitter
 
fixNewLines(String) - Static method in class ij.util.Tools
Converts carriage returns to line feeds.
flatten(Object) - Static method in class nom.tam.util.ArrayFuncs
Given an array of arbitrary dimensionality return the array flattened into a single dimension.
flipHorizontal() - Method in class ij.process.ImageProcessor
Flips the image or ROI horizontally.
flipHorizontal() - Method in class ij.process.StackProcessor
 
flipVertical() - Method in class ij.process.ByteProcessor
 
flipVertical() - Method in class ij.process.ColorProcessor
 
flipVertical() - Method in class ij.process.FloatProcessor
 
flipVertical() - Method in class ij.process.ImageProcessor
Flips the image or ROI vertically.
flipVertical() - Method in class ij.process.ShortProcessor
 
flipVertical() - Method in class ij.process.StackProcessor
 
fList - Static variable in class ij.measure.CurveFitter
 
FLOAT_INDEX - Static variable in interface nom.tam.util.PrimitiveInfo
 
FloatBlitter - Class in ij.process
This class does bit blitting of 32-bit floating-point images.
FloatBlitter(FloatProcessor) - Constructor for class ij.process.FloatBlitter
Constructs a FloatBlitter from a FloatProcessor.
FloatProcessor - Class in ij.process
This is an 32-bit floating-point image and methods that operate on that image.
FloatProcessor(int, int, float[], ColorModel) - Constructor for class ij.process.FloatProcessor
Creates a new FloatProcessor using the specified pixel array and ColorModel.
FloatProcessor(int, int) - Constructor for class ij.process.FloatProcessor
Creates a blank FloatProcessor using the default grayscale LUT that displays zero as black.
FloatProcessor(int, int, int[]) - Constructor for class ij.process.FloatProcessor
Creates a FloatProcessor from an int array using the default grayscale LUT.
FloatProcessor(int, int, double[]) - Constructor for class ij.process.FloatProcessor
Creates a FloatProcessor from a double array using the default grayscale LUT.
FloatProcessor(float[][]) - Constructor for class ij.process.FloatProcessor
Creates a FloatProcessor from a float[][] array using the default LUT
FloatStatistics - Class in ij.process
32-bit (float) image statistics, including histogram.
FloatStatistics(ImageProcessor) - Constructor for class ij.process.FloatStatistics
Constructs an ImageStatistics object from a FloatProcessor using the standard measurement options (area, mean, mode, min and max).
FloatStatistics(ImageProcessor, int, Calibration) - Constructor for class ij.process.FloatStatistics
Constructs a FloatStatistics object from a FloatProcessor using the specified measurement options.
FLOOD_FILL - Static variable in interface ij.macro.MacroConstants
 
floodFill - Variable in class ij.plugin.filter.ParticleAnalyzer
 
FloodFiller - Class in ij.process
This class, which does flood filling, is used by the floodFill() macro function and by the particle analyzer The Wikipedia at "http://en.wikipedia.org/wiki/Flood_fill" has a good description of the algorithm used here as well as examples in C and Java.
FloodFiller(ImageProcessor) - Constructor for class ij.process.FloodFiller
 
FLOOR - Static variable in interface ij.macro.MacroConstants
 
flush() - Method in class ij.ImagePlus
Sets the image arrays to null to help the garbage collector do its job.
flush() - Method in interface nom.tam.util.ArrayDataOutput
 
flush() - Method in class nom.tam.util.BufferedFile
Flush output buffer if necessary.
focusGained(FocusEvent) - Method in class ij.gui.GenericDialog
 
focusGained(FocusEvent) - Method in class ij.gui.ImageWindow
 
focusGained(FocusEvent) - Method in class ij.plugin.frame.PlugInFrame
 
focusGained(FocusEvent) - Method in class ij.text.TextWindow
 
focusLost(FocusEvent) - Method in class ij.gui.GenericDialog
 
focusLost(FocusEvent) - Method in class ij.gui.ImageWindow
 
focusLost(FocusEvent) - Method in class ij.plugin.frame.PlugInFrame
 
focusLost(FocusEvent) - Method in class ij.text.TextWindow
 
FolderOpener - Class in ij.plugin
Implements the File/Import/Image Sequence command, which opens a folder of images as a stack.
FolderOpener() - Constructor for class ij.plugin.FolderOpener
 
font - Variable in class ij.process.ImageProcessor
 
fontMetrics - Variable in class ij.process.ImageProcessor
 
Fonts - Class in ij.plugin.frame
Displays a window that allows the user to set the font, size and style.
Fonts() - Constructor for class ij.plugin.frame.Fonts
 
FOR - Static variable in interface ij.macro.MacroConstants
 
format(int, byte[]) - Method in class nom.tam.util.ByteFormatter
Format an int into an array.
format(int, byte[], int, int) - Method in class nom.tam.util.ByteFormatter
Format an int into an existing array.
format(long, byte[]) - Method in class nom.tam.util.ByteFormatter
Format a long into an array.
format(long, byte[], int, int) - Method in class nom.tam.util.ByteFormatter
Format a long into an existing array.
format(boolean, byte[]) - Method in class nom.tam.util.ByteFormatter
Format a boolean into an existing array.
format(boolean, byte[], int, int) - Method in class nom.tam.util.ByteFormatter
Format a boolean into an existing array
format(String, byte[]) - Method in class nom.tam.util.ByteFormatter
Insert a string at the beginning of an array
format(String, byte[], int, int) - Method in class nom.tam.util.ByteFormatter
Insert a String into an existing character array.
format(float, byte[]) - Method in class nom.tam.util.ByteFormatter
Format a float into an array.
format(float, byte[], int, int) - Method in class nom.tam.util.ByteFormatter
Format a float into an existing byteacter array.
format(double, byte[]) - Method in class nom.tam.util.ByteFormatter
Format a double into an array.
format(double, byte[], int, int) - Method in class nom.tam.util.ByteFormatter
Format a double into an existing character array.
format(double, int) - Method in class skyview.data.CoordinateFormatter
 
FormatException - Exception in nom.tam.util
 
FPS - Static variable in class ij.Prefs
 
FractalBoxCounter - Class in ij.plugin.filter
Calculate the so-called "capacity" fractal dimension.
FractalBoxCounter() - Constructor for class ij.plugin.filter.FractalBoxCounter
 
frame - Variable in class ij.gui.HistogramWindow
 
frameInterval - Variable in class ij.io.FileInfo
 
frameInterval - Variable in class ij.measure.Calibration
Frame interval in seconds
FreehandRoi - Class in ij.gui
Freehand region of interest or freehand line of interest
FreehandRoi(int, int, ImagePlus) - Constructor for class ij.gui.FreehandRoi
 
FREELINE - Static variable in class ij.gui.Roi
 
FREELINE - Static variable in class ij.gui.Toolbar
 
freeMemory() - Static method in class ij.IJ
Runs the garbage collector and returns a string something like "64K of 256MB (25%)" that shows how much of the available memory is in use.
FREEROI - Static variable in class ij.gui.Roi
 
FREEROI - Static variable in class ij.gui.Toolbar
 
FROM_CHAR_CODE - Static variable in interface ij.macro.MacroConstants
 
fromOut - Variable in class skyview.geometry.imagefinder.Border
The transformation from the output pixels to the celestial sphere
FUNCTION - Static variable in interface ij.macro.MacroConstants
 
functionIDs - Static variable in interface ij.macro.MacroConstants
 
Functions - Class in ij.macro
This class implements the built-in macro functions.
functions - Static variable in interface ij.macro.MacroConstants
 

G

Galactic - Static variable in class skyview.geometry.CoordinateSystem
Standard Galactic coordinates
GalacticCoordinateSystem - Class in skyview.geometry.csys
The class defining Galactic coordinate system.
GalacticCoordinateSystem() - Constructor for class skyview.geometry.csys.GalacticCoordinateSystem
 
gamma(double) - Method in class ij.process.FloatProcessor
 
gamma(double) - Method in class ij.process.ImageProcessor
Performs gamma correction of the image or ROI.
gamma(double) - Method in class ij.process.ShortProcessor
 
GAMMA_VARIATE - Static variable in class ij.measure.Calibration
 
GAMMA_VARIATE - Static variable in class ij.measure.CurveFitter
 
gapBetweenImages - Variable in class ij.io.FileInfo
 
GaussianBlur - Class in ij.plugin.filter
This plugin implements ImageJ's Gaussian Blur command.
GaussianBlur() - Constructor for class ij.plugin.filter.GaussianBlur
 
GelAnalyzer - Class in ij.plugin
This plugin generates gel profile plots that can be analyzed using the wand tool.
GelAnalyzer() - Constructor for class ij.plugin.GelAnalyzer
 
generateArray(Class, int[]) - Static method in class nom.tam.util.ArrayFuncs
Create an array and populate it with a test pattern.
genericClone(Object) - Static method in class nom.tam.util.ArrayFuncs
Clone an Object if possible.
GenericDialog - Class in ij.gui
This class is a customizable modal dialog box.
GenericDialog(String) - Constructor for class ij.gui.GenericDialog
Creates a new GenericDialog with the specified title.
GenericDialog(String, Frame) - Constructor for class ij.gui.GenericDialog
Creates a new GenericDialog using the specified title and parent frame.
get(String, String) - Static method in class ij.Prefs
Uses the keyword key to retrieve a string from the preferences file.
get(String, double) - Static method in class ij.Prefs
Uses the keyword key to retrieve a number from the preferences file.
get(String, boolean) - Static method in class ij.Prefs
Uses the keyword key to retrieve a boolean from the preferences file.
get(int, int) - Method in class ij.process.ByteProcessor
 
get(Object) - Method in class nom.tam.util.HashedList
Return the value of a keyed entry.
get(int) - Method in class nom.tam.util.HashedList
Return the n'th entry from the beginning.
get(String) - Static method in class skyview.executive.Settings
Get a value corresponding to the key
get(String, String) - Static method in class skyview.executive.Settings
Get a values corresponding to a key or the default
GET_ARGUMENT - Static variable in interface ij.macro.MacroConstants
 
GET_BOOLEAN - Static variable in interface ij.macro.MacroConstants
 
GET_BOUNDING_RECT - Static variable in interface ij.macro.MacroConstants
 
GET_BOUNDS - Static variable in interface ij.macro.MacroConstants
 
GET_COORDINATES - Static variable in interface ij.macro.MacroConstants
 
GET_COUNT - Static variable in interface ij.macro.MacroConstants
 
GET_CURSOR_LOC - Static variable in interface ij.macro.MacroConstants
 
GET_DATE_AND_TIME - Static variable in interface ij.macro.MacroConstants
 
GET_DIRECTORY - Static variable in interface ij.macro.MacroConstants
 
GET_FILE_LIST - Static variable in interface ij.macro.MacroConstants
 
GET_HEIGHT - Static variable in interface ij.macro.MacroConstants
 
GET_HISTOGRAM - Static variable in interface ij.macro.MacroConstants
 
GET_ID - Static variable in interface ij.macro.MacroConstants
 
GET_IMAGE_INFO - Static variable in interface ij.macro.MacroConstants
 
GET_INFO - Static variable in interface ij.macro.MacroConstants
 
GET_LINE - Static variable in interface ij.macro.MacroConstants
 
GET_LOCATION_AND_SIZE - Static variable in interface ij.macro.MacroConstants
 
GET_LUT - Static variable in interface ij.macro.MacroConstants
 
GET_METADATA - Static variable in interface ij.macro.MacroConstants
 
GET_MIN_AND_MAX - Static variable in interface ij.macro.MacroConstants
 
GET_NUMBER - Static variable in interface ij.macro.MacroConstants
 
GET_PIXEL - Static variable in interface ij.macro.MacroConstants
 
GET_PIXEL_SIZE - Static variable in interface ij.macro.MacroConstants
 
GET_PROFILE - Static variable in interface ij.macro.MacroConstants
 
GET_RAW_STATISTICS - Static variable in interface ij.macro.MacroConstants
 
GET_RESULT - Static variable in interface ij.macro.MacroConstants
 
GET_RESULT_LABEL - Static variable in interface ij.macro.MacroConstants
 
GET_SLICE_NUMBER - Static variable in interface ij.macro.MacroConstants
 
GET_STATISTICS - Static variable in interface ij.macro.MacroConstants
 
GET_STRING - Static variable in interface ij.macro.MacroConstants
 
GET_THRESHOLD - Static variable in interface ij.macro.MacroConstants
 
GET_TIME - Static variable in interface ij.macro.MacroConstants
 
GET_TITLE - Static variable in interface ij.macro.MacroConstants
 
GET_VERSION - Static variable in interface ij.macro.MacroConstants
 
GET_VOXEL_SIZE - Static variable in interface ij.macro.MacroConstants
 
GET_WIDTH - Static variable in interface ij.macro.MacroConstants
 
GET_ZOOM - Static variable in interface ij.macro.MacroConstants
 
getAngle() - Method in class ij.gui.PolygonRoi
Returns the angle in degrees between the first two segments of this polyline.
getAngle(int, int, int, int) - Method in class ij.gui.Roi
Returns the angle in degrees between the specified line and a horizontal line.
getApplet() - Static method in class ij.IJ
Returns the Applet that created this ImageJ or null if running as an application.
getArray(String) - Static method in class skyview.executive.Settings
Get the values corresponding to a key as an array of strings.
getAuthor() - Method in class nom.tam.fits.BasicHDU
Return the name of the person who compiled the information in the data associated with this header.
getAutoThreshold() - Method in class ij.process.ImageProcessor
Returns a pixel value (threshold) that can be used to divide the image into objects and background.
getAutoThreshold(int[]) - Method in class ij.process.ImageProcessor
This is a version of getAutoThreshold() that uses a histogram passed as an argument.
getAxes() - Method in class nom.tam.fits.BasicHDU
 
getBackgroundColor() - Static method in class ij.gui.Toolbar
 
getBaseArray(Object) - Static method in class nom.tam.util.ArrayFuncs
This routine returns the base array of a multi-dimensional array.
getBaseClass(Object) - Static method in class nom.tam.util.ArrayFuncs
This routine returns the base class of an object.
getBaseLength(Object) - Static method in class nom.tam.util.ArrayFuncs
This routine returns the size of the base element of an array.
getBases() - Method in class nom.tam.fits.BinaryTable
 
getBases() - Method in class nom.tam.util.ColumnTable
Get the base classes of the columns.
getBatchModeImage(int) - Static method in class ij.macro.Interpreter
 
getBatchModeImageCount() - Static method in class ij.macro.Interpreter
 
getBatchModeImageIDs() - Static method in class ij.macro.Interpreter
 
getBestIndex(Color) - Method in class ij.process.ColorProcessor
Always returns 0 since RGB images do not use LUTs.
getBestIndex(Color) - Method in class ij.process.ImageProcessor
Returns the LUT index that's the best match for this color.
getBitDepth() - Method in class ij.ImagePlus
Returns the bit depth, 8, 16, 24 (RGB) or 32.
getBitPix() - Method in class nom.tam.fits.BasicHDU
 
getBits(int) - Method in class ij.io.BitBuffer
 
getBlankValue() - Method in class nom.tam.fits.BasicHDU
 
getBlues() - Method in class ij.LookUpTable
 
getBoolean(String, boolean) - Static method in class ij.Prefs
Finds a boolean in IJ_Props or IJ_Prefs.txt.
getBoolean() - Method in class nom.tam.util.ByteParser
Get a boolean value from the beginning of the buffer
getBoolean(int) - Method in class nom.tam.util.ByteParser
Get a boolean value from a specified region of the buffer
getBooleanValue(String) - Method in class nom.tam.fits.Header
Get the boolean value associated with the given key.
getBooleanValue(String, boolean) - Method in class nom.tam.fits.Header
Get the boolean value associated with the given key.
getBoundingRect() - Method in class ij.gui.Roi
This obsolete method has been replaced by getBounds().
getBounds() - Method in class ij.gui.Roi
Return this selection's bounding rectangle.
getBrightness() - Method in class ij.process.ColorProcessor
Returns brightness as a FloatProcessor.
getBScale() - Method in class nom.tam.fits.BasicHDU
 
getBuffer() - Method in class nom.tam.util.ByteParser
Get the buffer being used by the parser
getBUnit() - Method in class nom.tam.fits.BasicHDU
 
getByteRow(ImageStack, int, int, int, int, int, int[]) - Method in class ij.plugin.filter.Projector
 
getBytesPerPixel() - Method in class ij.io.FileInfo
Returns the number of bytes used per pixel.
getBZero() - Method in class nom.tam.fits.BasicHDU
 
getCalibration() - Method in class ij.ImagePlus
Returns this image's calibration.
getCalibrationTable() - Method in class ij.process.ImageProcessor
Returns the calibration table or null.
getCandidates() - Method in class skyview.executive.Imager
Get the candidate images that may be used for resampling
getCanvas() - Method in class ij.gui.ImageWindow
 
getCard(int) - Method in class nom.tam.fits.Header
Deprecated. An iterator should be used for sequential access to the header.
getCatalogs() - Method in class skyview.vo.CatalogProcessor
 
getCelest(int) - Method in class skyview.geometry.imagefinder.Border
Get the celestial coordinates corresponding to a given pixel.
getCenter(int) - Method in class skyview.survey.Image
Get the center position of the given output pixel
getCenter(int) - Method in class skyview.survey.ProxyImage
Get the center position of the given output pixel
getChannel() - Method in class nom.tam.util.BufferedFile
Get the channel associated with this file.
getCheckboxes() - Method in class ij.gui.GenericDialog
Returns the Vector containing the Checkboxes.
getChoices() - Method in class ij.gui.GenericDialog
Returns the Vector containing the Choices.
getClipboard() - Static method in class ij.ImagePlus
Returns the internal clipboard or null if the internal clipboard is empty.
getCode() - Method in class ij.macro.Program
 
getCoefficients() - Method in class ij.measure.Calibration
Returns the calibration function coefficients.
getColor() - Method in class ij.gui.ColorChooser
Displays a color selection dialog and returns the color selected by the user.
getColor() - Static method in class ij.gui.Roi
Returns the color used for drawing ROI outlines.
getColor() - Method in class ij.gui.Toolbar
Obsolete.
getColor(String, Color) - Static method in class ij.Prefs
Finds a color in IJ_Props or IJ_Prefs.txt.
getColor(int, int) - Method in class ij.process.ColorProcessor
 
getColorModel() - Method in class ij.ImageStack
Returns this stack's color model.
getColorModel() - Method in class ij.LookUpTable
 
getColorModel() - Method in class ij.process.ImageProcessor
Returns this processor's color model.
getColumn(int) - Method in class ij.measure.ResultsTable
Returns a copy of the given column as a float array.
getColumn(int, int, int[], int) - Method in class ij.process.ImageProcessor
Returns the pixel values down the column starting at (x,y).
getColumn(int) - Method in class nom.tam.fits.AsciiTable
Get a column of data
getColumn(int) - Method in class nom.tam.fits.BinaryTable
Get a given column
getColumn(int) - Method in interface nom.tam.fits.TableData
 
getColumn(String) - Method in class nom.tam.fits.TableHDU
 
getColumn(int) - Method in class nom.tam.fits.TableHDU
 
getColumn(int) - Method in class nom.tam.util.ColumnTable
Get a particular column.
getColumn(int) - Method in interface nom.tam.util.DataTable
 
getColumnFormat(int) - Method in class nom.tam.fits.TableHDU
Get the FITS type of a column in the table.
getColumnHeading(int) - Method in class ij.measure.ResultsTable
Returns the heading of the specified column or null if the column is empty.
getColumnHeadings() - Method in class ij.measure.ResultsTable
Returns a tab-delimited string containing the column headings.
getColumnHeadings() - Method in class ij.text.TextPanel
Returns the column headings as a tab-delimited string.
getColumnIndex(String) - Method in class ij.measure.ResultsTable
Returns the index of the first column with the given heading.
getColumnName(int) - Method in class nom.tam.fits.TableHDU
Get the name of a column in the table.
getColumns() - Method in class nom.tam.util.ColumnTable
Get the actual data arrays
getCommand() - Static method in class ij.Executer
Returns the last command executed.
getCommandOptions() - Static method in class ij.plugin.frame.Recorder
Use by GenericDialog to determine if any options have been recorded.
getCommands() - Static method in class ij.Menus
Returns the hashtable that associates commands with plugins.
getComment() - Method in class nom.tam.fits.HeaderCard
Return the comment from this card
getCompleteImage() - Method in class nom.tam.image.ImageTiler
Read the entire image into a multidimensional array.
getCoordinateSystem() - Method in class skyview.geometry.WCS
Get the CoordinateSystem used in the WCS
getCopy() - Method in class ij.process.FHT
Returns a clone of this FHT.
getCorners(int) - Method in class skyview.survey.Image
Get the corners of the given output pixel
getCorners(int) - Method in class skyview.survey.ProxyImage
Get the corners of the given output pixel
getCount() - Method in class skyview.vo.ConeQuerier
Get the number of rows returned
getCounter() - Method in class ij.measure.ResultsTable
Returns the current value of the measurement counter.
getCounter() - Static method in class ij.plugin.filter.Analyzer
Returns the current measurement count.
getCreationDate() - Method in class nom.tam.fits.BasicHDU
Get the FITS file creation date as a Date object.
getCTable() - Method in class ij.measure.Calibration
Returns the calibration table.
getCtype() - Method in class skyview.request.SourceCoordinates
returns coordinate system of center coordinates
getCurrentColorModel() - Method in class ij.process.ImageProcessor
Returns the current color model, which may have been modified by setMinAndMax() or setThreshold().
getCurrentImage() - Static method in class ij.WindowManager
Returns the active ImagePlus.
getCurrentPasteMode() - Static method in class ij.gui.Roi
Returns the current paste transfer mode.
getCurrentSlice() - Method in class ij.ImagePlus
Returns the current stack slice number or 1 if this is a single image.
getCurrentWindow() - Static method in class ij.WindowManager
Returns the active ImageWindow.
getCursorLoc() - Method in class ij.gui.ImageCanvas
Returns the current cursor location.
getCValue(int) - Method in class ij.measure.Calibration
Converts a raw pixel value to a density calibrated value.
getCValue(double) - Method in class ij.measure.Calibration
Converts a raw pixel value to a density calibrated value.
getData() - Method in class nom.tam.fits.AsciiTable
Get the ASCII table information.
getData() - Method in class nom.tam.fits.AsciiTableHDU
Return the FITS data structure associated with this HDU.
getData() - Method in class nom.tam.fits.BasicHDU
Get the associated Data object
getData() - Method in class nom.tam.fits.BinaryTable
 
getData() - Method in class nom.tam.fits.Data
Return the data array object.
getData(int, Object) - Method in class nom.tam.fits.FitsHeap
Get data from the heap.
getData() - Method in class nom.tam.fits.ImageData
Return the actual data.
getData() - Method in class nom.tam.fits.RandomGroupsData
 
getData() - Method in class nom.tam.fits.UndefinedData
Return the actual data.
getData(int) - Method in class skyview.survey.DSSImage
Get a pixels data associated with the image.
getData(int) - Method in class skyview.survey.FitsImage
Defer reading the data until it is asked for.
getData(int) - Method in class skyview.survey.Image
Get a pixels data associated with the image.
getData(int) - Method in class skyview.survey.ProxyImage
Get a pixels data associated with the image.
getDataArray() - Method in class skyview.survey.DSSImage
Get the data as an array
getDataArray() - Method in class skyview.survey.Image
Get the data as an array
getDataArray() - Method in class skyview.survey.ProxyImage
Get the data as an array
getDataSize() - Method in class nom.tam.fits.Header
Return the size of the data including any needed padding.
getDecimalPlaces(double, double) - Static method in class ij.util.Tools
Returns the number of decimal places need to display two numbers.
getDefaultDirectory() - Static method in class ij.io.OpenDialog
Returns the current working directory, which may be null.
getDepth() - Method in class skyview.survey.Image
Get the number of planes in the image
getDepth() - Method in class skyview.survey.ProxyImage
Get the number of planes in the image
getDescription() - Method in interface skyview.Component
Get the description of this component.
getDescription() - Method in class skyview.geometry.Converter
 
getDescription() - Method in class skyview.geometry.csys.BesselianCoordinateSystem
 
getDescription() - Method in class skyview.geometry.csys.EclipticCoordinateSystem
Get a description of this component.
getDescription() - Method in class skyview.geometry.csys.GalacticCoordinateSystem
Get a description of the object.
getDescription() - Method in class skyview.geometry.csys.HelioeclipticCoordinateSystem
Get a description of the component.
getDescription() - Method in class skyview.geometry.csys.ICRSCoordinateSystem
Get a description of the object.
getDescription() - Method in class skyview.geometry.csys.JulianCoordinateSystem
Get a description of the object.
getDescription() - Method in class skyview.geometry.deedger.BoundaryAverage
Get a description of this object
getDescription() - Method in class skyview.geometry.deedger.BoundaryMedian
Get a description of this object
getDescription() - Method in class skyview.geometry.deedger.BoundaryMedianDSS2
Get a description of this object
getDescription() - Method in class skyview.geometry.Deedger
 
getDescription() - Method in class skyview.geometry.deedger.ImageMedian
Get a description of this object
getDescription() - Method in class skyview.geometry.DepthSampler
 
getDescription() - Method in class skyview.geometry.distorter.DSSDistorter.DSSInvDistorter
Get a description of this component
getDescription() - Method in class skyview.geometry.distorter.DSSDistorter
 
getDescription() - Method in class skyview.geometry.Distorter
What does this object do?
getDescription() - Method in class skyview.geometry.distorter.NeatDistorter
 
getDescription() - Method in class skyview.geometry.Mosaicker
Get a description of this component
getDescription() - Method in class skyview.geometry.projecter.AitProjecter.AitDeprojecter
Description of component
getDescription() - Method in class skyview.geometry.projecter.AitProjecter
A description of the component
getDescription() - Method in class skyview.geometry.projecter.CarProjecter.CarDeprojecter
Return a description of the component
getDescription() - Method in class skyview.geometry.projecter.CarProjecter
Return a description of the component
getDescription() - Method in class skyview.geometry.projecter.CscProjecter.CscDeprojecter
Get a description of the component
getDescription() - Method in class skyview.geometry.projecter.CscProjecter
Get a descrption of the component
getDescription() - Method in class skyview.geometry.projecter.SinProjecter
Get a description of the component
getDescription() - Method in class skyview.geometry.projecter.SinProjecter.SinDeprojecter
Get a description of the component
getDescription() - Method in class skyview.geometry.projecter.TanProjecter
Get a description of the component
getDescription() - Method in class skyview.geometry.projecter.TanProjecter.TanDeprojecter
Get a description of the component
getDescription() - Method in class skyview.geometry.projecter.ZeaProjecter
Get a description for the component
getDescription() - Method in class skyview.geometry.projecter.ZeaProjecter.ZeaDeprojecter
Get the description of the compontent
getDescription() - Method in class skyview.geometry.Rotater
Get a description of the component
getDescription() - Method in class skyview.geometry.sampler.ClipSampler
 
getDescription() - Method in class skyview.geometry.sampler.ComboSampler
 
getDescription() - Method in class skyview.geometry.sampler.LanczosSampler
 
getDescription() - Method in class skyview.geometry.sampler.LISampler
 
getDescription() - Method in class skyview.geometry.sampler.NNSampler
 
getDescription() - Method in class skyview.geometry.sampler.SplineSampler
 
getDescription() - Method in class skyview.geometry.Scaler
What is a descrition for this component?
getDescription() - Method in class skyview.geometry.spheredistorter.BesselianDistorter.BesselianInverseDistorter
 
getDescription() - Method in class skyview.geometry.spheredistorter.BesselianDistorter
 
getDescription() - Method in class skyview.geometry.SphereDistorter
What does this object do?
getDescription() - Method in class skyview.ij.IJProcessor
 
getDescription() - Method in class skyview.survey.Image
Get a description of the object
getDescription() - Method in class skyview.survey.UserSurvey
 
getDescription() - Method in class skyview.survey.XMLSurvey
Get a description of the component
getDescription() - Method in class skyview.vo.CatalogPostProcessor
 
getDescription() - Method in class skyview.vo.CatalogProcessor
 
getDescriptionString() - Method in class ij.io.FileSaver
Returns a string containing information about the specified image.
getDescrition() - Method in class skyview.geometry.distorter.NeatDistorter.NeatInvDistorter
 
getDimens() - Method in class nom.tam.fits.BinaryTable
 
getDimensions() - Method in class ij.ImagePlus
Returns the dimensions of this image (width, height, nChannels, nSlices, nFrames) as a 5 element int array.
getDimensions(Object) - Static method in class nom.tam.util.ArrayFuncs
Find the dimensions of an object.
getDir(String) - Method in class ij.io.Opener
 
getDir(String) - Static method in class ij.Macro
 
getDirectory(String) - Static method in class ij.IJ
Returns the path to the home ("user.home"), startup (ImageJ directory), plugins, macros, temp, current or image directory if title is "home", "startup", "plugins", "macros", "temp", "current" or "image", otherwise, displays a dialog and returns the path to the directory selected by the user.
getDirectory() - Method in class ij.io.DirectoryChooser
Returns the directory selected by the user.
getDirectory() - Method in class ij.io.OpenDialog
Returns the selected directory.
getDirectory() - Method in class ij.io.SaveDialog
Returns the selected directory.
getDirectory() - Method in class ij.macro.Functions
 
getDistorter() - Method in class skyview.geometry.Projection
Get any distortion in the plane associated with this projection.
getDistorter() - Method in class skyview.geometry.WCS
Get the plane distorter used in the projection (or null)
getDoScaling() - Static method in class ij.process.ImageConverter
Returns true if scaling is enabled.
getDouble(String, double) - Static method in class ij.Prefs
Looks up a real number in IJ_Props or IJ_Prefs.txt.
getDouble() - Method in class nom.tam.util.ByteParser
Read in the buffer until a double is read.
getDouble(int) - Method in class nom.tam.util.ByteParser
Look for a double in the buffer.
getDoubleValue(String) - Method in class nom.tam.fits.Header
Get the double value associated with the given key.
getDoubleValue(String, double) - Method in class nom.tam.fits.Header
Get the double value associated with the given key.
getDummyHDU() - Static method in class nom.tam.fits.BasicHDU
 
getEdgeAdjustments() - Method in class skyview.executive.Imager
Get any adjustments made to image intensities to minimize edge effects.
getEditor() - Method in class ij.plugin.NewPlugin
Returns the Editor the newly created macro or plugin was opened in.
getElement(int, int) - Method in class nom.tam.fits.AsciiTable
Get a single element as a one-d array.
getElement(int, int) - Method in class nom.tam.fits.BinaryTable
Get a particular element from the table.
getElement(int, int) - Method in interface nom.tam.fits.TableData
 
getElement(int, int) - Method in class nom.tam.fits.TableHDU
 
getElement(int, int) - Method in class nom.tam.util.ColumnTable
Get a element of the table.
getElement(int, int) - Method in interface nom.tam.util.DataTable
 
getEnteredText() - Method in class skyview.request.SourceCoordinates
get coordinates in hh mm ss format
getEpoch() - Method in class nom.tam.fits.BasicHDU
Deprecated. Replaced by getEquinox
getEquinox() - Method in class nom.tam.fits.BasicHDU
Get the equinox in years for the celestial coordinate system in which positions given in either the header or data are expressed.
getEquinox() - Method in class skyview.request.SourceCoordinates
returns equinox of center coordinates
getErrorMessage() - Method in class ij.gui.GenericDialog
Returns an error message if getNextNumber was unable to convert a string into a number, otherwise, returns null.
getFD() - Method in class nom.tam.util.BufferedFile
Get the file descriptor associated with this stream.
getFeretsDiameter() - Method in class ij.gui.OvalRoi
Returns Feret's diameter, the greatest distance between any two points along the ROI boundary.
getFeretsDiameter() - Method in class ij.gui.PolygonRoi
Returns Feret's diameter, the greatest distance between any two points along the ROI boundary.
getFeretsDiameter() - Method in class ij.gui.Roi
Returns Feret's diameter, the greatest distance between any two points along the ROI boundary.
getFeretsDiameter() - Method in class ij.gui.ShapeRoi
Returns the maximum Feret diameter (i.e., the largest distance between the shape's boundaries).
getFileInfo() - Method in class ij.ImagePlus
Returns a FileInfo object containing information, including the pixel array, needed to save this image.
getFileInfo() - Method in class ij.io.ImportDialog
Displays the dialog and returns a FileInfo object that can be used to open the image.
getFileName() - Method in class ij.io.OpenDialog
Returns the selected file name.
getFileName() - Method in class ij.io.SaveDialog
Returns the selected file name.
getFileOffset() - Method in class nom.tam.fits.BasicHDU
Get the starting offset of the HDU
getFileOffset() - Method in class nom.tam.fits.Data
Get the file offset
getFileOffset() - Method in interface nom.tam.fits.FitsElement
Get the byte at which this element begins.
getFileOffset() - Method in class nom.tam.fits.FitsHeap
Get the file offset of the heap
getFileOffset() - Method in class nom.tam.fits.Header
Get the offset of this header
getFilePointer() - Method in class ij.io.RandomAccessStream
 
getFilePointer() - Method in class nom.tam.util.BufferedFile
Get the current offset into the file.
getFilePointer() - Method in interface nom.tam.util.RandomAccess
Get the current position in the stream
getFileSeparator() - Static method in class ij.Prefs
Returns the file.separator system property.
getFileType(String) - Method in class ij.io.Opener
Attempts to determine the image file type by looking for 'magic numbers' and the file name extension.
getFitGoodness() - Method in class ij.measure.CurveFitter
Get a measure of "goodness of fit" where 1.0 is best.
getFitsDateString() - Static method in class nom.tam.fits.FitsDate
Return the current date in FITS date format
getFitsDateString(Date) - Static method in class nom.tam.fits.FitsDate
Create FITS format date string Java Date object.
getFitsDateString(Date, boolean) - Static method in class nom.tam.fits.FitsDate
Create FITS format date string.
getFixedMax() - Static method in class ij.gui.ProfilePlot
Returns the profile plot y-axis max.
getFixedMin() - Static method in class ij.gui.ProfilePlot
Returns the profile plot y-axis min.
getFlatColumns() - Method in class nom.tam.fits.BinaryTable
 
getFlattenedColumn(int) - Method in class nom.tam.fits.BinaryTable
Get a column in flattened format.
getFloat() - Method in class nom.tam.util.ByteParser
Get a floating point value from the buffer.
getFloat(int) - Method in class nom.tam.util.ByteParser
Get a floating point value in a region of the buffer
getFloatValue(String, float) - Method in class nom.tam.fits.Header
Get the float value associated with the given key.
getFloatValue(String) - Method in class nom.tam.fits.Header
Get the float value associated with the given key.
getFont() - Static method in class ij.gui.TextRoi
Returns the name of the current font.
getFontMetrics() - Method in class ij.process.ImageProcessor
Returns the current FontMetrics.
getForegroundColor() - Static method in class ij.gui.Toolbar
 
getFrame(String) - Static method in class ij.WindowManager
Returns the frame with the specified title or null if a frame with that title is not found.
getFrameRate() - Static method in class ij.plugin.Animator
Returns the current animation speed in frames per second.
getFreeColumn(String) - Method in class ij.measure.ResultsTable
Sets the heading of the the first available column and returns that column's index.
getFrontWindow() - Static method in class ij.WindowManager
Returns the front most window or null.
getFunction() - Method in class ij.measure.Calibration
Returns the calibration function ID.
getGlobalCalibration() - Method in class ij.ImagePlus
Returns the system-wide calibration, or null.
getGlobals() - Method in class ij.macro.Program
 
getGreens() - Method in class ij.LookUpTable
 
getGroupCount() - Method in class nom.tam.fits.BasicHDU
 
getHDU(int) - Method in class nom.tam.fits.Fits
Return the n'th HDU.
getHeader() - Method in class nom.tam.fits.BasicHDU
Get the associated header
getHeader() - Method in class skyview.survey.FitsImage
 
getHeaderNaxis() - Method in class skyview.geometry.WCS
 
getHeapOffset() - Method in class nom.tam.fits.BinaryTable
What is the offset to the heap
getHeapSize() - Method in class nom.tam.fits.BinaryTable
What is the size of the heap -- including the offset from the end of the table data.
getHeight() - Method in class ij.ImagePlus
 
getHeight() - Method in class ij.ImageStack
 
getHeight() - Method in class ij.process.ImageProcessor
Returns the height of this image in pixels.
getHeight() - Method in class skyview.survey.Image
Get the height of the image
getHeight() - Method in class skyview.survey.ProxyImage
Get the height of the image
getHigherZoomLevel(double) - Static method in class ij.gui.ImageCanvas
 
getHistogram() - Method in class ij.gui.HistogramWindow
 
getHistogram() - Method in class ij.process.ByteProcessor
 
getHistogram(ImageProcessor) - Method in class ij.process.ByteProcessor
 
getHistogram() - Method in class ij.process.ColorProcessor
 
getHistogram(ImageProcessor) - Method in class ij.process.ColorProcessor
 
getHistogram() - Method in class ij.process.FloatProcessor
Not implemented.
getHistogram() - Method in class ij.process.ImageProcessor
Returns the histogram of the image or ROI.
getHistogram() - Method in class ij.process.ShortProcessor
Returns 65536 bin histogram of the current ROI, which can be non-rectangular.
getHistogramMax() - Method in class ij.process.ImageProcessor
Returns the maximum histogram value used for histograms of float images.
getHistogramMin() - Method in class ij.process.ImageProcessor
Returns the minimum histogram value used for histograms of float images.
getHistogramSize() - Method in class ij.process.ImageProcessor
Returns the number of float image histogram bins.
getHomeDir() - Static method in class ij.Prefs
Returns the path to the ImageJ directory.
getHSB(byte[], byte[], byte[]) - Method in class ij.process.ColorProcessor
Returns hue, saturation and brightness in 3 byte arrays.
getID() - Method in class ij.ImagePlus
Returns this image's unique numeric ID.
getIDList() - Static method in class ij.WindowManager
Returns a list of the IDs of open images.
getIDs() - Method in class skyview.vo.ConeQuerier
Get the specified IDs
getImage() - Static method in class ij.IJ
Returns a reference to the active image.
getImage() - Method in class ij.ImagePlus
Returns the current AWT image.
getImage(int) - Static method in class ij.WindowManager
For IDs less than zero, returns the ImagePlus with the specified ID.
getImage(String) - Static method in class ij.WindowManager
Returns the first image that has the specified title or null if it is not found.
getImage(Image, double[]) - Method in class skyview.geometry.imagefinder.Border
Convert an input unit vector to a position in an image.
getImage() - Method in class skyview.survey.HDecompressor
Get decompressed image as a one-d array of ints.
getImageArray() - Method in class ij.ImageStack
Returns the stack as an array of 1D pixel arrays.
getImageCount() - Static method in class ij.WindowManager
Returns the number of open images.
getImageData() - Method in class skyview.executive.Imager
Get the output data as 1-d double array
getImageInfo(ImagePlus, ImageProcessor) - Method in class ij.plugin.filter.Info
 
getImagePlus() - Method in class ij.gui.ImageWindow
 
getImagePlus() - Method in class ij.gui.Plot
Returns the plot as an ImagePlus.
getImages(double, double, double, ArrayList<String>) - Method in class skyview.survey.DSS2ImageGenerator
 
getImages(double, double, double, ArrayList<String>) - Method in interface skyview.survey.ImageGenerator
 
getImages(double, double, double, ArrayList<String>) - Method in class skyview.survey.SIAPGenerator
Get images from a SIAP service
getImages(Position, double) - Method in interface skyview.survey.Survey
Find a list of images that are within size of the given position.
getImages(double, double, double, ArrayList<String>) - Method in class skyview.survey.TwoMASSGenerator
Get images from a SIAP service
getImages(Position, double) - Method in class skyview.survey.UserSurvey
 
getImages(Position, double) - Method in class skyview.survey.XMLSurvey
Find candidate images from this survey.
getImageStack() - Method in class ij.ImagePlus
Returns the base image stack.
getImageStackSize() - Method in class ij.ImagePlus
If this is a stack, return the number of slices, else return 1.
getImagesURL() - Static method in class ij.Prefs
Returns the URL for the ImageJ sample images.
getInfo(boolean) - Method in class ij.macro.Functions
 
getInitialMagnification() - Method in class ij.gui.ImageWindow
 
getInputDimension() - Method in class skyview.geometry.Converter
Get the dimensionality of the input vectors.
getInputDimension() - Method in class skyview.geometry.Deprojecter
What is the input dimensionality of a deprojecter?
getInputDimension() - Method in class skyview.geometry.Distorter
What is the input dimensionality of a Distorter?
getInputDimension() - Method in class skyview.geometry.Projecter
What is the input dimensionality of a projecter?
getInputDimension() - Method in class skyview.geometry.Rotater
Get the input dimension to a Rotater
getInputDimension() - Method in class skyview.geometry.Scaler
What is the dimensionality of the input to a Scaler
getInputDimension() - Method in class skyview.geometry.SphereDistorter
What is the input dimensionality of a Distorter?
getInputDimension() - Method in class skyview.geometry.Transformer
Get the dimensionality of the input vectors.
getInsets() - Method in class ij.gui.GenericDialog
 
getInsets() - Method in class ij.gui.ImageWindow
Override Container getInsets() to make room for some text above the image.
getInstance() - Static method in class ij.gui.Toolbar
Returns a reference to the ImageJ toolbar.
getInstance() - Static method in class ij.IJ
Returns a reference to the "ImageJ" frame.
getInstance() - Static method in class ij.macro.Interpreter
 
getInstance() - Static method in class ij.plugin.frame.RoiManager
Returns a reference to the ROI Manager or null if it is not open.
getInstrument() - Method in class nom.tam.fits.BasicHDU
Get the name of the instrument which was used to acquire the data in this FITS file.
getInt(String, int) - Static method in class ij.Prefs
Finds an int in IJ_Props or IJ_Prefs.txt.
getInt(int) - Method in class nom.tam.util.ByteParser
Convert a region of the buffer to an integer
getInt() - Method in class nom.tam.util.ByteParser
Look for an integer at the beginning of the buffer
getInterpolate() - Method in class ij.process.ImageProcessor
Returns the value of the interpolate field.
getInterpolatedPixel(double, double) - Method in class ij.process.ByteProcessor
Uses bilinear interpolation to find the pixel value at real coordinates (x,y).
getInterpolatedPixel(double, double) - Method in class ij.process.ColorProcessor
Calls getPixelValue(x,y).
getInterpolatedPixel(double, double) - Method in class ij.process.FloatProcessor
Uses bilinear interpolation to find the pixel value at real coordinates (x,y).
getInterpolatedPixel(double, double) - Method in class ij.process.ImageProcessor
Uses bilinear interpolation to find the pixel value at real coordinates (x,y).
getInterpolatedPixel(double, double) - Method in class ij.process.ShortProcessor
Uses bilinear interpolation to find the pixel value at real coordinates (x,y).
getInterpolatedRGBPixel(double, double) - Method in class ij.process.ColorProcessor
Uses bilinear interpolation to find the pixel value at real coordinates (x,y).
getInterpolatedValue(double, double) - Method in class ij.process.ImageProcessor
Uses bilinear interpolation to find the pixel value at real coordinates (x,y).
getIntValue(String, int) - Method in class nom.tam.fits.Header
Get the value associated with the key as an int.
getIntValue(String) - Method in class nom.tam.fits.Header
Get the int value associated with the given key.
getIterations() - Method in class ij.measure.CurveFitter
Get number of iterations performed
getKernel() - Method in class nom.tam.fits.BasicHDU
Get the non-FITS data object
getKernel() - Method in class nom.tam.fits.Data
Return the non-FITS data object
getKey(int) - Method in class nom.tam.fits.Header
Deprecated. An iterator should be used for sequential access to the header.
getKey() - Method in class nom.tam.fits.HeaderCard
Return the keyword from this card
getKeys() - Static method in class skyview.executive.Settings
Return the array of keys in the current settings
getLabel(int) - Method in class ij.measure.ResultsTable
Returns the label of the specified row.
getLabels() - Method in class skyview.data.Gridder
Get the labels for the lines
getLastBatchModeImage() - Static method in class ij.macro.Interpreter
 
getLastProcessor() - Static method in class skyview.vo.CatalogProcessor
 
getLat() - Method in class skyview.executive.Imager
Get the central latitude/declination of the output image
getLength() - Method in class ij.gui.Line
Returns the length of this line.
getLength() - Method in class ij.gui.OvalRoi
Returns the perimeter length.
getLength() - Method in class ij.gui.PolygonRoi
Returns the perimeter (for ROIs) or length (for lines).
getLength() - Method in class ij.gui.Roi
Returns the perimeter length.
getLength() - Method in class ij.gui.ShapeRoi
Returns the length of this shape (perimeter, if shape is closed).
getLine(double, double, double, double) - Method in class ij.process.ImageProcessor
Returns an array containing the pixel values along the line starting at (x1,y1) and ending at (x2,y2).
getLine(int) - Method in class ij.text.TextPanel
Returns the specified line as a string.
getLineCount() - Method in class ij.text.TextPanel
Returns the number of lines of text in this TextPanel.
getLines() - Method in class skyview.data.Gridder
Get the line points
getList() - Method in class ij.plugin.frame.RoiManager
Returns the selection list.
getLocalCalibration() - Method in class ij.ImagePlus
Returns this image's local calibration, ignoring the "Global" calibration flag.
getLocationAsString(int, int) - Method in class ij.ImagePlus
Converts the current cursor location to a string.
getLon() - Method in class skyview.executive.Imager
Get the central longitude/RA of the output image
getLong(int) - Method in class nom.tam.util.ByteParser
Look for a long in a specified region of the buffer
getLongValue(String) - Method in class nom.tam.fits.Header
Get the long value associated with the given key.
getLongValue(String, long) - Method in class nom.tam.fits.Header
Get the long value associated with the given key.
getLowerZoomLevel(double) - Static method in class ij.gui.ImageCanvas
 
getLutUpdateMode() - Method in class ij.process.ImageProcessor
Returns the LUT update mode, which can be RED_LUT, BLACK_AND_WHITE_LUT, OVER_UNDER_LUT or NO_LUT_UPDATE.
getMacroCount() - Method in class ij.plugin.MacroInstaller
 
getMacroShortcuts() - Static method in class ij.Menus
Returns the hashtable that associates keyboard shortcuts with macros.
getMacrosMenu() - Static method in class ij.Menus
 
getMacrosPath() - Static method in class ij.Menus
Returns the path to the macros directory or null if the macros directory was not found.
getMagnification() - Method in class ij.gui.ImageCanvas
 
getMapSize() - Method in class ij.LookUpTable
 
getMask() - Method in class ij.gui.OvalRoi
 
getMask() - Method in class ij.gui.PointRoi
 
getMask() - Method in class ij.gui.PolygonRoi
Override Roi.nudge() to support splines.
getMask() - Method in class ij.gui.Roi
 
getMask() - Method in class ij.gui.ShapeRoi
Returns this ROI's mask pixels as a ByteProcessor with pixels "in" the mask set to white (255) and pixels "outside" the mask set to black (0).
getMask() - Method in class ij.ImagePlus
For images with irregular ROIs, returns a byte mask, otherwise, returns null.
getMask() - Method in class ij.process.ImageProcessor
For images with irregular ROIs, returns a mask, otherwise, returns null.
getMask(int, int) - Method in class ij.process.PolygonFiller
Returns a byte mask containing a filled version of the polygon.
getMaskArray() - Method in class ij.process.ImageProcessor
Returns the mask byte array, or null if there is no mask.
getMatrix() - Method in class skyview.geometry.Rotater
Return the double coefficients for the matrix
getMax() - Method in class ij.gui.ProfilePlot
Returns the calculated maximum value.
getMax(double[]) - Static method in class ij.measure.CurveFitter
Gets index of highest value in an array.
getMax() - Method in class ij.process.ByteProcessor
Returns the largest displayed pixel value.
getMax() - Method in class ij.process.ColorProcessor
Returns the largest displayed pixel value.
getMax() - Method in class ij.process.FloatProcessor
Returns the largest displayed pixel value.
getMax() - Method in class ij.process.ImageProcessor
Returns the largest displayed pixel value.
getMax() - Method in class ij.process.ShortProcessor
Returns the largest displayed pixel value.
getMaximumValue() - Method in class nom.tam.fits.BasicHDU
Return the minimum valid value in the array.
getMaxIterations() - Method in class ij.measure.CurveFitter
Get maximum number of iterations allowed
getMaxOutput() - Method in class skyview.util.Scaler
 
getMaxThreshold() - Method in class ij.process.ImageProcessor
Returns the upper threshold level.
getMaxVal() - Method in class skyview.util.Scaler
 
getMeasurements() - Static method in class ij.plugin.filter.Analyzer
 
getMemoryImage() - Method in class nom.tam.fits.ImageData.ImageDataTiler
 
getMemoryImage() - Method in class nom.tam.image.ImageTiler
See if we can get the image data from memory.
getMemorySetting() - Method in class ij.plugin.Memory
 
getMenuBar() - Static method in class ij.Menus
 
getMessage() - Method in class ij.gui.GenericDialog
Returns a reference to the Label or MultiLineLabel created by addMessage(), or null if addMessage() was not called.
getMin() - Method in class ij.gui.ProfilePlot
Returns the calculated minimum value.
getMin() - Method in class ij.process.ByteProcessor
Returns the smallest displayed pixel value.
getMin() - Method in class ij.process.ColorProcessor
Returns the smallest displayed pixel value.
getMin() - Method in class ij.process.FloatProcessor
Returns the smallest displayed pixel value.
getMin() - Method in class ij.process.ImageProcessor
Returns the smallest displayed pixel value.
getMin() - Method in class ij.process.ShortProcessor
Returns the smallest displayed pixel value.
getMinimumSize() - Method in class ij.gui.MultiLineLabel
 
getMinimumSize() - Method in class ij.gui.Toolbar
 
getMinimumSize() - Method in class ij.gui.TrimmedButton
 
getMinimumValue() - Method in class nom.tam.fits.BasicHDU
Return the minimum valid value in the array.
getMinMax(double[]) - Static method in class ij.util.Tools
 
getMinMax(float[]) - Static method in class ij.util.Tools
 
getMinOutput() - Method in class skyview.util.Scaler
 
getMinThreshold() - Method in class ij.process.ImageProcessor
Returns the lower threshold level.
getMinVal() - Method in class skyview.util.Scaler
 
getModifiers() - Method in class ij.gui.ImageCanvas
Returns the mouse event modifiers.
getName() - Method in class ij.gui.Roi
Returns the name of this ROI, or null.
getName(String) - Method in class ij.io.Opener
 
getName(String) - Static method in class ij.Macro
 
getName(String) - Method in class ij.plugin.ClassChecker
 
getName() - Method in class ij.plugin.TextReader
Returns the file name.
getName() - Method in interface skyview.Component
Get the name of this component.
getName() - Method in class skyview.geometry.Converter
 
getName() - Method in class skyview.geometry.csys.BesselianCoordinateSystem
 
getName() - Method in class skyview.geometry.csys.EclipticCoordinateSystem
Get the name of this component.
getName() - Method in class skyview.geometry.csys.GalacticCoordinateSystem
Get the name of this object.
getName() - Method in class skyview.geometry.csys.HelioeclipticCoordinateSystem
Get the name of the component.
getName() - Method in class skyview.geometry.csys.ICRSCoordinateSystem
Get the name of this object.
getName() - Method in class skyview.geometry.csys.JulianCoordinateSystem
Get the name of this object.
getName() - Method in class skyview.geometry.deedger.BoundaryAverage
Get a name for this object
getName() - Method in class skyview.geometry.deedger.BoundaryMedian
Get a name for this object
getName() - Method in class skyview.geometry.deedger.BoundaryMedianDSS2
Get a name for this object
getName() - Method in class skyview.geometry.Deedger
 
getName() - Method in class skyview.geometry.deedger.ImageMedian
Get a name for this object
getName() - Method in class skyview.geometry.DepthSampler
 
getName() - Method in class skyview.geometry.distorter.DSSDistorter.DSSInvDistorter
Get the name of this component
getName() - Method in class skyview.geometry.distorter.DSSDistorter
Get the name of this component
getName() - Method in class skyview.geometry.Distorter
A name for this object
getName() - Method in class skyview.geometry.distorter.NeatDistorter
 
getName() - Method in class skyview.geometry.distorter.NeatDistorter.NeatInvDistorter
 
getName() - Method in class skyview.geometry.Mosaicker
Get the name of this component
getName() - Method in class skyview.geometry.projecter.AitProjecter.AitDeprojecter
Name of component
getName() - Method in class skyview.geometry.projecter.AitProjecter
The name of the Component
getName() - Method in class skyview.geometry.projecter.CarProjecter.CarDeprojecter
Get the name of the compontent
getName() - Method in class skyview.geometry.projecter.CarProjecter
Get the name of the compontent
getName() - Method in class skyview.geometry.projecter.CscProjecter.CscDeprojecter
Get the name of the component
getName() - Method in class skyview.geometry.projecter.CscProjecter
Get the name of the component
getName() - Method in class skyview.geometry.projecter.SinProjecter
Get the name of the component
getName() - Method in class skyview.geometry.projecter.SinProjecter.SinDeprojecter
Get the name of the component
getName() - Method in class skyview.geometry.projecter.TanProjecter
Get the name of the compontent
getName() - Method in class skyview.geometry.projecter.TanProjecter.TanDeprojecter
Get the name of the component
getName() - Method in class skyview.geometry.projecter.ZeaProjecter
Get a name for the component
getName() - Method in class skyview.geometry.projecter.ZeaProjecter.ZeaDeprojecter
Get the name of the component
getName() - Method in class skyview.geometry.Rotater
Get the name of the component
getName() - Method in class skyview.geometry.sampler.ClipSampler
 
getName() - Method in class skyview.geometry.sampler.ComboSampler
 
getName() - Method in class skyview.geometry.sampler.LanczosSampler
 
getName() - Method in class skyview.geometry.sampler.LISampler
 
getName() - Method in class skyview.geometry.sampler.NNSampler
 
getName() - Method in class skyview.geometry.sampler.SplineSampler
 
getName() - Method in class skyview.geometry.Scaler
What is a name for this component?
getName() - Method in class skyview.geometry.spheredistorter.BesselianDistorter.BesselianInverseDistorter
 
getName() - Method in class skyview.geometry.spheredistorter.BesselianDistorter
 
getName() - Method in class skyview.geometry.SphereDistorter
A name for this object
getName() - Method in class skyview.ij.IJProcessor
 
getName() - Method in class skyview.survey.Image
Get the name of the image
getName() - Method in class skyview.survey.ProxyImage
Get the name of the image
getName() - Method in class skyview.survey.UserSurvey
 
getName() - Method in class skyview.survey.XMLSurvey
Get the name of the compontent
getName() - Method in class skyview.vo.CatalogPostProcessor
 
getName() - Method in class skyview.vo.CatalogProcessor
 
getNChannels() - Method in class ij.ImagePlus
Returns the number of channels.
getNCols() - Method in class nom.tam.fits.AsciiTable
Get the number of columns in the table
getNCols() - Method in class nom.tam.fits.BinaryTable
Get the number of columns in the table.
getNCols() - Method in interface nom.tam.fits.TableData
 
getNCols() - Method in class nom.tam.fits.TableHDU
Get the number of columns for this table
getNCols() - Method in class nom.tam.util.ColumnTable
Get the number of columns in the table.
getNCols() - Method in interface nom.tam.util.DataTable
 
getNCoordinates() - Method in class ij.gui.PolygonRoi
Returns the number of XY coordinates.
getNextBoolean() - Method in class ij.gui.GenericDialog
Returns the state of the next checkbox.
getNextChoice() - Method in class ij.gui.GenericDialog
Returns the selected item in the next popup menu.
getNextChoiceIndex() - Method in class ij.gui.GenericDialog
Returns the index of the selected item in the next popup menu.
getNextNumber() - Method in class ij.gui.GenericDialog
Returns the contents of the next numeric field.
getNextString() - Method in class ij.gui.GenericDialog
Returns the contents of the next text field.
getNextText() - Method in class ij.gui.GenericDialog
Returns the contents of the next text area.
getNFrames() - Method in class ij.ImagePlus
Returns the number of frames (time-points).
getNRows() - Method in class nom.tam.fits.AsciiTable
Get the number of rows in the table
getNRows() - Method in class nom.tam.fits.BinaryTable
Get the number of rows in the table
getNRows() - Method in interface nom.tam.fits.TableData
 
getNRows() - Method in class nom.tam.fits.TableHDU
Get the number of rows for this table
getNRows() - Method in class nom.tam.util.ColumnTable
Get the number of rows in the table.
getNRows() - Method in interface nom.tam.util.DataTable
 
getNSlices() - Method in class ij.ImagePlus
Returns the image depth (number of z-slices).
getNumber(String, double) - Static method in class ij.IJ
Allows the user to enter a number in a dialog box.
getNumberLength() - Method in class nom.tam.util.ByteParser
Get the number of characters used to parse the previous number (or the length of the previous String returned).
getNumberOfCards() - Method in class nom.tam.fits.Header
Find the number of cards in the header
getNumberOfHDUs() - Method in class nom.tam.fits.Fits
Get the current number of HDUs in the Fits object.
getNumberOfRows() - Method in class nom.tam.util.ColumnTable
Calculate the number of rows to read/write at a time.
getNumericFields() - Method in class ij.gui.GenericDialog
Returns the Vector containing the numeric TextFields.
getNumParams() - Method in class ij.measure.CurveFitter
Get number of parameters for current fit function
getNx() - Method in class skyview.survey.HDecompressor
Get the X-dimension of the decompressed image.
getNy() - Method in class skyview.survey.HDecompressor
Get the Y-dimension of the decompressed image.
getObject() - Method in class nom.tam.fits.BasicHDU
Get the name of the observed object in this FITS file.
getObjectName() - Method in class skyview.request.SourceCoordinates
returns center object name
getObservationDate() - Method in class nom.tam.fits.BasicHDU
Get the FITS file observation date as a Date object.
getObserver() - Method in class nom.tam.fits.BasicHDU
Get the name of the person who acquired the data in this FITS file.
getOffset(int[], int[]) - Static method in class nom.tam.image.ImageTiler
Get the offset of a given position.
getOffset() - Method in class nom.tam.util.ByteParser
Get the current offset
getOptions() - Static method in class ij.Macro
If a command started using run(name, options) is running, returns the options string, otherwise, returns null.
getOrigin() - Method in class nom.tam.fits.BasicHDU
Get the name of the organization which created this FITS file.
getOriginalFileInfo() - Method in class ij.ImagePlus
Returns the FileInfo object that was used to open this image.
getOutputDimension() - Method in class skyview.geometry.Converter
Get the dimensionality of the output vectors.
getOutputDimension() - Method in class skyview.geometry.Deprojecter
What is the output dimensionality of a deprojecter?
getOutputDimension() - Method in class skyview.geometry.Distorter
What is the output dimensionality of a Distorter?
getOutputDimension() - Method in class skyview.geometry.Projecter
What is the output dimensionality of a projecter?
getOutputDimension() - Method in class skyview.geometry.Rotater
Get the output dimension to a Rotater
getOutputDimension() - Method in class skyview.geometry.Scaler
What is the dimensionality of the output of a Scaler
getOutputDimension() - Method in class skyview.geometry.SphereDistorter
What is the output dimensionality of a Distorter?
getOutputDimension() - Method in class skyview.geometry.Transformer
Get the dimensionality of the output vectors.
getParameterCount() - Method in class nom.tam.fits.BasicHDU
 
getParams() - Method in class ij.measure.CurveFitter
Get the set of parameter values from the best corner of the simplex
getParams() - Method in class skyview.geometry.Scaler
 
getPasteMode() - Method in class ij.gui.Roi
Returns the current paste transfer mode, or NOT_PASTING (-1) if no paste operation is in progress.
getPixel(int, int) - Method in class ij.ImagePlus
Returns the pixel value at (x,y) as a 4 element array.
getPixel(int, int) - Method in class ij.process.ByteProcessor
 
getPixel(int, int) - Method in class ij.process.ColorProcessor
 
getPixel(int, int, int[]) - Method in class ij.process.ColorProcessor
Returns the 3 samples for the pixel at (x,y) in an array of int.
getPixel(int, int) - Method in class ij.process.FloatProcessor
Returns a pixel value that must be converted using Float.intBitsToFloat().
getPixel(int, int, int[]) - Method in class ij.process.FloatProcessor
Returns the value of the pixel at (x,y) in a one element int array.
getPixel(int, int) - Method in class ij.process.ImageProcessor
Returns the value of the pixel at (x,y).
getPixel(int, int, int[]) - Method in class ij.process.ImageProcessor
Returns the samples for the pixel at (x,y) in an int array.
getPixel(int, int) - Method in class ij.process.ShortProcessor
 
getPixelDepth() - Method in class skyview.executive.Imager
Get the energy depth of the output image
getPixelHeight() - Method in class skyview.executive.Imager
Get the height of the output image in pixels
getPixels() - Method in class ij.gui.Line
Returns the pixel values along this line.
getPixels(int) - Method in class ij.ImageStack
Returns the pixel array for the specified slice, were 1<=n<=nslices.
getPixels() - Method in class ij.process.ByteProcessor
Returns a reference to the byte array containing this image's pixel data.
getPixels() - Method in class ij.process.ColorProcessor
Returns a reference to the int array containing this image's pixel data.
getPixels() - Method in class ij.process.FloatProcessor
Returns a reference to the float array containing this image's pixel data.
getPixels() - Method in class ij.process.ImageProcessor
Returns a reference to this image's pixel array.
getPixels() - Method in class ij.process.ShortProcessor
Returns a reference to the short array containing this image's pixel data.
getPixels() - Method in class skyview.vo.CatalogProcessor
 
getPixelsCopy() - Method in class ij.process.ByteProcessor
Returns a reference to this image's snapshot (undo) byte array.
getPixelsCopy() - Method in class ij.process.ColorProcessor
 
getPixelsCopy() - Method in class ij.process.FloatProcessor
 
getPixelsCopy() - Method in class ij.process.ImageProcessor
Returns a reference to this image's snapshot (undo) array.
getPixelsCopy() - Method in class ij.process.ShortProcessor
Returns a reference to this image's snapshot (undo) array.
getPixelValue(int, int) - Method in class ij.process.ByteProcessor
 
getPixelValue(int, int) - Method in class ij.process.ColorProcessor
Converts the specified pixel to grayscale using the formula g=(r+g+b)/3 and returns it as a float.
getPixelValue(int, int) - Method in class ij.process.FloatProcessor
Returns the value of the pixel at (x,y) as a float.
getPixelValue(int, int) - Method in class ij.process.ImageProcessor
Returns the value of the pixel at (x,y).
getPixelValue(int, int) - Method in class ij.process.ShortProcessor
Returns the value of the pixel at (x,y) as a float.
getPixelWidth() - Method in class skyview.executive.Imager
Get the width of the output image in pixels
getPlotSize() - Method in class ij.gui.ProfilePlot
Returns the size of the plot that createWindow() creates.
getPlugins() - Static method in class ij.Menus
Returns a list of the plugins in the plugins menu.
getPlugInsPath() - Static method in class ij.Menus
Returns the path to the user plugins directory or null if the plugins directory was not found.
getPolygon() - Method in class ij.gui.Line
 
getPolygon() - Method in class ij.gui.OvalRoi
Returns this OvalRoi as a polygon.
getPolygon() - Method in class ij.gui.PolygonRoi
Returns this PolygonRoi as a Polygon.
getPolygon() - Method in class ij.gui.Roi
Returns the outline of this selection as a Polygon, or null if this is a straight line selection.
getPopupMenu() - Static method in class ij.Menus
 
getPort() - Static method in class ij.ImageJ
Returns the port that ImageJ checks on startup to see if another instance is running.
getPosition() - Method in class skyview.geometry.Position
Get the position in the standard (J2000) frame
getPosition(String) - Method in class skyview.geometry.Position
Get the position in a specified frame
getPositions() - Method in class skyview.vo.ConeQuerier
Get the array of position
getPowerSpectrum() - Method in class ij.process.FHT
Returns an 8-bit power spectrum, log-scaled to 1-254.
getPrecision() - Static method in class ij.plugin.filter.Analyzer
Returns the number of digits displayed to the right of decimal point.
getPreferredLocation() - Method in class ij.ImageJ
 
getPreferredSize() - Method in class ij.gui.ImageCanvas
 
getPreferredSize() - Method in class ij.gui.MultiLineLabel
 
getPreferredSize() - Method in class ij.gui.ProgressBar
 
getPreferredSize() - Method in class ij.gui.Toolbar
 
getPreferredSize() - Method in class ij.gui.TrimmedButton
 
getProcessor() - Method in class ij.gui.Plot
Returns the plot as an ImageProcessor.
getProcessor() - Method in class ij.ImagePlus
Returns a reference to the current ImageProcessor.
getProcessor(int) - Method in class ij.ImageStack
Returns an ImageProcessor for the specified slice, were 1<=n<=nslices.
getProfile() - Method in class ij.gui.ProfilePlot
Returns the profile plot data.
getProgressBar() - Method in class ij.ImageJ
 
getProjecter() - Method in class skyview.geometry.Projection
Get the projection algorithm associated with this rotation.
getProjection() - Method in class ij.plugin.ZProjector
Retrieve results of most recent projection operation.
getProjection() - Method in class skyview.geometry.WCS
Get the projection used in the WCS
getProperties() - Method in class ij.ImagePlus
Returns this image's Properties.
getProperty(String) - Method in class ij.ImagePlus
Returns the property associated with 'key'.
getQuality() - Static method in class ij.plugin.JpegWriter
 
getRawLength() - Method in class ij.gui.Line
Returns the length of this line in pixels.
getRawValue(double) - Method in class ij.measure.Calibration
Converts a density calibrated value into a raw pixel value.
getRedirectImage(ImagePlus) - Static method in class ij.plugin.filter.Analyzer
Returns the image selected in the "Redirect To:" popup menu of the Analyze/Set Measurements dialog or null if "None" is selected, the image was not found or the image is not the same size as currentImage.
getReds() - Method in class ij.LookUpTable
 
getReference() - Method in class nom.tam.fits.BasicHDU
Return the citation of a reference where the data associated with this header are published.
getResiduals() - Method in class ij.measure.CurveFitter
Returns residuals array ie.
getResolver() - Method in class skyview.request.SourceCoordinates
returns name resolver
getResource(String) - Method in class ij.io.PluginClassLoader
Returns a resource from the path or JAR files as a URL
getResourceAsStream(String) - Method in class ij.io.PluginClassLoader
Returns a resource from the path or JAR files as an InputStream
getResourceOrFile(String) - Static method in class skyview.survey.Util
Open a stream from a resource or a file.
getRestarts() - Method in class ij.measure.CurveFitter
Get number of simplex restarts to do
getResultsTable() - Static method in class ij.measure.ResultsTable
Returns the ResultsTable used by the Measure command.
getResultsTable() - Static method in class ij.plugin.filter.Analyzer
Returns the ImageJ results table.
getResultString() - Method in class ij.measure.CurveFitter
Get a string description of the curve fitting results for easy output.
getRGB(byte[], byte[], byte[]) - Method in class ij.process.ColorProcessor
Returns the red, green and blue planes as 3 byte arrays.
getRGBRow(ImageStack, int, int, int, int, int, int[]) - Method in class ij.plugin.filter.Projector
 
getRoi() - Method in class ij.ImagePlus
 
getRoi() - Method in class ij.ImageStack
 
getRoi() - Method in class ij.io.RoiDecoder
Returns the ROI.
getRoi() - Method in class ij.process.ImageProcessor
Returns a Rectangle that represents the current region of interest.
getRois() - Method in class ij.gui.ShapeRoi
Converts a Shape into Roi object(s).
getROIs() - Method in class ij.plugin.frame.RoiManager
Returns the ROI Hashtable.
getRoot() - Method in class ij.plugin.ControlPanel
 
getRotater() - Method in class skyview.geometry.CoordinateSystem
Get the rotation associated with the projection.
getRotater() - Method in class skyview.geometry.csys.BesselianCoordinateSystem
 
getRotater() - Method in class skyview.geometry.csys.EclipticCoordinateSystem
 
getRotater() - Method in class skyview.geometry.csys.GalacticCoordinateSystem
Return the rotation associated with the coordinate system.
getRotater() - Method in class skyview.geometry.csys.ICRSCoordinateSystem
Return the rotation associated with the coordinate system.
getRotater() - Method in class skyview.geometry.csys.JulianCoordinateSystem
Return the rotation associated with the coordinate system.
getRotater() - Method in class skyview.geometry.Projection
Get the rotation that needs to be performed before the rotation.
getRow(int, int, int[], int) - Method in class ij.process.ImageProcessor
Returns the pixel values along the horizontal line starting at (x,y).
getRow(int) - Method in class nom.tam.fits.AsciiTable
Get a row.
getRow(int) - Method in class nom.tam.fits.BinaryTable
Get a given row
getRow(int) - Method in interface nom.tam.fits.TableData
 
getRow(int) - Method in class nom.tam.fits.TableHDU
 
getRow(int) - Method in class nom.tam.util.ColumnTable
Get a row of data.
getRow(int) - Method in interface nom.tam.util.DataTable
 
getRowAsString(int) - Method in class ij.measure.ResultsTable
Returns a tab-delimited string representing the given row, where 0<=row<=counter-1.
getRowLen() - Method in class nom.tam.fits.AsciiTable
Get the number of bytes in a row
getRSquared() - Method in class ij.measure.CurveFitter
Returns R^2, where 1.0 is best.
getSamplerName() - Method in class skyview.executive.Imager
Get the sampler name.
getSavedImages() - Static method in class skyview.ij.IJProcessor
 
getScale() - Method in class skyview.data.Gridder
 
getScale() - Method in class skyview.geometry.WCS
Get the nominal scale of the WCS.
getScaler() - Method in class skyview.executive.Imager
Get the Scaler used for the output image.
getScaler() - Method in class skyview.geometry.WCS
Get the linear scaler used in the projection
getSD() - Method in class ij.measure.CurveFitter
SD = sqrt(sum of residuals squared / number of params+1)
getSD() - Static method in class ij.plugin.filter.Filters
Returns the default standard deviation used by Process/Noise/Add Specified Noise.
getSelectionEnd() - Method in class ij.text.TextPanel
Returns the index of the last selected line, or -1 if there is no slection.
getSelectionStart() - Method in class ij.text.TextPanel
Returns the index of the first selected line, or -1 if there is no slection.
getShapeAsArray() - Method in class ij.gui.ShapeRoi
Retrieves the end points and control points of the path as a float array.
getShapeRoi() - Method in class ij.io.RoiDecoder
 
getShortcuts() - Static method in class ij.Menus
Returns the hashtable that associates shortcuts with commands.
getShortSliceLabel(int) - Method in class ij.ImageStack
Returns a shortened version (up to the first 60 characters or first newline and suffix removed) of the label of the specified slice.
getShortTitle() - Method in class ij.ImagePlus
Returns a shortened version of image name that does not include spaces or a file name extension.
getSize() - Static method in class ij.gui.TextRoi
Returns the current font size.
getSize() - Method in class ij.ImageStack
Returns the number of slices in this stack.
getSize() - Method in class nom.tam.fits.BasicHDU
Get the total size in bytes of the HDU.
getSize() - Method in class nom.tam.fits.Data
Get the size of the data element in bytes
getSize() - Method in interface nom.tam.fits.FitsElement
The size of this element in bytes
getSize() - Method in class nom.tam.fits.FitsHeap
Return the size of the heap using the more bean compatbile format
getSize() - Method in class nom.tam.fits.Header
Get the size of the header in bytes
getSize() - Method in class skyview.vo.ConeQuerier
Get the size of the request
getSizes() - Method in class nom.tam.fits.BinaryTable
 
getSizes() - Method in class nom.tam.util.ColumnTable
 
getSliceLabel(int) - Method in class ij.ImageStack
Returns the label of the specified slice, were 1<=n<=nslices.
getSliceLabels() - Method in class ij.ImageStack
Returns the slice labels as an array of Strings.
getSliders() - Method in class ij.gui.GenericDialog
Returns the sliders (Scrollbars).
getSnapshotPixels() - Method in class ij.process.ColorProcessor
Returns a reference to the snapshot pixel array.
getSpecialEpoch() - Method in class skyview.request.SourceCoordinates
returns special epoch of center coordinates
getSphereDistorter() - Method in class skyview.geometry.CoordinateSystem
Get the distortion associated with the projection.
getSphereDistorter() - Method in class skyview.geometry.csys.BesselianCoordinateSystem
 
getSrcRect() - Method in class ij.gui.ImageCanvas
 
getStack() - Method in class ij.ImagePlus
Returns the image stack.
getStackSize() - Method in class ij.ImagePlus
If this is a stack, return the number of slices, else return 1.
getStartTime() - Method in class ij.ImagePlus
Returns the time in milliseconds when startTiming() was last called.
getState() - Method in class ij.gui.Roi
 
getStatistics() - Method in class ij.ImagePlus
Returns an ImageStatistics object generated using the standard measurement options (area, mean, mode, min and max).
getStatistics(int) - Method in class ij.ImagePlus
Returns an ImageStatistics object generated using the specified measurement options.
getStatistics(int, int) - Method in class ij.ImagePlus
Returns an ImageStatistics object generated using the specified measurement options and histogram bin count.
getStatistics(int, int, double, double) - Method in class ij.ImagePlus
Returns an ImageStatistics object generated using the specified measurement options, histogram bin count and histogram range.
getStatistics(ImageProcessor, int, Calibration) - Static method in class ij.process.ImageStatistics
 
getStream() - Method in class nom.tam.fits.Fits
Get the data stream used for the Fits Data.
getString(String, String) - Static method in class ij.IJ
Allows the user to enter a string in a dialog box.
getString(String) - Static method in class ij.Prefs
Finds an string in IJ_Props or IJ_Prefs.txt.
getString(String, String) - Static method in class ij.Prefs
Finds an string in IJ_Props or IJ_Prefs.txt.
getString(int) - Method in class nom.tam.util.ByteParser
Get a string
getStringFields() - Method in class ij.gui.GenericDialog
Returns the Vector containing the string TextFields.
getStringValue(String) - Method in class nom.tam.fits.Header
Get the String value associated with the given key.
getStringWidth(String) - Method in class ij.process.ImageProcessor
Returns the width in pixels of the specified string.
getStringWidth(String, FontMetrics, Graphics) - Static method in class ij.util.Java2
 
getStyle() - Static method in class ij.gui.TextRoi
Returns the current font style.
getSumResidualsSqr() - Method in class ij.measure.CurveFitter
 
getSurvey() - Method in class skyview.executive.Imager
Get the current survey being processed
getSurveys() - Method in interface skyview.survey.SurveyFinder
What are the IDs available?
getSurveys() - Method in class skyview.survey.XMLSurveyFinder
What surveys do we know about?
getSurveysFromManifest() - Method in class skyview.survey.XMLSurveyFinder
Get surveys from a user manifest.
getSurveysFromRoot() - Method in class skyview.survey.XMLSurveyFinder
Get the surveys in the document root area
getSurveysFromUser() - Method in class skyview.survey.XMLSurveyFinder
Get user specified surveys
getSymbols() - Method in class skyview.vo.CatalogProcessor
 
getSymbolTable() - Method in class ij.macro.Program
 
getTDims(String) - Static method in class nom.tam.fits.BinaryTable
Parse the TDIMS value.
getTelescope() - Method in class nom.tam.fits.BasicHDU
Get the name of the telescope which was used to acquire the data in this FITS file.
getTempCurrentImage() - Static method in class ij.WindowManager
Returns tempCurrentImage, which may be null.
getText() - Method in class ij.plugin.frame.Editor
 
getText() - Method in class ij.text.TextPanel
Returns all the text as a string.
getTextArea1() - Method in class ij.gui.GenericDialog
Returns a reference to textArea1.
getTextArea2() - Method in class ij.gui.GenericDialog
Returns a reference to textArea2.
getTextPanel() - Static method in class ij.IJ
Returns a reference to the "Results" window TextPanel.
getTextPanel() - Method in class ij.text.TextWindow
Returns a reference to this TextWindow's TextPanel.
getTiffInfo() - Method in class ij.io.TiffDecoder
 
getTile(int[], int[]) - Method in class nom.tam.image.ImageTiler
Get a subset of the image.
getTile(Object, int[], int[]) - Method in class nom.tam.image.ImageTiler
Get a tile, filling in a prespecified array.
getTiler() - Method in class nom.tam.fits.ImageData
 
getTiler() - Method in class nom.tam.fits.ImageHDU
 
getTitle() - Method in class ij.ImagePlus
Returns the image name.
getToolId() - Static method in class ij.gui.Toolbar
Returns the ID of the current tool (Toolbar.RECTANGLE, Toolbar.OVAL, etc.).
getTransformer() - Method in class skyview.survey.Image
Get the transformation to the pixel coordinates of the image
getTransformer() - Method in class skyview.survey.ProxyImage
Get the transformation to the pixel coordinates of the image
getTransparentPixel() - Method in class ij.io.GifEncoder
 
getTrimmedString(String) - Method in class nom.tam.fits.BasicHDU
Get the String value associated with keyword.
getTrueSize() - Method in class nom.tam.fits.AsciiTable
Return the size of the data section
getTrueSize() - Method in class nom.tam.fits.BinaryTable
Get the size of the data in the HDU sans padding.
getTrueSize() - Method in class nom.tam.fits.ImageData
Get the size in bytes of the data
getTrueSize() - Method in class nom.tam.fits.RandomGroupsData
Get the size of the actual data element.
getTrueSize() - Method in class nom.tam.fits.UndefinedData
Get the size in bytes of the data
getType() - Method in class ij.gui.Roi
 
getType() - Method in class ij.ImagePlus
Returns the current image type (ImagePlus.GRAY8, ImagePlus.GRAY16, ImagePlus.GRAY32, ImagePlus.COLOR_256 or ImagePlus.COLOR_RGB).
getTypeAsString() - Method in class ij.gui.Roi
Convenience method that converts Roi type to a human-readable form.
getTypes() - Method in class nom.tam.fits.BinaryTable
 
getTypes() - Method in class nom.tam.util.ColumnTable
Get the characters describing the base classes of the columns.
getUMeans() - Static method in class ij.plugin.filter.Analyzer
Returns an array containing the first 20 uncalibrated means.
getUniqueName(String) - Static method in class ij.WindowManager
Returns a unique name by adding, before the extension, -1, -2, etc.
getUnit() - Method in class ij.measure.Calibration
Returns the distance unit (e.g.
getUnits() - Method in class ij.measure.Calibration
Returns the plural form of the distance unit (e.g.
getURL(String, String) - Static method in class skyview.survey.Util
Copy a URL to a local file
getURL() - Method in class skyview.vo.ConeQuerier
Get the URL used.
getUseDefault() - Method in class skyview.util.Scaler
 
getUseHierarch() - Static method in class nom.tam.fits.FitsFactory
Are we processing HIERARCH style keywords
getValue(String) - Method in class ij.gui.GenericDialog
 
getValue(String, String, String) - Static method in class ij.Macro
 
getValue(int, int) - Method in class ij.measure.ResultsTable
Obsolete, replaced by getValueAsDouble.
getValue(String, int) - Method in class ij.measure.ResultsTable
Returns the value of the specified column and row, where column is the column heading and row is a number greater than or equal zero and less than value returned by getCounter().
getValue() - Method in class nom.tam.fits.HeaderCard
Return the value from this card
getValueAsDouble(int, int) - Method in class ij.measure.ResultsTable
Returns the value of the given column and row, where column must be greater than or equal zero and less than MAX_COLUMNS and row must be greater than or equal zero and less than counter.
getValueUnit() - Method in class ij.measure.Calibration
Returns the value unit.
getVersion() - Static method in class ij.IJ
Returns the ImageJ version number as a string.
getVersion() - Method in class ij.plugin.ControlPanel
 
getWCS() - Method in class skyview.survey.Image
Get the WCS associated with the image.
getWCS() - Method in class skyview.survey.ProxyImage
Get the WCS associated with the image.
getWeightingFactors() - Static method in class ij.process.ColorProcessor
Returns the three weighting factors used by getPixelValue(), getHistogram() and convertToByte() to do color conversions.
getWidth() - Static method in class ij.gui.Line
 
getWidth() - Method in class ij.ImagePlus
 
getWidth() - Method in class ij.ImageStack
 
getWidth() - Method in class ij.process.ImageProcessor
Returns the width of this image in pixels.
getWidth() - Method in class skyview.survey.Image
Get the width of the image
getWidth() - Method in class skyview.survey.ProxyImage
Get the width of the image
getWindow() - Method in class ij.ImagePlus
Returns the ImageWindow that is being used to display this image.
getWindowCount() - Static method in class ij.WindowManager
Returns the number of open image windows.
getX(double) - Method in class ij.measure.Calibration
Converts a x-coodinate in pixels to physical units (e.g.
getX() - Method in class skyview.request.SourceCoordinates
get center coordinates in XXX.XX (decimal) format
getXCoordinates() - Method in class ij.gui.PolygonRoi
Returns this ROI's X-coordinates, which are relative to origin of the bounding box.
getXhhmmss() - Method in class skyview.request.SourceCoordinates
returns center coordinate in hh mm ss format
getXValues() - Method in class ij.gui.PlotWindow
 
getY(double) - Method in class ij.measure.Calibration
Converts a y-coodinate in pixels to physical units (e.g.
getY(double, int) - Method in class ij.measure.Calibration
Converts a y-coodinate in pixels to physical units (e.g.
getY() - Method in class skyview.request.SourceCoordinates
get center coordinate in XXX.XX (decimal) format
getYCoordinates() - Method in class ij.gui.PolygonRoi
Returns this ROI's Y-coordinates, which are relative to origin of the bounding box.
getYhhmmss() - Method in class skyview.request.SourceCoordinates
get center coordinate in hh mm ss format
getYValues() - Method in class ij.gui.PlotWindow
 
getZ(double) - Method in class ij.measure.Calibration
Converts a z-coodinate in pixels to physical units (e.g.
GIF - Static variable in class ij.io.Opener
 
GIF_OR_JPG - Static variable in class ij.io.FileInfo
 
GifEncoder - Class in ij.io
GifEncoder - writes out an image as a GIF.
GifEncoder(int, int, byte[], byte[], byte[], byte[]) - Constructor for class ij.io.GifEncoder
Constructs a new GifEncoder.
GifEncoder(Image) - Constructor for class ij.io.GifEncoder
Constructs a new GifEncoder using an 8-bit AWT Image.
gLUT1 - Variable in class ij.process.ImageProcessor
 
gLUT2 - Variable in class ij.process.ImageProcessor
 
GRAY12_UNSIGNED - Static variable in class ij.io.FileInfo
12-bit unsigned integer (0-4095).
GRAY16 - Static variable in class ij.gui.NewImage
 
GRAY16 - Static variable in class ij.ImagePlus
16-bit grayscale (unsigned)
GRAY16_SIGNED - Static variable in class ij.io.FileInfo
16-bit signed integer (-32768-32767).
GRAY16_UNSIGNED - Static variable in class ij.io.FileInfo
16-bit unsigned integer (0-65535).
GRAY24_UNSIGNED - Static variable in class ij.io.FileInfo
24-bit unsigned integer.
GRAY32 - Static variable in class ij.gui.NewImage
 
GRAY32 - Static variable in class ij.ImagePlus
32-bit floating-point grayscale
GRAY32_FLOAT - Static variable in class ij.io.FileInfo
32-bit floating-point.
GRAY32_INT - Static variable in class ij.io.FileInfo
32-bit signed integer.
GRAY32_UNSIGNED - Static variable in class ij.io.FileInfo
32-bit unsigned integer.
GRAY64_FLOAT - Static variable in class ij.io.FileInfo
64-bit floating-point.
GRAY8 - Static variable in class ij.gui.NewImage
 
GRAY8 - Static variable in class ij.ImagePlus
8-bit grayscale (unsigned)
GRAY8 - Static variable in class ij.io.FileInfo
8-bit unsigned integer (0-255).
green - Variable in class ij.plugin.filter.RGBStackSplitter
These are the three stacks created by the split(ImageStack) method.
greens - Variable in class ij.io.FileInfo
 
grid() - Method in class skyview.data.Gridder
 
Gridder - Class in skyview.data
This class is used to lines and text to draw coordinate grid grid overlays.
Gridder(Image, String) - Constructor for class skyview.data.Gridder
Create a new Gridder object.
Gridder(Image, boolean) - Constructor for class skyview.data.Gridder
Create a new Gridder object.
grow(int, int) - Method in class ij.gui.FreehandRoi
 
grow(int, int) - Method in class ij.gui.Line
 
grow(int, int) - Method in class ij.gui.PolygonRoi
 
grow(int, int) - Method in class ij.gui.Roi
 
GT - Static variable in interface ij.macro.MacroConstants
 
GTE - Static variable in interface ij.macro.MacroConstants
 
GUI - Class in ij.gui
This class consists of static GUI utility methods.
GUI() - Constructor for class ij.gui.GUI
 

H

HAND - Static variable in class ij.gui.Toolbar
 
handCursor - Static variable in class ij.gui.ImageCanvas
 
HANDLE_SIZE - Static variable in class ij.gui.Roi
 
handleMouseDown(int, int) - Method in class ij.gui.Roi
 
handleMouseDrag(int, int, int) - Method in class ij.gui.Roi
 
handleMouseUp(int, int) - Method in class ij.gui.FreehandRoi
 
handleMouseUp(int, int) - Method in class ij.gui.PointRoi
 
handleMouseUp(int, int) - Method in class ij.gui.PolygonRoi
 
handleMouseUp(int, int) - Method in class ij.gui.Roi
 
handleMouseUp(int, int) - Method in class ij.gui.TextRoi
 
handlePopupMenu(MouseEvent) - Method in class ij.gui.ImageCanvas
 
has(String) - Static method in class skyview.executive.Settings
Check if the given key has been set
hashCode() - Method in class skyview.request.SourceCoordinates
Overiding hashCode and equals methods to find equal requests in an attempt to increase efficiency.
HashedList - Class in nom.tam.util
 
HashedList() - Constructor for class nom.tam.util.HashedList
 
hasPrev() - Method in interface nom.tam.util.Cursor
Is there a previous element in the collection?
hasVars() - Method in class ij.macro.Program
 
HDecompressor - Class in skyview.survey
HDecompressor.
HDecompressor() - Constructor for class skyview.survey.HDecompressor
Create a bare decompressor object.
HDecompressor(InputStream) - Constructor for class skyview.survey.HDecompressor
Create a decompressor associating it with a given input stream.
Header - Class in nom.tam.fits
This class describes methods to access and manipulate the header for a FITS HDU.
Header() - Constructor for class nom.tam.fits.Header
Create an empty header
Header(ArrayDataInput) - Constructor for class nom.tam.fits.Header
Create a header and populate it from the input stream
Header(String[]) - Constructor for class nom.tam.fits.Header
Create a header and initialize it with a vector of strings.
Header(Data) - Constructor for class nom.tam.fits.Header
Create a header which points to the given data object.
HeaderCard - Class in nom.tam.fits
This class describes methods to access and manipulate the individual cards for a FITS Header.
HeaderCard(String, double, String) - Constructor for class nom.tam.fits.HeaderCard
Create a HeaderCard from its component parts
HeaderCard(String, boolean, String) - Constructor for class nom.tam.fits.HeaderCard
Create a HeaderCard from its component parts
HeaderCard(String, int, String) - Constructor for class nom.tam.fits.HeaderCard
Create a HeaderCard from its component parts
HeaderCard(String, long, String) - Constructor for class nom.tam.fits.HeaderCard
Create a HeaderCard from its component parts
HeaderCard(String, String, String) - Constructor for class nom.tam.fits.HeaderCard
Create a HeaderCard from its component parts
HeaderCard(String, String, boolean) - Constructor for class nom.tam.fits.HeaderCard
Create a comment style card.
HeaderCard(String, String, String, boolean) - Constructor for class nom.tam.fits.HeaderCard
Create a HeaderCard from its component parts
HeaderCard(String) - Constructor for class nom.tam.fits.HeaderCard
Create a HeaderCard from a FITS card image
HeaderCardException - Exception in nom.tam.fits
 
HeaderCardException() - Constructor for exception nom.tam.fits.HeaderCardException
 
HeaderCardException(String) - Constructor for exception nom.tam.fits.HeaderCardException
 
HeaderOrder - Class in nom.tam.fits
This class implements a comparator which ensures that FITS keywords are written out in a proper order.
HeaderOrder() - Constructor for class nom.tam.fits.HeaderOrder
 
heasarcResolve() - Method in class skyview.request.SourceCoordinates
Set up and send query to resolve source name
height - Variable in class ij.ImagePlus
 
height - Variable in class ij.io.FileInfo
 
height - Variable in class ij.process.ImageProcessor
 
height - Variable in class ij.process.ImageStatistics
 
HelioeclipticCoordinateSystem - Class in skyview.geometry.csys
A helioecliptic coordinate system at a given epoch.
HelioeclipticCoordinateSystem(double) - Constructor for class skyview.geometry.csys.HelioeclipticCoordinateSystem
Get a coordinate system at a given epoch.
hexDigits - Static variable in class ij.util.Tools
This array contains the 16 hex digits '0'-'F'.
hide() - Method in class ij.ImagePlus
Closes the window, if any, that is displaying this image.
hideErrorMessages() - Method in class ij.plugin.TextReader
 
hideProcessStackDialog - Static variable in class ij.IJ
 
hideProgress() - Method in class ij.process.ImageProcessor
 
histMax - Variable in class ij.process.ImageStatistics
 
histMin - Variable in class ij.process.ImageStatistics
 
histogram - Variable in class ij.gui.HistogramWindow
 
Histogram - Class in ij.plugin
This plugin implements the Analyze/Histogram command.
Histogram() - Constructor for class ij.plugin.Histogram
 
histogram - Variable in class ij.process.ImageStatistics
 
histogram16 - Variable in class ij.process.ImageStatistics
65536 element histogram (16-bit images only)
histogramMax - Variable in class ij.process.ImageProcessor
 
histogramMin - Variable in class ij.process.ImageProcessor
 
histogramSize - Variable in class ij.process.ImageProcessor
 
HistogramWindow - Class in ij.gui
This class is an extended ImageWindow that displays histograms.
HistogramWindow(ImagePlus) - Constructor for class ij.gui.HistogramWindow
Displays a histogram using the title "Histogram of ImageName".
HistogramWindow(String, ImagePlus, int) - Constructor for class ij.gui.HistogramWindow
Displays a histogram using the specified title and number of bins.
HistogramWindow(String, ImagePlus, int, double, double) - Constructor for class ij.gui.HistogramWindow
Displays a histogram using the specified title, number of bins and histogram range.
HistogramWindow(String, ImagePlus, int, double, double, int) - Constructor for class ij.gui.HistogramWindow
Displays a histogram using the specified title, number of bins, histogram range and yMax.
HistogramWindow(String, ImagePlus, ImageStatistics) - Constructor for class ij.gui.HistogramWindow
Displays a histogram using the specified title and ImageStatistics.
HistScaler - Class in skyview.util
Scale an object linearly.
HistScaler() - Constructor for class skyview.util.HistScaler
Provide default scaler that positive values will scale the array logarithmically between 0-255.
HistScaler(double, double, int, int) - Constructor for class skyview.util.HistScaler
Provide a scaler with a specified scaling range to a specified range of bytes.
histYMax - Variable in class ij.process.ImageStatistics
 
Hotkeys - Class in ij.plugin
Implements the Plugins/Hotkeys/Install and Remove commands.
Hotkeys() - Constructor for class ij.plugin.Hotkeys
 
HTMLDialog - Class in ij.gui
This is modal dialog box that displays HTML formated text.
HTMLDialog(String, String) - Constructor for class ij.gui.HTMLDialog
 

I

ic - Variable in class ij.gui.ImageWindow
 
ic - Variable in class ij.gui.Roi
 
ICRS - Static variable in class skyview.geometry.CoordinateSystem
Standard ICRS coordinates
ICRSCoordinateSystem - Class in skyview.geometry.csys
A class defining the ICRS coordinate system.
ICRSCoordinateSystem() - Constructor for class skyview.geometry.csys.ICRSCoordinateSystem
 
IF - Static variable in interface ij.macro.MacroConstants
 
ij - package ij
 
ij - Variable in class ij.gui.ImageWindow
 
IJ - Class in ij
This class consists of static utility methods.
IJ() - Constructor for class ij.IJ
 
ij - Static variable in class ij.plugin.DragAndDrop
 
ij.gui - package ij.gui
 
ij.io - package ij.io
 
ij.macro - package ij.macro
 
ij.measure - package ij.measure
 
ij.plugin - package ij.plugin
 
ij.plugin.filter - package ij.plugin.filter
 
ij.plugin.frame - package ij.plugin.frame
 
ij.process - package ij.process
 
ij.text - package ij.text
 
ij.util - package ij.util
 
IJProcessor - Class in skyview.ij
This class uses ImageJ to create non-FITS image products.
IJProcessor() - Constructor for class skyview.ij.IJProcessor
 
Image - Class in skyview.survey
This class defines an image as the combination of a set of pixel values and a WCS describing the pixel coordinates.
Image() - Constructor for class skyview.survey.Image
Null constructor to be used in overriding classes
Image(double[], WCS, int, int) - Constructor for class skyview.survey.Image
Construct an image given the data and WCS with default depth
Image(double[], WCS, int, int, int) - Constructor for class skyview.survey.Image
Construct an image given the data and WCS with specified depth
IMAGE_DESCRIPTION - Static variable in class ij.io.TiffDecoder
 
IMAGE_LENGTH - Static variable in class ij.io.TiffDecoder
 
IMAGE_WIDTH - Static variable in class ij.io.TiffDecoder
 
ImageCalculator - Class in ij.plugin
This plugin implements the Process/Image Calculator command.
ImageCalculator() - Constructor for class ij.plugin.ImageCalculator
 
ImageCanvas - Class in ij.gui
This is a Canvas used to display images in a Window.
ImageCanvas(ImagePlus) - Constructor for class ij.gui.ImageCanvas
 
imageClosed(ImagePlus) - Method in interface ij.ImageListener
 
ImageConverter - Class in ij.process
This class converts an ImagePlus object to a different type.
ImageConverter(ImagePlus) - Constructor for class ij.process.ImageConverter
Constructs an ImageConverter based on an ImagePlus object.
ImageData - Class in nom.tam.fits
This class instantiates FITS primary HDU and IMAGE extension data.
ImageData(Header) - Constructor for class nom.tam.fits.ImageData
Create an array from a header description.
ImageData() - Constructor for class nom.tam.fits.ImageData
Create the equivalent of a null data element.
ImageData(Object) - Constructor for class nom.tam.fits.ImageData
Create an ImageData object using the specified object to initialize the data array.
ImageData.ArrayDesc - Class in nom.tam.fits
This class describes an array
ImageData.ImageDataTiler - Class in nom.tam.fits
This inner class allows the ImageTiler to see if the user has read in the data.
ImageFactory - Interface in skyview.survey
This interface is implemented by methods which can build an image using the given string.
ImageFinder - Class in skyview.geometry
 
ImageFinder() - Constructor for class skyview.geometry.ImageFinder
 
ImageGenerator - Interface in skyview.survey
This interface is implemented by classes that dyamically generate a list of images (or more precisely the spells through which the images may be created by an ImageFactory).
ImageHDU - Class in nom.tam.fits
FITS image header/data unit
ImageHDU(Header, Data) - Constructor for class nom.tam.fits.ImageHDU
Build an image HDU using the supplied data.
imageHeight - Variable in class ij.gui.ImageCanvas
 
ImageJ - Class in ij
This frame is the main ImageJ class.
ImageJ() - Constructor for class ij.ImageJ
Creates a new ImageJ frame.
ImageJ(Applet) - Constructor for class ij.ImageJ
Creates a new ImageJ frame running as an applet if the 'applet' argument is not null.
ImageJApplet - Class in ij
Runs ImageJ as an applet and optionally opens images using URLs that are passed as a parameters.
ImageJApplet() - Constructor for class ij.ImageJApplet
 
ImageLayout - Class in ij.gui
This is a custom layout manager that supports resizing of zoomed images.
ImageLayout(ImageCanvas) - Constructor for class ij.gui.ImageLayout
Creates a new ImageLayout with center alignment and 5 pixel horizontal and vertical gaps.
ImageListener - Interface in ij
 
ImageMath - Class in ij.plugin.filter
This plugin implements ImageJ's Process/Math submenu.
ImageMath() - Constructor for class ij.plugin.filter.ImageMath
 
ImageMedian - Class in skyview.geometry.deedger
This class adjusts the 0 points for data taken from multiple images to try to minimize edge effects.
ImageMedian() - Constructor for class skyview.geometry.deedger.ImageMedian
 
imageOpened(ImagePlus) - Method in interface ij.ImageListener
 
ImagePlus - Class in ij
This is an extended image class that supports 8-bit, 16-bit, 32-bit (real) and RGB images.
ImagePlus() - Constructor for class ij.ImagePlus
Constructs an uninitialized ImagePlus.
ImagePlus(String, Image) - Constructor for class ij.ImagePlus
Constructs an ImagePlus from an AWT Image.
ImagePlus(String, ImageProcessor) - Constructor for class ij.ImagePlus
Constructs an ImagePlus from an ImageProcessor.
ImagePlus(String) - Constructor for class ij.ImagePlus
Constructs an ImagePlus from a TIFF, BMP, DICOM, FITS, PGM, GIF or JPRG specified by a path or from a TIFF, DICOM, GIF or JPEG specified by a URL.
ImagePlus(String, ImageStack) - Constructor for class ij.ImagePlus
Constructs an ImagePlus from a stack.
ImageProcessor - Class in ij.process
This abstract class is the superclass for classes that process the four data types (byte, short, float and RGB) supported by ImageJ.
ImageProcessor() - Constructor for class ij.process.ImageProcessor
 
ImageProperties - Class in ij.plugin.filter
 
ImageProperties() - Constructor for class ij.plugin.filter.ImageProperties
 
Imager - Class in skyview.executive
This class generates an image or images from user inputs.
Imager() - Constructor for class skyview.executive.Imager
Initialize the imager.
ImageReader - Class in ij.io
Reads raw 8-bit, 16-bit or 32-bit (float or RGB) images from a stream or URL.
ImageReader(FileInfo) - Constructor for class ij.io.ImageReader
Constructs a new ImageReader using a FileInfo object to describe the file to be read.
ImageStack - Class in ij
This class represents an expandable array of images.
ImageStack(int, int) - Constructor for class ij.ImageStack
Creates a new, empty image stack.
ImageStack(int, int, ColorModel) - Constructor for class ij.ImageStack
Creates a new, empty image stack.
ImageStatistics - Class in ij.process
Statistics, including the histogram, of an image or image roi.
ImageStatistics() - Constructor for class ij.process.ImageStatistics
 
ImageTiler - Class in nom.tam.image
This class provides a subset of an N-dimensional image.
ImageTiler(RandomAccess, long, int[], Class) - Constructor for class nom.tam.image.ImageTiler
Create a tiler.
imageUpdate(Image, int, int, int, int, int) - Method in class ij.ImagePlus
Used by ImagePlus to monitor loading of images.
imageUpdated - Variable in class ij.gui.ImageCanvas
 
imageUpdated(ImagePlus) - Method in interface ij.ImageListener
 
imageUsed - Variable in class skyview.geometry.imagefinder.Border
Is a given image used in the transformation
imageWidth - Variable in class ij.gui.ImageCanvas
 
ImageWindow - Class in ij.gui
A frame for displaying images.
ImageWindow(ImagePlus) - Constructor for class ij.gui.ImageWindow
 
ImageWindow(ImagePlus, ImageCanvas) - Constructor for class ij.gui.ImageWindow
 
ImageWriter - Class in ij.io
Writes a raw image described by a FileInfo object to an OutputStream.
ImageWriter(FileInfo) - Constructor for class ij.io.ImageWriter
 
img - Variable in class ij.ImagePlus
 
img - Variable in class ij.process.ImageProcessor
 
img - Variable in class skyview.geometry.imagefinder.Border
The index giving the best image for each pixel
imp - Variable in class ij.gui.ImageCanvas
 
imp - Variable in class ij.gui.ImageWindow
 
imp - Variable in class ij.gui.ProfilePlot
 
imp - Variable in class ij.gui.Roi
 
imp - Variable in class ij.plugin.filter.ParticleAnalyzer
 
IMPORT_MENU - Static variable in class ij.Menus
 
ImportDialog - Class in ij.io
This is a dialog box used to imports raw 8, 16, 24 and 32-bit images.
ImportDialog(String, String) - Constructor for class ij.io.ImportDialog
 
ImportDialog() - Constructor for class ij.io.ImportDialog
 
in - Variable in class ij.io.TiffDecoder
 
INCLUDE_HOLES - Static variable in class ij.plugin.filter.ParticleAnalyzer
Flood fill to ignore interior holes.
incrementCounter() - Method in class ij.measure.ResultsTable
Increments the measurement counter by one.
incrementPosition(int[], int[], int[]) - Static method in class nom.tam.image.ImageTiler
Increment the offset within the position array.
inDepth - Variable in class skyview.geometry.Sampler
 
INDEX_OF - Static variable in interface ij.macro.MacroConstants
 
info - Variable in class ij.io.FileInfo
 
info - Variable in class ij.measure.Calibration
Plugin writers can use this string to store information about the image.
Info - Class in ij.plugin.filter
This plugin implements the Image/Show Info command.
Info() - Constructor for class ij.plugin.filter.Info
 
info() - Method in class nom.tam.fits.AsciiTableHDU
Print a little information about the data set.
info() - Method in class nom.tam.fits.BasicHDU
Print out some information about this HDU.
info() - Method in class nom.tam.fits.BinaryTableHDU
Print out some information about this HDU.
info() - Method in class nom.tam.fits.ImageHDU
Print out some information about this HDU.
info() - Method in class nom.tam.fits.RandomGroupsHDU
Display structural information about the current HDU.
info() - Method in class nom.tam.fits.UndefinedHDU
Print out some information about this HDU.
inHeight - Variable in class skyview.geometry.Sampler
 
inImage - Variable in class skyview.geometry.Sampler
The input image.
init() - Method in class ij.ImageJApplet
Starts ImageJ if it's not already running.
initialize(double[], WCS, int, int, int) - Method in class skyview.survey.Image
Initialize an image.
initializePointers() - Method in class nom.tam.util.ColumnTable
Set the pointer arrays for the eight primitive types to point to the appropriate elements of arrays.
input - Variable in class nom.tam.fits.Data
The inputstream used.
input - Variable in class skyview.geometry.imagefinder.Border
The input images.
insert(ImageProcessor, int, int) - Method in class ij.process.ImageProcessor
Inserts the image contained in 'ip' at (xloc, yloc).
insertComment(String) - Method in class nom.tam.fits.Header
Add a COMMENT line.
insertCommentStyle(String, String) - Method in class nom.tam.fits.Header
Add a line to the header using the COMMENT style, i.e., no '=' in column 9.
insertHDU(BasicHDU, int) - Method in class nom.tam.fits.Fits
Insert a FITS object into the list of HDUs.
insertHistory(String) - Method in class nom.tam.fits.Header
Add a HISTORY line.
install(String) - Method in class ij.plugin.MacroInstaller
 
install(String, Menu) - Method in class ij.plugin.MacroInstaller
 
Installer - Class in ij.plugin
Implements the Plugins/Shortcuts/Install...
Installer() - Constructor for class ij.plugin.Installer
 
installPlugin(String, char, String, String, ImageJ) - Static method in class ij.Menus
Adds a plugin based command to the end of a specified menu.
INT_INDEX - Static variable in interface nom.tam.util.PrimitiveInfo
 
INTEGRATED_DENSITY - Static variable in interface ij.measure.Measurements
 
INTEGRATED_DENSITY - Static variable in class ij.measure.ResultsTable
 
intelByteOrder - Variable in class ij.io.FileInfo
 
interchangeAxes() - Method in class skyview.geometry.Scaler
Interchange the X and Y axes
interpolate - Variable in class ij.process.ImageProcessor
 
interpolatedValue(double, double) - Method in class skyview.geometry.sampler.SplineSampler
 
interpolateScaledImages - Static variable in class ij.Prefs
Display images scaled <100% using bilinear interpolation
Interpreter - Class in ij.macro
This is the recursive descent parser/interpreter for the ImageJ macro language.
Interpreter() - Constructor for class ij.macro.Interpreter
 
INVALID_SHORTCUT - Static variable in class ij.Menus
 
invalidNumber() - Method in class ij.gui.GenericDialog
Returns true if one or more of the numeric fields contained an invalid number.
inverse() - Method in class skyview.geometry.Converter
Return the inverse of this series of transformations.
inverse() - Method in class skyview.geometry.distorter.DSSDistorter.DSSInvDistorter
Get the inverse Distorter
inverse() - Method in class skyview.geometry.distorter.DSSDistorter
The inverse Distorter (i.e., the undistorter) uses much of the same machinery, so we generate it as a inner class of the distorter.
inverse() - Method in class skyview.geometry.Distorter
 
inverse() - Method in class skyview.geometry.distorter.NeatDistorter
 
inverse() - Method in class skyview.geometry.distorter.NeatDistorter.NeatInvDistorter
 
inverse() - Method in class skyview.geometry.projecter.AitProjecter.AitDeprojecter
Get the inverse transformation
inverse() - Method in class skyview.geometry.projecter.AitProjecter
Get the associated deprojecter
inverse() - Method in class skyview.geometry.projecter.CarProjecter.CarDeprojecter
Get the inverse
inverse() - Method in class skyview.geometry.projecter.CarProjecter
Get the inverse transformation
inverse() - Method in class skyview.geometry.projecter.CscProjecter.CscDeprojecter
 
inverse() - Method in class skyview.geometry.projecter.CscProjecter
Get the inverse transformation
inverse() - Method in class skyview.geometry.Projecter
Get the inverse
inverse() - Method in class skyview.geometry.projecter.SinProjecter
Get the inverse transformation
inverse() - Method in class skyview.geometry.projecter.SinProjecter.SinDeprojecter
Get the inverse transformation
inverse() - Method in class skyview.geometry.projecter.TanProjecter
Get the inverse transformation
inverse() - Method in class skyview.geometry.projecter.TanProjecter.TanDeprojecter
Get the inverse transformation
inverse() - Method in class skyview.geometry.projecter.ZeaProjecter
Get this inverse of the transformation
inverse() - Method in class skyview.geometry.projecter.ZeaProjecter.ZeaDeprojecter
Get the inverse transformation
inverse() - Method in class skyview.geometry.Rotater
This isn't really right...
inverse() - Method in class skyview.geometry.Scaler
Return the inverse transformation.
inverse() - Method in class skyview.geometry.spheredistorter.BesselianDistorter.BesselianInverseDistorter
 
inverse() - Method in class skyview.geometry.spheredistorter.BesselianDistorter
Get the inverse distorter
inverse() - Method in class skyview.geometry.SphereDistorter
 
inverse() - Method in class skyview.geometry.Transformer
Get the inverse of the transformation.
inverseTransform() - Method in class ij.process.FHT
Performs an inverse transform, converting this image into the space domain.
inversionTested - Variable in class ij.process.ImageProcessor
 
INVERT - Static variable in interface ij.macro.MacroConstants
 
invert() - Method in class ij.process.FloatProcessor
 
invert() - Method in class ij.process.ImageProcessor
Inverts the image or ROI.
invert() - Method in class ij.process.ShortProcessor
 
invert() - Method in class ij.process.StackProcessor
 
invert() - Method in class skyview.geometry.distorter.DSSDistorter.DSSInvDistorter
Get the forward distorter back
INVERT_Y - Static variable in interface ij.measure.Measurements
 
invertedLut - Variable in class ij.process.ImageProcessor
 
invertLut() - Method in class ij.process.ColorProcessor
Does nothing since RGB images do not use LUTs.
invertLut() - Method in class ij.process.ImageProcessor
Inverts the values in this image's LUT (indexed color model).
inWidth - Variable in class skyview.geometry.Sampler
 
ip - Variable in class ij.ImagePlus
 
IPLAB - Static variable in class ij.io.TiffDecoder
 
IS_ACTIVE - Static variable in interface ij.macro.MacroConstants
 
IS_KEY_DOWN - Static variable in interface ij.macro.MacroConstants
 
IS_NAN - Static variable in interface ij.macro.MacroConstants
 
IS_OPEN - Static variable in interface ij.macro.MacroConstants
 
isArea() - Method in class ij.gui.Roi
Returns true if this is an area selection.
isBatchMode() - Static method in class ij.macro.Interpreter
 
isClosed() - Method in class ij.gui.ImageWindow
Has this window been closed?
isColorLut() - Method in class ij.process.ImageProcessor
Returns true if this image uses a color LUT.
isCompressed(String) - Static method in class nom.tam.fits.FitsUtil
Check if a file seems to be compressed.
isData(Object) - Static method in class nom.tam.fits.AsciiTableHDU
Check if this data is usable as an ASCII table.
isData(Object) - Static method in class nom.tam.fits.BinaryTableHDU
 
isData(Object) - Static method in class nom.tam.fits.ImageHDU
Check if this object can be described as a FITS image.
isData(Object) - Static method in class nom.tam.fits.RandomGroupsHDU
Check if this data is compatible with Random Groups structure.
isData(Object) - Static method in class nom.tam.fits.UndefinedHDU
Check if we can use the following object as in an Undefined FITS block.
isEmpty() - Method in class nom.tam.util.HashedList
Is the HashedList empty?
isGrayscale() - Method in class ij.LookUpTable
Returns true if this is a 256 entry grayscale LUT.
isHandle(int, int) - Method in class ij.gui.Line
Returns a handle number if the specified screen coordinates are inside or near a handle, otherwise returns -1.
isHandle(int, int) - Method in class ij.gui.OvalRoi
Returns a handle number if the specified screen coordinates are inside or near a handle, otherwise returns -1.
isHandle(int, int) - Method in class ij.gui.PolygonRoi
Returns a handle number if the specified screen coordinates are inside or near a handle, otherwise returns -1.
isHandle(int, int) - Method in class ij.gui.Roi
Returns a handle number if the specified screen coordinates are inside or near a handle, otherwise returns -1.
isHeader(Header) - Static method in class nom.tam.fits.AsciiTableHDU
Check that this is a valid ascii table header.
isHeader() - Method in class nom.tam.fits.AsciiTableHDU
Check that this HDU has a valid header.
isHeader(Header) - Static method in class nom.tam.fits.BasicHDU
Check that this is a valid header for the HDU.
isHeader(Header) - Static method in class nom.tam.fits.BinaryTableHDU
Check that this is a valid binary table header.
isHeader() - Method in class nom.tam.fits.BinaryTableHDU
Check that this HDU has a valid header.
isHeader(Header) - Static method in class nom.tam.fits.ImageHDU
Check that this HDU has a valid header for this type.
isHeader(Header) - Static method in class nom.tam.fits.RandomGroupsHDU
Is this a random groups header?
isHeader() - Method in class nom.tam.fits.RandomGroupsHDU
Check that this HDU has a valid header.
isHeader(Header) - Static method in class nom.tam.fits.UndefinedHDU
 
isHSB() - Method in class ij.ImageStack
Returns true if this is a 3-slice HSB stack.
isInverse(Transformer) - Method in class skyview.geometry.Converter
Is this the inverse of another transformation.
isInverse(Transformer) - Method in class skyview.geometry.distorter.DSSDistorter.DSSInvDistorter
Is this the inverse of another distorter?
isInverse(Transformer) - Method in class skyview.geometry.distorter.DSSDistorter
Is this the inverse of another distorter?
isInverse(Transformer) - Method in class skyview.geometry.distorter.NeatDistorter
 
isInverse(Transformer) - Method in class skyview.geometry.distorter.NeatDistorter.NeatInvDistorter
 
isInverse(Transformer) - Method in class skyview.geometry.projecter.AitProjecter.AitDeprojecter
Is this the inverse of another transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.AitProjecter
Is this the inverse of another transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.CarProjecter.CarDeprojecter
Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.CarProjecter
Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.CscProjecter.CscDeprojecter
Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.CscProjecter
Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.SinProjecter
Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.SinProjecter.SinDeprojecter
Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.TanProjecter
Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.TanProjecter.TanDeprojecter
Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.ZeaProjecter
Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.ZeaProjecter.ZeaDeprojecter
Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.Rotater
Is this the inverse rotation?
isInverse(Transformer) - Method in class skyview.geometry.Scaler
Is this an inverse of the current scaler?
isInverse(Transformer) - Method in class skyview.geometry.spheredistorter.BesselianDistorter.BesselianInverseDistorter
Is the the inverse of another transformation
isInverse(Transformer) - Method in class skyview.geometry.spheredistorter.BesselianDistorter
Is the the inverse of another transformation
isInverse(Transformer) - Method in class skyview.geometry.Transformer
Are these two transformations, inverses of each other? This method is used to optimize a series of transformations where transformations.
isInvertedLut() - Method in class ij.ImagePlus
Returns true is this image uses an inverting LUT that displays zero as white and 255 as black.
isInvertedLut() - Method in class ij.process.ColorProcessor
Always returns false since RGB images do not use LUTs.
isInvertedLut() - Method in class ij.process.ImageProcessor
Returns true if this image uses an inverting LUT that displays zero as white and 255 as black.
isJava14() - Static method in class ij.IJ
Returns true if ImageJ is running on a Java 1.4 or greater JVM.
isJava2() - Static method in class ij.IJ
Returns true if ImageJ is running on Java 2.
isKeyValuePair() - Method in class nom.tam.fits.HeaderCard
Is this a key/value card?
isKillable() - Method in class ij.process.ImageProcessor
Obsolete.
isLine() - Method in class ij.gui.Roi
Returns true if this is a line selection.
isMacintosh() - Static method in class ij.IJ
Returns true if this machine is a Macintosh.
isMacOSX() - Static method in class ij.IJ
Returns true if this machine is a Macintosh running OS X.
isNull(int, int) - Method in class nom.tam.fits.AsciiTable
See if an element is null.
isNull(int, int) - Method in class nom.tam.fits.AsciiTableHDU
See if an element is null
isNumeric - Static variable in interface nom.tam.util.PrimitiveInfo
Is this a numeric class
isPrimary - Variable in class nom.tam.fits.BasicHDU
Is this the first HDU in a FITS file?
isProcessor() - Method in class ij.ImagePlus
 
isPseudoColorLut() - Method in class ij.process.ImageProcessor
Returns true if this image uses a pseudocolor or grayscale LUT, in other words, is this an image that can be filtered.
isRedirectImage() - Static method in class ij.plugin.filter.Analyzer
Returns true if an image is selected in the "Redirect To:" popup menu of the Analyze/Set Measurements dialog box.
isResultsWindow() - Static method in class ij.IJ
Returns true if the "Results" window is open.
isRGB() - Method in class ij.ImageStack
Returns true if this is a 3-slice RGB stack.
isRotation() - Method in class skyview.geometry.csys.BesselianCoordinateSystem
This coordinate system is not just a rotation away from the reference frame.
isSigned16Bit() - Method in class ij.measure.Calibration
Returns true if this is a signed 16-bit image.
isStringValue() - Method in class nom.tam.fits.HeaderCard
Does this card contain a string value?
isTiled() - Method in class skyview.survey.DSSImage
Is this image tiled
isTiled() - Method in class skyview.survey.Image
Is this image tiled? I.e., do we read in only a piece of the image at a time?
isVirtual() - Method in class ij.ImageStack
Returns true if this is a virtual (disk resident) stack.
isVisible() - Method in class ij.gui.Roi
Returns true if this ROI is currently displayed on an image.
isWindows() - Static method in class ij.IJ
Returns true if this machine is running Windows.
itemStateChanged(ItemEvent) - Method in class ij.gui.GenericDialog
 
itemStateChanged(ItemEvent) - Method in class ij.ImageJ
Handles CheckboxMenuItem state changes.
itemStateChanged(ItemEvent) - Method in class ij.plugin.Colors
 
itemStateChanged(ItemEvent) - Method in class ij.plugin.filter.Resizer
 
itemStateChanged(ItemEvent) - Method in class ij.plugin.filter.SpecifyROI
 
itemStateChanged(ItemEvent) - Method in class ij.plugin.frame.ContrastAdjuster
 
itemStateChanged(ItemEvent) - Method in class ij.plugin.frame.Fitter
 
itemStateChanged(ItemEvent) - Method in class ij.plugin.frame.Fonts
 
itemStateChanged(ItemEvent) - Method in class ij.plugin.frame.PasteController
 
itemStateChanged(ItemEvent) - Method in class ij.plugin.frame.RoiManager
 
itemStateChanged(ItemEvent) - Method in class ij.plugin.frame.ThresholdAdjuster
 
iterator() - Method in class nom.tam.fits.Header
Get an iterator over the header cards
iterator() - Method in class nom.tam.util.HashedList
Return an iterator over the entire list.
iterator(Object) - Method in class nom.tam.util.HashedList
Return an iterator over the list starting with the entry with a given key.
iterator(int) - Method in class nom.tam.util.HashedList
Return an iterator starting with the n'th entry.
IterFactor - Static variable in class ij.measure.CurveFitter
 

J

J2000 - Static variable in class skyview.geometry.CoordinateSystem
Standard J2000 coordinates -- the reference frame
jarFiles - Variable in class ij.io.PluginClassLoader
 
Java2 - Class in ij.util
This class contains static methods that use the Java 2 API.
Java2() - Constructor for class ij.util.Java2
 
JAVA_OR_TEXT - Static variable in class ij.io.Opener
 
JavaProperties - Class in ij.plugin
Displays the Java system properties in a text window.
JavaProperties() - Constructor for class ij.plugin.JavaProperties
 
JPEG - Static variable in class ij.io.Opener
 
JPEG - Static variable in class ij.Prefs
 
JpegWriter - Class in ij.plugin
The File->Save As->Jpeg command (FileSaver.saveAsJpeg()) uses this plugin to save images in JPEG format when running Java 2.
JpegWriter() - Constructor for class ij.plugin.JpegWriter
 
JulianCoordinateSystem - Class in skyview.geometry.csys
The class defining Julian coordinate systems.
JulianCoordinateSystem(double) - Constructor for class skyview.geometry.csys.JulianCoordinateSystem
Get a Julian CoordinateSystem of a given epoch.
justification - Variable in class ij.process.ImageProcessor
 

K

KEY_PREFIX - Static variable in class ij.Prefs
 
keyPressed(KeyEvent) - Method in class ij.gui.GenericDialog
 
keyPressed(KeyEvent) - Method in class ij.ImageJ
 
keyPressed(KeyEvent) - Method in class ij.text.TextPanel
 
keyReleased(KeyEvent) - Method in class ij.gui.GenericDialog
 
keyReleased(KeyEvent) - Method in class ij.ImageJ
 
keyReleased(KeyEvent) - Method in class ij.text.TextPanel
 
keyTyped(KeyEvent) - Method in class ij.gui.GenericDialog
 
keyTyped(KeyEvent) - Method in class ij.ImageJ
 
keyTyped(KeyEvent) - Method in class ij.text.TextPanel
 
keywordIDs - Static variable in interface ij.macro.MacroConstants
 
keywords - Static variable in interface ij.macro.MacroConstants
 
killProcessor() - Method in class ij.ImagePlus
Obsolete.
killRoi() - Method in class ij.ImagePlus
Deletes the current region of interest.
killStack() - Method in class ij.ImagePlus
 
KURTOSIS - Static variable in interface ij.measure.Measurements
 
KURTOSIS - Static variable in class ij.measure.ResultsTable
 
kurtosis - Variable in class ij.process.ImageStatistics
 

L

label - Variable in class ij.gui.MessageDialog
 
label(ImageProcessor) - Method in class ij.plugin.filter.Filler
 
LABELS - Static variable in interface ij.measure.Measurements
 
LanczosSampler - Class in skyview.geometry.sampler
This class implements a nearest neighbor sampling scheme.
LanczosSampler() - Constructor for class skyview.geometry.sampler.LanczosSampler
Create a three lobe lanczos sampler as a default width.
LAST_INDEX_OF - Static variable in interface ij.macro.MacroConstants
 
LAST_NUMERIC - Static variable in interface nom.tam.util.PrimitiveInfo
Index of last element of above arrays referring to a numeric type
lat - Variable in class skyview.executive.Imager
The lon/lat (or RA/dec) coordinates of the output image.
layoutContainer(Container) - Method in class ij.gui.ImageLayout
Lays out the container amd calls ImageCanvas.resizeCanvas() to adjust the image canvas size as needed.
LEFT_JUSTIFY - Static variable in class ij.process.ImageProcessor
Left justify text.
length() - Method in class nom.tam.util.BufferedFile
Get the current length of the file.
LENGTH_OF - Static variable in interface ij.macro.MacroConstants
 
LIMIT - Static variable in interface ij.measure.Measurements
 
Line - Class in ij.gui
This class represents a straight line selection.
Line(int, int, int, int) - Constructor for class ij.gui.Line
Creates a new straight line selection using the specified starting and ending screen coordinates.
Line(int, int, ImagePlus) - Constructor for class ij.gui.Line
Starts the process of creating a new user-generated straight line selection.
Line(int, int, int, int, ImagePlus) - Constructor for class ij.gui.Line
Obsolete
LINE - Static variable in class ij.gui.Plot
Connect points with solid lines.
LINE - Static variable in class ij.gui.PlotWindow
Connect points with solid lines.
LINE - Static variable in class ij.gui.Roi
 
LINE - Static variable in class ij.gui.Toolbar
 
LINE_TO - Static variable in interface ij.macro.MacroConstants
 
LinearScaler - Class in skyview.util
Scale an object linearly.
LinearScaler() - Constructor for class skyview.util.LinearScaler
 
LinearScaler(double, double, int, int) - Constructor for class skyview.util.LinearScaler
Provide a scaler with a specified scaling range to a specified range of bytes.
LineGraphAnalyzer - Class in ij.plugin.filter
Implements ImageJ's Analyze/Analyze Line Graph command.
LineGraphAnalyzer() - Constructor for class ij.plugin.filter.LineGraphAnalyzer
 
lineTo(int, int) - Method in class ij.process.ImageProcessor
Draws a line from the current drawing location to (x,y).
lineWidth - Variable in class ij.process.ImageProcessor
 
LineWidthAdjuster - Class in ij.plugin.frame
Adjusts the width of line selections.
LineWidthAdjuster() - Constructor for class ij.plugin.frame.LineWidthAdjuster
 
LISampler - Class in skyview.geometry.sampler
This class implements a linear interpolation sampling scheme.
LISampler() - Constructor for class skyview.geometry.sampler.LISampler
 
list - Variable in class ij.gui.HistogramWindow
 
listAllThreads(PrintWriter) - Static method in class ij.plugin.ThreadLister
 
listCommands() - Method in class ij.plugin.CommandLister
 
listShortcuts() - Method in class ij.plugin.CommandLister
 
listValues - Static variable in class ij.gui.PlotWindow
Display the XY coordinates in a separate window.
load(Object, Applet) - Static method in class ij.Prefs
Finds and loads the ImageJ configuration file, "IJ_Props.txt".
load(BufferedReader) - Method in class ij.text.TextWindow
Appends the text in the specified file to the end of this TextWindow.
loadClass(String) - Method in class ij.io.PluginClassLoader
Returns a Class from the path or JAR files.
loadClass(String, boolean) - Method in class ij.io.PluginClassLoader
Returns a Class from the path or JAR files.
loadClassBytes(String) - Method in class ij.io.PluginClassLoader
This does the actual work of loading the bytes from the disk.
lock() - Method in class ij.ImagePlus
Locks the image so other threads can test to see if it is in use.
locked - Variable in class ij.ImagePlus
 
lockSilently() - Method in class ij.ImagePlus
Similar to lock, but doesn't beep and display an error message if the attempt to lock the image fails.
log - Variable in class ij.gui.HistogramWindow
 
log(String) - Static method in class ij.IJ
Displays a line of text in the "Log" window.
LOG - Static variable in interface ij.macro.MacroConstants
 
LOG - Static variable in class ij.measure.Calibration
 
LOG - Static variable in class ij.measure.CurveFitter
 
log() - Method in class ij.process.FloatProcessor
 
log() - Method in class ij.process.ImageProcessor
Performs a log transform on the image or ROI.
log() - Method in class ij.process.ShortProcessor
 
LOG2 - Static variable in class ij.measure.Calibration
 
LOG2 - Static variable in class ij.measure.CurveFitter
 
LOGICAL_AND - Static variable in interface ij.macro.MacroConstants
 
LOGICAL_OR - Static variable in interface ij.macro.MacroConstants
 
logScale - Variable in class ij.gui.HistogramWindow
 
LogScaler - Class in skyview.util
Scale an object linearly.
LogScaler() - Constructor for class skyview.util.LogScaler
Provide default scaler that positive values will scale the array logarithmically between 0-255.
LogScaler(double, double, int, int, boolean) - Constructor for class skyview.util.LogScaler
Provide a scaler with a specified scaling range to a specified range of bytes.
lon - Variable in class skyview.executive.Imager
The lon/lat (or RA/dec) coordinates of the output image.
LONG_INDEX - Static variable in interface nom.tam.util.PrimitiveInfo
 
longOffset - Variable in class ij.io.FileInfo
 
LookUpTable - Class in ij
This class represents a color look-up table.
LookUpTable(Image) - Constructor for class ij.LookUpTable
Constructs a LookUpTable object from an AWT Image.
LookUpTable(ColorModel) - Constructor for class ij.LookUpTable
Constructs a LookUpTable object from a ColorModel.
lostOwnership(Clipboard, Transferable) - Method in class ij.gui.HistogramWindow
 
lostOwnership(Clipboard, Transferable) - Method in class ij.gui.PlotWindow
 
lostOwnership(Clipboard, Transferable) - Method in class ij.plugin.frame.Editor
 
lostOwnership(Clipboard, Transferable) - Method in class ij.text.TextPanel
 
LT - Static variable in interface ij.macro.MacroConstants
 
LTE - Static variable in interface ij.macro.MacroConstants
 
lut - Variable in class ij.gui.HistogramWindow
 
LUT - Static variable in class ij.io.Opener
 
LUT_Editor - Class in ij.plugin
 
LUT_Editor() - Constructor for class ij.plugin.LUT_Editor
 
lutAnimation - Variable in class ij.process.ImageProcessor
 
LutApplier - Class in ij.plugin.filter
This plugin implements the Image/Lookup Tables/Apply LUT command.
LutApplier() - Constructor for class ij.plugin.filter.LutApplier
 
LutLoader - Class in ij.plugin
Opens NIH Image look-up tables (LUTs), 768 byte binary LUTs (256 reds, 256 greens and 256 blues), LUTs in text format, or generates the LUT specified by the string argument passed to the run() method.
LutLoader() - Constructor for class ij.plugin.LutLoader
 
lutMessage - Static variable in class ij.plugin.ZProjector
 
lutSize - Variable in class ij.io.FileInfo
 
lutUpdateMode - Variable in class ij.process.ImageProcessor
 
LutViewer - Class in ij.plugin.filter
Displays the active image's look-up table.
LutViewer() - Constructor for class ij.plugin.filter.LutViewer
 
LZW - Static variable in class ij.io.FileInfo
 
LZW_WITH_DIFFERENCING - Static variable in class ij.io.FileInfo
 
lzwUncompress(byte[]) - Method in class ij.io.ImageReader
Utility method for decoding an LZW-compressed image strip.

M

Macro - Class in ij
The class contains static methods that perform macro operations.
Macro() - Constructor for class ij.Macro
 
MACRO - Static variable in interface ij.macro.MacroConstants
 
MACRO - Static variable in class ij.plugin.NewPlugin
 
MACRO_CANCELED - Static variable in class ij.Macro
 
Macro_Runner - Class in ij.plugin
Opens and runs a macro file.
Macro_Runner() - Constructor for class ij.plugin.Macro_Runner
 
MacroConstants - Interface in ij.macro
 
MacroInstaller - Class in ij.plugin
This plugin implements the Plugins/Macros/Install Macros command.
MacroInstaller() - Constructor for class ij.plugin.MacroInstaller
 
MacroRunner - Class in ij.macro
This class runs macros in a separate thread.
MacroRunner(String) - Constructor for class ij.macro.MacroRunner
Create a new object that interprets macro source in a separate thread.
MacroRunner(File) - Constructor for class ij.macro.MacroRunner
Create a new object that interprets macro source in a separate thread.
MacroRunner(Program, int, String) - Constructor for class ij.macro.MacroRunner
Create a new object that runs a tokenized macro in a separate thread.
macroRunning() - Static method in class ij.IJ
Returns true if either of the IJ.run() methods is executing.
mag - Variable in class ij.gui.Roi
 
magnification - Variable in class ij.gui.ProfilePlot
 
MAGNIFIER - Static variable in class ij.gui.Toolbar
 
main(String[]) - Static method in class ij.ImageJ
 
main(String[]) - Static method in class nom.tam.fits.FitsDate
 
main(String[]) - Static method in class skyview.data.AngScale
 
main(String[]) - Static method in class skyview.data.CoordinateFormatter
 
main(String[]) - Static method in class skyview.executive.Imager
Generate an image given the input parameters.
main(String[]) - Static method in class skyview.geometry.Position
Test the Position class
main(String[]) - Static method in class skyview.request.SourceCoordinates
Test functionality.
main(String[]) - Static method in class skyview.vo.ConeQuerier
 
MAJOR - Static variable in class ij.measure.ResultsTable
 
major - Variable in class ij.process.EllipseFitter
Length of major axis
major - Variable in class ij.process.ImageStatistics
Length of major axis of fitted ellipse
MAKE_LINE - Static variable in interface ij.macro.MacroConstants
 
MAKE_OVAL - Static variable in interface ij.macro.MacroConstants
 
MAKE_POLYGON - Static variable in interface ij.macro.MacroConstants
 
MAKE_RECTANGLE - Static variable in interface ij.macro.MacroConstants
 
MAKE_SELECTION - Static variable in interface ij.macro.MacroConstants
 
makeData() - Method in class nom.tam.fits.Header
Create the data element corresponding to the current header
makeDefaultColorModel() - Method in class ij.process.ImageProcessor
 
makeEDM(ImageProcessor) - Method in class ij.plugin.filter.EDM
Converts a binary image into a grayscale Euclidean Distance Map (EDM).
makeHDU(Header) - Static method in class nom.tam.fits.Fits
Create an HDU from the given header.
makeHDU(Object) - Static method in class nom.tam.fits.Fits
Create an HDU from the given data kernel.
makeHDU(Data) - Static method in class nom.tam.fits.Fits
Create an HDU from the given Data.
makeKernel(double) - Method in class ij.plugin.filter.GaussianBlur
 
makeLine(int, int, int, int) - Static method in class ij.IJ
Creates a straight line selection.
makeMask(ImageProcessor, Rectangle) - Method in class ij.plugin.filter.Filler
 
makeMontage(ImagePlus) - Method in class ij.plugin.MontageMaker
 
makeMontage(ImagePlus, int, int, double, int, int, int, int, boolean) - Method in class ij.plugin.MontageMaker
 
makeOval(int, int, int, int) - Static method in class ij.IJ
Creates an elliptical selection.
makeRectangle(int, int, int, int) - Static method in class ij.IJ
Creates a rectangular selection.
makeRoi(ImageProcessor) - Method in class ij.process.EllipseFitter
Generates the xCoordinates, yCoordinates public arrays that can be used to create an ROI.
makeSurfacePlot(ImageProcessor) - Method in class ij.plugin.SurfacePlotter
 
manufactureData(Header) - Static method in class nom.tam.fits.AsciiTableHDU
Create a Data object to correspond to the header description.
manufactureData() - Method in class nom.tam.fits.AsciiTableHDU
Create an empty data structure corresponding to the input header.
manufactureData(Header) - Static method in class nom.tam.fits.BinaryTableHDU
Create data from a binary table header.
manufactureData() - Method in class nom.tam.fits.BinaryTableHDU
 
manufactureData() - Method in class nom.tam.fits.ImageHDU
Create a Data object to correspond to the header description.
manufactureData(Header) - Static method in class nom.tam.fits.ImageHDU
 
manufactureData() - Method in class nom.tam.fits.RandomGroupsHDU
Create a FITS Data object corresponding to this HDU header.
manufactureData(Header) - Static method in class nom.tam.fits.RandomGroupsHDU
Create FITS data object corresponding to a given header.
manufactureData() - Method in class nom.tam.fits.UndefinedHDU
Create a Data object to correspond to the header description.
manufactureData(Header) - Static method in class nom.tam.fits.UndefinedHDU
 
manufactureHeader(Data) - Static method in class nom.tam.fits.AsciiTableHDU
Create a header to match the input data.
manufactureHeader(Data) - Static method in class nom.tam.fits.BinaryTableHDU
Build a binary table HDU from the supplied data.
manufactureHeader(Data) - Static method in class nom.tam.fits.ImageHDU
Create a header that describes the given image data.
manufactureHeader(Data) - Static method in class nom.tam.fits.UndefinedHDU
Create a header that describes the given image data.
markWidth - Static variable in class ij.plugin.filter.Analyzer
 
MASKS - Static variable in class ij.plugin.filter.ParticleAnalyzer
 
maskSizeError(ImageProcessor) - Method in class ij.process.ImageProcessor
 
MAX - Static variable in class ij.measure.ResultsTable
 
MAX - Static variable in class ij.plugin.filter.RankFilters
 
MAX - Static variable in interface ij.process.Blitter
dst=max(dst,src)
max(double) - Method in class ij.process.FloatProcessor
 
max(double) - Method in class ij.process.ImageProcessor
Pixels greater than 'value' are set to 'value'.
max - Variable in class ij.process.ImageStatistics
 
max(double) - Method in class ij.process.ShortProcessor
 
MAX_COLUMNS - Static variable in class ij.measure.ResultsTable
 
MAX_KEYWORD_LENGTH - Static variable in class nom.tam.fits.HeaderCard
Maximum length of a FITS keyword field
MAX_MACROS - Static variable in class ij.plugin.frame.Editor
 
MAX_MACROS - Static variable in class ij.plugin.MacroInstaller
 
MAX_METHOD - Static variable in class ij.plugin.ZProjector
 
MAX_OF - Static variable in interface ij.macro.MacroConstants
 
MAX_OPEN_RECENT_ITEMS - Static variable in class ij.Menus
 
MAX_SIZE - Static variable in class ij.plugin.frame.Editor
 
MAX_SIZE - Static variable in class ij.plugin.MacroInstaller
 
MAX_STANDARDS - Static variable in interface ij.measure.Measurements
Maximum number of calibration standard (20)
MAX_VALUE_LENGTH - Static variable in class nom.tam.fits.HeaderCard
Maximum length of a FITS value field
maxCount - Variable in class ij.process.ImageStatistics
 
MaxExposure - Class in skyview.geometry.imagefinder
This class selects the best image for a pixel by looking for the image with the longest exposure that has the pixel in the field of view.
MaxExposure() - Constructor for class skyview.geometry.imagefinder.MaxExposure
 
maxInArray(int[]) - Static method in class skyview.util.Utilities
Find the maximum value in an integer array
maxInArray(double[]) - Static method in class skyview.util.Utilities
Find the maximum value of a double array.
maxLength(String[]) - Static method in class nom.tam.fits.FitsUtil
Get the maximum length of a String in a String array.
maxMemory() - Static method in class ij.IJ
Returns the maximum amount of memory available to ImageJ or zero if ImageJ is unable to determine this limit.
maxMemory() - Method in class ij.plugin.Memory
With Java 1.4.1 or later, returns the maximum amount of memory that this JVM will attempt to use, otherwise, returns zero.
maxPoints - Variable in class ij.gui.PolygonRoi
 
maxThreshold - Variable in class ij.process.ImageProcessor
 
MEAN - Static variable in interface ij.measure.Measurements
 
MEAN - Static variable in class ij.measure.ResultsTable
 
MEAN - Static variable in class ij.plugin.filter.RankFilters
 
mean - Variable in class ij.process.ImageStatistics
 
measure() - Method in class ij.gui.MultiLineLabel
 
Measurements - Interface in ij.measure
 
MeasurementsWriter - Class in ij.plugin
Writes measurements to a tab-delimited text file.
MeasurementsWriter() - Constructor for class ij.plugin.MeasurementsWriter
 
MEDIAN - Static variable in interface ij.measure.Measurements
 
MEDIAN - Static variable in class ij.measure.ResultsTable
 
MEDIAN - Static variable in class ij.plugin.filter.RankFilters
 
median - Variable in class ij.process.ImageStatistics
 
MEDIAN_METHOD - Static variable in class ij.plugin.ZProjector
 
MedianCut - Class in ij.process
Converts an RGB image to 8-bit index color using Heckbert's median-cut color quantization algorithm.
MedianCut(int[], int, int) - Constructor for class ij.process.MedianCut
 
MedianCut(ColorProcessor) - Constructor for class ij.process.MedianCut
 
medianFilter() - Method in class ij.process.ByteProcessor
 
medianFilter() - Method in class ij.process.ColorProcessor
 
medianFilter() - Method in class ij.process.FloatProcessor
Not implemented.
medianFilter() - Method in class ij.process.ImageProcessor
A 3x3 median filter.
medianFilter() - Method in class ij.process.ShortProcessor
Not implemented.
Memory - Class in ij.plugin
This plugin implements the Edit/Options/Memory command.
Memory() - Constructor for class ij.plugin.Memory
 
MemoryMonitor - Class in ij.plugin
This plugin continuously plots ImageJ's memory utilization.
MemoryMonitor() - Constructor for class ij.plugin.MemoryMonitor
 
MemoryTest - Class in ij.plugin
ImageJ plugin that tries to find out how much memory is available for opening images.
MemoryTest() - Constructor for class ij.plugin.MemoryTest
 
Menus - Class in ij
This class installs and updates ImageJ's menus.
mergeStacks() - Method in class ij.plugin.RGBStackMerge
Combines three grayscale stacks into one RGB stack.
mergeStacks(int, int, int, ImageStack, ImageStack, ImageStack, boolean) - Method in class ij.plugin.RGBStackMerge
 
MessageDialog - Class in ij.gui
A modal dialog box that displays information.
MessageDialog(Frame, String, String) - Constructor for class ij.gui.MessageDialog
 
META_DATA - Static variable in class ij.io.TiffDecoder
 
META_DATA_BYTE_COUNTS - Static variable in class ij.io.TiffDecoder
 
metaData - Variable in class ij.io.FileInfo
 
metaDataTypes - Variable in class ij.io.FileInfo
 
METAMORPH1 - Static variable in class ij.io.TiffDecoder
 
METAMORPH2 - Static variable in class ij.io.TiffDecoder
 
METHODS - Static variable in class ij.plugin.ZProjector
 
micronSymbol - Static variable in class ij.IJ
 
mimicArray(Object, Class) - Static method in class nom.tam.util.ArrayFuncs
Create an array of a type given by new type with the dimensionality given in array.
MIN - Static variable in class ij.measure.ResultsTable
 
MIN - Static variable in class ij.plugin.filter.RankFilters
 
MIN - Static variable in interface ij.process.Blitter
dst=min(dst,src)
min(double) - Method in class ij.process.FloatProcessor
 
min(double) - Method in class ij.process.ImageProcessor
Pixels less than 'value' are set to 'value'.
min - Variable in class ij.process.ImageStatistics
 
min(double) - Method in class ij.process.ShortProcessor
 
MIN_MAX - Static variable in interface ij.measure.Measurements
 
MIN_METHOD - Static variable in class ij.plugin.ZProjector
 
MIN_OF - Static variable in interface ij.macro.MacroConstants
 
minDist(double, double, double, double) - Method in class skyview.geometry.imagefinder.Border
Given a point at x,y in an image of size a,b in the rectangle 0,a 0,b find the minimum distance to the edge.
minDist(double, double, double, double) - Method in class skyview.geometry.imagefinder.ScaledBorder
Given a point at x,y in an image of size a,b in the rectangle 0,a 0,b find the minimum distance to the edge.
minimumLayoutSize(Container) - Method in class ij.gui.ImageLayout
Returns the minimum dimensions for this layout.
minInArray(double[]) - Static method in class skyview.util.Utilities
Find the minimum value of an array.
minMaxInArray(double[]) - Static method in class skyview.util.Utilities
The the extremum values in an array
MINOR - Static variable in class ij.measure.ResultsTable
 
minor - Variable in class ij.process.EllipseFitter
Length of minor axis
minor - Variable in class ij.process.ImageStatistics
Length of minor axis of fitted ellipse
minThreshold - Variable in class ij.process.ImageProcessor
 
MINUS_EQUAL - Static variable in interface ij.macro.MacroConstants
 
MINUS_MINUS - Static variable in interface ij.macro.MacroConstants
 
MODE - Static variable in interface ij.measure.Measurements
 
MODE - Static variable in class ij.measure.ResultsTable
 
mode - Variable in class ij.process.ImageStatistics
 
modifiers(int) - Static method in class ij.ImageJ
Return the current list of modifier keys.
MontageMaker - Class in ij.plugin
Implements the Image/Stacks/Make Montage command.
MontageMaker() - Constructor for class ij.plugin.MontageMaker
 
mos - Variable in class skyview.executive.Imager
The Mosaicker used in generating the ouput image.
Mosaicker - Class in skyview.geometry
A mosaicker is an object which creates a new image from a set of input images.
Mosaicker() - Constructor for class skyview.geometry.Mosaicker
 
mouseClicked(MouseEvent) - Method in class ij.gui.ImageCanvas
 
mouseClicked(MouseEvent) - Method in class ij.gui.Toolbar
 
mouseClicked(MouseEvent) - Method in class ij.ImageJ
 
mouseClicked(MouseEvent) - Method in class ij.text.TextPanel
 
mouseDownInHandle(int, int, int) - Method in class ij.gui.Line
 
mouseDownInHandle(int, int, int) - Method in class ij.gui.PolygonRoi
 
mouseDownInHandle(int, int, int) - Method in class ij.gui.Roi
 
mouseDragged(MouseEvent) - Method in class ij.gui.ImageCanvas
 
mouseDragged(MouseEvent) - Method in class ij.gui.Toolbar
 
mouseDragged(MouseEvent) - Method in class ij.text.TextPanel
 
mouseEntered(MouseEvent) - Method in class ij.gui.ImageCanvas
 
mouseEntered(MouseEvent) - Method in class ij.gui.Toolbar
 
mouseEntered(MouseEvent) - Method in class ij.ImageJ
 
mouseEntered(MouseEvent) - Method in class ij.text.TextPanel
 
mouseExited(MouseEvent) - Method in class ij.gui.ImageCanvas
 
mouseExited(MouseEvent) - Method in class ij.gui.Toolbar
 
mouseExited(MouseEvent) - Method in class ij.ImageJ
 
mouseExited(MouseEvent) - Method in class ij.text.TextPanel
 
mouseMoved(int, int) - Method in class ij.gui.HistogramWindow
 
mouseMoved(MouseEvent) - Method in class ij.gui.ImageCanvas
 
mouseMoved(int, int) - Method in class ij.gui.ImageWindow
This method is called by ImageCanvas.mouseMoved(MouseEvent).
mouseMoved(int, int) - Method in class ij.gui.PlotWindow
Updates the graph X and Y values when the mouse is moved.
mouseMoved(MouseEvent) - Method in class ij.gui.Toolbar
 
mouseMoved(int, int) - Method in class ij.ImagePlus
Displays the cursor coordinates and pixel value in the status bar.
mouseMoved(MouseEvent) - Method in class ij.text.TextPanel
 
mousePressed(MouseEvent) - Method in class ij.gui.ImageCanvas
 
mousePressed(MouseEvent) - Method in class ij.gui.Toolbar
 
mousePressed(MouseEvent) - Method in class ij.ImageJ
 
mousePressed(MouseEvent) - Method in class ij.text.TextPanel
 
mouseReleased(MouseEvent) - Method in class ij.gui.ImageCanvas
 
mouseReleased(MouseEvent) - Method in class ij.gui.Toolbar
 
mouseReleased(MouseEvent) - Method in class ij.ImageJ
 
mouseReleased(MouseEvent) - Method in class ij.text.TextPanel
 
MOVE_TO - Static variable in interface ij.macro.MacroConstants
 
moveCursor - Static variable in class ij.gui.ImageCanvas
 
moveHandle(int, int) - Method in class ij.gui.Line
 
moveHandle(int, int) - Method in class ij.gui.OvalRoi
 
moveHandle(int, int) - Method in class ij.gui.PolygonRoi
 
moveHandle(int, int) - Method in class ij.gui.Roi
 
moveTo(int, int) - Method in class ij.process.ImageProcessor
Sets the current drawing location.
MOVING - Static variable in class ij.gui.Roi
 
MOVING_HANDLE - Static variable in class ij.gui.Roi
 
MUL_EQUAL - Static variable in interface ij.macro.MacroConstants
 
MultiLineLabel - Class in ij.gui
Custom component for displaying multiple lines.
MultiLineLabel(String) - Constructor for class ij.gui.MultiLineLabel
 
MULTIPLY - Static variable in interface ij.process.Blitter
dst=src*src
multiply(FHT) - Method in class ij.process.FHT
Returns the image resulting from the point by point Hartley multiplication of this image and the specified image.
multiply(double) - Method in class ij.process.FloatProcessor
 
multiply(double) - Method in class ij.process.ImageProcessor
Multiplies each pixel in the image or ROI by 'value'.
multiply(double) - Method in class ij.process.ShortProcessor
 
myData - Variable in class nom.tam.fits.BasicHDU
The associated data unit.
myHeader - Variable in class nom.tam.fits.BasicHDU
The associated header.

N

n(double) - Method in class ij.plugin.filter.Analyzer
Converts a number to a formatted string with a tab at the end.
name - Variable in class ij.gui.Roi
 
NaN - Static variable in interface ij.macro.MacroConstants
 
nBins - Static variable in class ij.gui.HistogramWindow
 
nBins - Variable in class ij.process.ImageStatistics
 
nCoordinates - Variable in class ij.process.EllipseFitter
Initialized by makeRoi()
NeatDistorter - Class in skyview.geometry.distorter
This class implements the NEAT radial distortion.
NeatDistorter(double, double, double) - Constructor for class skyview.geometry.distorter.NeatDistorter
 
NeatDistorter.NeatInvDistorter - Class in skyview.geometry.distorter
 
NeatDistorter.NeatInvDistorter() - Constructor for class skyview.geometry.distorter.NeatDistorter.NeatInvDistorter
 
nElements(Object) - Static method in class nom.tam.util.ArrayFuncs
Count the number of elements in an array
NEQ - Static variable in interface ij.macro.MacroConstants
 
NEW_ARRAY - Static variable in interface ij.macro.MacroConstants
 
NEW_IMAGE - Static variable in interface ij.macro.MacroConstants
 
NEW_SUBFILE_TYPE - Static variable in class ij.io.TiffDecoder
 
NewImage - Class in ij.gui
New image dialog box plus several static utility methods for creating images.
NewImage() - Constructor for class ij.gui.NewImage
 
newImage(String, String, int, int, int) - Static method in class ij.IJ
Opens a new image.
newInstance(Class, int) - Static method in class nom.tam.util.ArrayFuncs
Allocate an array dynamically.
newInstance(Class, int[]) - Static method in class nom.tam.util.ArrayFuncs
Allocate an array dynamically.
newMaxCount - Variable in class ij.gui.HistogramWindow
 
newPixels - Variable in class ij.process.ImageProcessor
 
NewPlugin - Class in ij.plugin
This class creates a new macro or the Java source for a new plugin.
NewPlugin() - Constructor for class ij.plugin.NewPlugin
 
newWindowCreated - Static variable in class ij.plugin.Converter
Used by WindowManager.setCurrentWindow().
nextCard() - Method in class nom.tam.fits.Header
Get the next card in the Header using the current iterator
NextImageOpener - Class in ij.plugin
 
NextImageOpener() - Constructor for class ij.plugin.NextImageOpener
 
NIH_IMAGE_HDR - Static variable in class ij.io.TiffDecoder
 
nImages - Variable in class ij.io.FileInfo
 
NIMAGES - Static variable in interface ij.macro.MacroConstants
 
NNSampler - Class in skyview.geometry.sampler
This class implements a nearest neighbor sampling
NNSampler() - Constructor for class skyview.geometry.sampler.NNSampler
 
NO_CHANGES - Static variable in interface ij.plugin.filter.PlugInFilter
Set this flag if the filter makes no changes to the pixel data.
NO_COVERAGE - Static variable in class skyview.geometry.imagefinder.Border
 
NO_IMAGE_REQUIRED - Static variable in interface ij.plugin.filter.PlugInFilter
Set this flag if the filter does not require that an image be open.
NO_LUT_UPDATE - Static variable in class ij.process.ImageProcessor
 
NO_THRESHOLD - Static variable in class ij.process.ImageProcessor
Value returned by getMinThreshold() when thresholding is not enabled.
NO_UNDO - Static variable in interface ij.plugin.filter.PlugInFilter
Set this flag if the filter does not require undo.
noImage() - Static method in class ij.IJ
Displays a "no images are open" dialog box.
noise(double) - Method in class ij.process.ByteProcessor
 
noise(double) - Method in class ij.process.ColorProcessor
 
noise(double) - Method in class ij.process.FloatProcessor
 
noise(double) - Method in class ij.process.ImageProcessor
Adds random noise to the image or ROI.
noise(double) - Method in class ij.process.ShortProcessor
 
NOISE_SD - Static variable in class ij.Prefs
 
nom - package nom
 
nom.tam - package nom.tam
 
nom.tam.fits - package nom.tam.fits
 
nom.tam.image - package nom.tam.image
 
nom.tam.util - package nom.tam.util
 
NON_PHYSICAL - Static variable in class skyview.geometry.imagefinder.Border
 
NONE - Static variable in class ij.measure.Calibration
 
NOP - Static variable in interface ij.macro.MacroConstants
 
NORMAL - Static variable in class ij.gui.Roi
 
NORMAL_RETURN - Static variable in class ij.Menus
 
north(ImageProcessor) - Method in class ij.plugin.filter.Shadows
 
northeast(ImageProcessor) - Method in class ij.plugin.filter.Shadows
 
northwest(ImageProcessor) - Method in class ij.plugin.filter.Shadows
 
not(ShapeRoi) - Method in class ij.gui.ShapeRoi
Unary subtraction operator.
NOT_INSTALLED - Static variable in class ij.Menus
 
NOT_PASTING - Static variable in class ij.gui.Roi
 
NOTHING - Static variable in class ij.plugin.filter.ParticleAnalyzer
 
NOTHING - Static variable in class ij.Undo
 
nPoints - Variable in class ij.gui.PolygonRoi
 
npoints - Variable in class ij.gui.Wand
The number of points in the generated outline.
NRESULTS - Static variable in interface ij.macro.MacroConstants
 
NSLICES - Static variable in interface ij.macro.MacroConstants
 
nudge(int) - Method in class ij.gui.Roi
Nudge ROI one pixel on arrow key press.
nudgeCorner(int) - Method in class ij.gui.Line
Nudge end point of line by one pixel.
nudgeCorner(int) - Method in class ij.gui.Roi
Nudge lower right corner of rectangular and oval ROIs by one pixel based on arrow key press.
NUMBER - Static variable in interface ij.macro.MacroConstants
 
numberField - Variable in class ij.gui.GenericDialog
 
NUMERIC_FUNCTION - Static variable in interface ij.macro.MacroConstants
 
numericFunctionIDs - Static variable in interface ij.macro.MacroConstants
 
numericFunctions - Static variable in interface ij.macro.MacroConstants
 

O

offScreenX(int) - Method in class ij.gui.ImageCanvas
Converts a screen x-coordinate to an offscreen x-coordinate.
offScreenXD(int) - Method in class ij.gui.ImageCanvas
Converts a screen x-coordinate to a floating-point offscreen x-coordinate.
offScreenY(int) - Method in class ij.gui.ImageCanvas
Converts a screen y-coordinate to an offscreen y-coordinate.
offScreenYD(int) - Method in class ij.gui.ImageCanvas
Converts a screen y-coordinate to a floating-point offscreen y-coordinate.
offset - Variable in class ij.io.FileInfo
 
okForGif(ImagePlus) - Static method in class ij.io.FileSaver
 
okForJpeg(ImagePlus) - Static method in class ij.io.FileSaver
Always returns true.
oldHeight - Variable in class ij.gui.Roi
 
oldWidth - Variable in class ij.gui.Roi
 
oldX - Variable in class ij.gui.Roi
 
oldY - Variable in class ij.gui.Roi
 
open(String, int, int, int, int, int) - Static method in class ij.gui.NewImage
 
open() - Static method in class ij.IJ
Displays a file open dialog box and then opens the tiff, dicom, fits, pgm, jpeg, bmp, gif, lut, roi, or text file selected by the user.
open(String) - Static method in class ij.IJ
Opens and displays a tiff, dicom, fits, pgm, jpeg, bmp, gif, lut, roi, or text file.
open() - Method in class ij.io.FileOpener
Opens the image and displays it.
open(boolean) - Method in class ij.io.FileOpener
Opens the image.
open() - Method in class ij.io.Opener
Displays a file open dialog box and then opens the tiff, dicom, fits, pgm, jpeg, bmp, gif, lut, roi, or text file selected by the user.
open(String) - Method in class ij.io.Opener
Opens and displays a tiff, dicom, fits, pgm, jpeg, bmp, gif, lut, roi, or text file.
OPEN - Static variable in interface ij.macro.MacroConstants
 
open(String) - Static method in class ij.Macro
 
open(String) - Method in class ij.plugin.DICOM
Opens the specified file as a DICOM.
open(String, String) - Method in class ij.plugin.frame.Editor
 
open() - Method in class ij.plugin.TextReader
Displays a file open dialog and opens the specified text file as a float image.
open(String) - Method in class ij.plugin.TextReader
Opens the specified text file as a float image.
open100Percent - Static variable in class ij.Prefs
Open images at 100% magnification
open16bitAsciiImage(StreamTokenizer, int, int) - Method in class ij.plugin.PGM_Reader
 
open16bitRawImage(InputStream, int, int) - Method in class ij.plugin.PGM_Reader
 
openAsciiImage(StreamTokenizer, int, byte[]) - Method in class ij.plugin.PGM_Reader
 
OpenDialog - Class in ij.io
This class displays a dialog window from which the user can select an input file.
OpenDialog(String, String) - Constructor for class ij.io.OpenDialog
Displays a file open dialog with 'title' as the title.
OpenDialog(String, String, String) - Constructor for class ij.io.OpenDialog
Displays a file open dialog, using the specified default directory and file name.
Opener - Class in ij.io
Opens tiff (and tiff stacks), dicom, fits, pgm, jpeg, bmp or gif images, and look-up tables, using a file open dialog or a path.
Opener() - Constructor for class ij.io.Opener
 
openFile(String) - Method in class ij.plugin.PGM_Reader
 
openHeader(StreamTokenizer) - Method in class ij.plugin.PGM_Reader
 
openImage(String) - Static method in class ij.IJ
Open the specified file as a tiff, bmp, dicom, fits, pgm, gif or jpeg image and returns an ImagePlus object if successful.
openImage() - Method in class ij.io.ImportDialog
Displays the dialog and opens the specified image or images.
openImage(String, String) - Method in class ij.io.Opener
Attempts to open the specified file as a tiff, bmp, dicom, fits, pgm, gif or jpeg image.
openImage(String) - Method in class ij.io.Opener
Attempts to open the specified file as a tiff, bmp, dicom, fits, pgm, gif or jpeg.
openMultiple() - Method in class ij.io.Opener
Displays a JFileChooser and then opens the tiff, dicom, fits, pgm, jpeg, bmp, gif, lut, roi, or text files selected by the user.
openRawImage(InputStream, int, byte[]) - Method in class ij.plugin.PGM_Reader
 
openRoi(String) - Method in class ij.io.Opener
Attempts to open the specified ROI, returning null if unsuccessful.
openRoi(String, String) - Method in class ij.plugin.RoiReader
 
openTiff(String, String) - Method in class ij.io.Opener
Attempts to open the specified file as a tiff.
openTiff(InputStream, String) - Method in class ij.io.Opener
Attempts to open the specified inputStream as a TIFF, returning an ImagePlus object if successful.
openTiffStack(FileInfo[]) - Method in class ij.io.Opener
Attemps to open a tiff file as a stack.
openURL(String) - Method in class ij.io.Opener
Attempts to open the specified url as a tiff, zip compressed tiff, dicom, gif or jpeg.
openURL(String) - Static method in class ij.plugin.BrowserLauncher
Attempts to open the default web browser to the given URL.
openZip(String) - Method in class ij.plugin.Zip_Reader
 
Options - Class in ij.plugin
This plugin implements most of the commands in the Edit/Options sub-menu.
Options() - Constructor for class ij.plugin.Options
 
OPTIONS - Static variable in class ij.Prefs
 
or(ShapeRoi) - Method in class ij.gui.ShapeRoi
Unary union operator.
OR - Static variable in interface ij.process.Blitter
dst=dst OR src
or(int) - Method in class ij.process.FloatProcessor
 
or(int) - Method in class ij.process.ImageProcessor
Binary OR of each pixel in the image or ROI with 'value'.
or(int) - Method in class ij.process.ShortProcessor
 
originalBitDepth - Variable in class ij.process.FHT
Used by the FFT class.
originalColorModel - Variable in class ij.process.FHT
Used by the FFT class.
originalHeight - Variable in class ij.process.FHT
Used by the FFT class.
originalWidth - Variable in class ij.process.FHT
Used by the FFT class.
outDepth - Variable in class skyview.geometry.Sampler
 
outHeight - Variable in class skyview.geometry.Sampler
 
outImage - Variable in class skyview.geometry.Sampler
The output image.
outline() - Method in class ij.process.BinaryProcessor
 
outline() - Method in class ij.process.ByteProcessor
 
OUTLINES - Static variable in class ij.plugin.filter.ParticleAnalyzer
 
outOfMemory(String) - Static method in class ij.IJ
Displays an "out of memory" message to the "Log" window.
output - Variable in class skyview.executive.Imager
The current output image
output - Variable in class skyview.geometry.imagefinder.Border
The output image
outWidth - Variable in class skyview.geometry.Sampler
 
OVAL - Static variable in class ij.gui.Roi
 
OVAL - Static variable in class ij.gui.Toolbar
 
OvalRoi - Class in ij.gui
Oval region of interest
OvalRoi(int, int, int, int) - Constructor for class ij.gui.OvalRoi
Creates a new OvalRoi.
OvalRoi(int, int, ImagePlus) - Constructor for class ij.gui.OvalRoi
Starts the process of creating a user-defined OvalRoi.
OvalRoi(int, int, int, int, ImagePlus) - Constructor for class ij.gui.OvalRoi
Obsolete
OVER_UNDER_LUT - Static variable in class ij.process.ImageProcessor
 

P

p - Variable in class skyview.executive.Imager
The Projection object for the output image.
padding(int) - Static method in class nom.tam.fits.FitsUtil
How many bytes are needed to fill the last 2880 block?
paint(Graphics) - Method in class ij.gui.GenericDialog
 
paint(Graphics) - Method in class ij.gui.ImageCanvas
 
paint(Graphics) - Method in class ij.gui.ImageWindow
 
paint(Graphics) - Method in class ij.gui.MultiLineLabel
 
paint(Graphics) - Method in class ij.gui.ProgressBar
 
paint(Graphics) - Method in class ij.gui.Toolbar
 
PARSE_FLOAT - Static variable in interface ij.macro.MacroConstants
 
PARSE_INT - Static variable in interface ij.macro.MacroConstants
 
parseCoords() - Method in class skyview.request.SourceCoordinates
extract coordinates that match coordinate system of user patch from query return
parseDouble(String, double) - Static method in class ij.util.Tools
Returns a double containg the value represented by the specified String.
parseDouble(String) - Static method in class ij.util.Tools
Returns a double containg the value represented by the specified String.
parseHeader(Header) - Method in class nom.tam.fits.ImageData
 
ParticleAnalyzer - Class in ij.plugin.filter
Implements ImageJ's Analyze Particles command.
ParticleAnalyzer(int, int, ResultsTable, double, double) - Constructor for class ij.plugin.filter.ParticleAnalyzer
Construct a ParticleAnalyzer.
ParticleAnalyzer() - Constructor for class ij.plugin.filter.ParticleAnalyzer
Default constructor
particleAnalyzerFill(int, int, double, double, ImageProcessor, Rectangle) - Method in class ij.process.FloodFiller
This method is used by the particle analyzer to remove interior holes from particle masks.
paste() - Method in class ij.gui.ImageWindow
 
paste() - Method in class ij.ImagePlus
Inserts the contents of the internal clipboard into the active image.
PASTE - Static variable in class ij.Undo
 
PasteController - Class in ij.plugin.frame
Implements ImageJ's Paste Control window.
PasteController() - Constructor for class ij.plugin.frame.PasteController
 
pasteMode - Static variable in class ij.gui.Roi
 
path - Variable in class ij.io.PluginClassLoader
 
PERIMETER - Static variable in interface ij.measure.Measurements
 
PERIMETER - Static variable in class ij.measure.ResultsTable
 
PGM - Static variable in class ij.io.FileInfo
 
PGM - Static variable in class ij.io.Opener
 
PGM_Reader - Class in ij.plugin
This plugin opens PxM format images.
PGM_Reader() - Constructor for class ij.plugin.PGM_Reader
 
ph - Variable in class ij.process.ImageStatistics
 
PHOTO_INTERP - Static variable in class ij.io.TiffDecoder
 
PI - Static variable in interface ij.macro.MacroConstants
 
pixelCount - Variable in class ij.process.ImageStatistics
 
pixelDepth - Variable in class ij.ImagePlus
Obsolete.
pixelDepth - Variable in class ij.io.FileInfo
 
pixelDepth - Variable in class ij.measure.Calibration
Pixel depth in 'unit's
pixelHeight - Variable in class ij.ImagePlus
Obsolete.
pixelHeight - Variable in class ij.io.FileInfo
 
pixelHeight - Variable in class ij.measure.Calibration
Pixel height in 'unit's
pixels - Variable in class ij.io.FileInfo
 
pixels - Variable in class ij.process.ByteProcessor
 
pixels - Variable in class ij.process.ColorProcessor
 
pixels(boolean) - Method in class skyview.vo.CatalogProcessor
Transform the catalog positions into pixel positions.
pixelWidth - Variable in class ij.ImagePlus
Obsolete.
pixelWidth - Variable in class ij.io.FileInfo
 
pixelWidth - Variable in class ij.measure.Calibration
Pixel width in 'unit's
PLANAR_CONFIGURATION - Static variable in class ij.io.TiffDecoder
 
Plot - Class in ij.gui
This class is an image that line graphs can be drawn on.
Plot(String, String, String, float[], float[]) - Constructor for class ij.gui.Plot
Construct a new PlotWindow.
Plot(String, String, String, double[], double[]) - Constructor for class ij.gui.Plot
This version of the constructor excepts double arrays.
PLOT - Static variable in interface ij.macro.MacroConstants
 
plotHeight - Static variable in class ij.gui.PlotWindow
The height of the plot in pixels.
plotScale - Variable in class ij.gui.HistogramWindow
 
plotWidth - Static variable in class ij.gui.PlotWindow
The width of the plot in pixels.
PlotWindow - Class in ij.gui
This class is an extended ImageWindow that displays line graphs.
PlotWindow(String, String, String, float[], float[]) - Constructor for class ij.gui.PlotWindow
Construct a new PlotWindow.
PlotWindow(String, String, String, double[], double[]) - Constructor for class ij.gui.PlotWindow
This version of the constructor excepts double arrays.
PLUGIN - Static variable in class ij.plugin.NewPlugin
 
PlugIn - Interface in ij.plugin
Plugins that acquire images or display windows should implement this interface.
PLUGIN_FILTER - Static variable in class ij.plugin.NewPlugin
 
PLUGIN_FRAME - Static variable in class ij.plugin.NewPlugin
 
PluginClassLoader - Class in ij.io
ImageJ uses this class loader to load plugins and resources from the plugins directory and immediate subdirectories.
PluginClassLoader(String) - Constructor for class ij.io.PluginClassLoader
Creates a new PluginClassLoader that searches in the directory path passed as a parameter.
PlugInFilter - Interface in ij.plugin.filter
ImageJ plugins that process an image should implement this interface.
PlugInFrame - Class in ij.plugin.frame
This is a closeable window that plugins can extend.
PlugInFrame(String) - Constructor for class ij.plugin.frame.PlugInFrame
 
PLUGINS_MENU - Static variable in class ij.Menus
 
PLUS_EQUAL - Static variable in interface ij.macro.MacroConstants
 
PLUS_PLUS - Static variable in interface ij.macro.MacroConstants
 
PNG - Static variable in class ij.io.Opener
 
PNG_Writer - Class in ij.plugin
Saves in PNG format using the ImageIO class available in java 1.4 or later.
PNG_Writer() - Constructor for class ij.plugin.PNG_Writer
 
PNM_Writer - Class in ij.plugin
 
PNM_Writer() - Constructor for class ij.plugin.PNM_Writer
 
POINT - Static variable in class ij.gui.Roi
 
POINT - Static variable in class ij.gui.Toolbar
 
pointAutoMeasure - Static variable in class ij.Prefs
Point tool auto-measure mode.
pointAutoNextSlice - Static variable in class ij.Prefs
Point tool auto-next slice mode (not saved in IJ_Prefs).
PointRoi - Class in ij.gui
This class represents selection consisting of one or more points.
PointRoi(int[], int[], int) - Constructor for class ij.gui.PointRoi
Creates a new PointRoi using the specified offscreen coordinates.
PointRoi(int, int, ImagePlus) - Constructor for class ij.gui.PointRoi
Creates a new PointRoi using the specified offscreen coordinates.
pointToData(Data) - Method in class nom.tam.fits.Header
Deprecated. Use the appropriate Header constructor.
POLY2 - Static variable in class ij.measure.Calibration
 
POLY2 - Static variable in class ij.measure.CurveFitter
 
POLY3 - Static variable in class ij.measure.Calibration
 
POLY3 - Static variable in class ij.measure.CurveFitter
 
POLY4 - Static variable in class ij.measure.Calibration
 
POLY4 - Static variable in class ij.measure.CurveFitter
 
POLYGON - Static variable in class ij.gui.Roi
 
POLYGON - Static variable in class ij.gui.Toolbar
 
PolygonFiller - Class in ij.process
This class fills polygons using the scan-line filling algorithm described at "http://www.cs.rit.edu/~icss571/filling/".
PolygonFiller() - Constructor for class ij.process.PolygonFiller
Constructs a PolygonFiller.
PolygonFiller(int[], int[], int) - Constructor for class ij.process.PolygonFiller
Constructs a PolygonFiller using the specified polygon.
PolygonRoi - Class in ij.gui
This class represents a polygon region of interest or polyline of interest.
PolygonRoi(int[], int[], int, int) - Constructor for class ij.gui.PolygonRoi
Creates a new polygon or polyline ROI from x and y coordinate arrays.
PolygonRoi(Polygon, int) - Constructor for class ij.gui.PolygonRoi
Creates a new polygon or polyline ROI from a Polygon.
PolygonRoi(int[], int[], int, ImagePlus, int) - Constructor for class ij.gui.PolygonRoi
Obsolete
PolygonRoi(int, int, ImagePlus) - Constructor for class ij.gui.PolygonRoi
Starts the process of creating a new user-generated polygon or polyline ROI.
POLYLINE - Static variable in class ij.gui.Roi
 
POLYLINE - Static variable in class ij.gui.Toolbar
 
Position - Class in skyview.geometry
This class represents a position in the sky.
Position(double, double) - Constructor for class skyview.geometry.Position
Define a position object in the standard (J2000) frame
Position(double, double, String) - Constructor for class skyview.geometry.Position
Define a position object used a specified frame
positionWindow() - Method in class ij.plugin.frame.Editor
 
postProcess(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.vo.CatalogProcessor
 
POW - Static variable in interface ij.macro.MacroConstants
 
POWER - Static variable in class ij.measure.Calibration
 
POWER - Static variable in class ij.measure.CurveFitter
 
powerOf2Size() - Method in class ij.process.FHT
Returns true of this FHT contains a square image with a width that is a power of two.
precession() - Method in class skyview.geometry.csys.JulianCoordinateSystem
Get the Julian Precession Matrix for a given epoch (from J2000).
precision - Static variable in class ij.plugin.filter.Analyzer
 
PREDEFINED_FUNCTION - Static variable in interface ij.macro.MacroConstants
 
PREDICTOR - Static variable in class ij.io.TiffDecoder
 
preferredLayoutSize(Container) - Method in class ij.gui.ImageLayout
Returns the preferred dimensions for this layout.
Prefs - Class in ij
This class contains the ImageJ preferences, which are loaded from the "IJ_Props.txt" and "IJ_Prefs.txt" files.
Prefs() - Constructor for class ij.Prefs
 
PREFS_NAME - Static variable in class ij.Prefs
 
prepareScaling(double[]) - Method in class skyview.util.HistScaler
 
prepareScaling(double[]) - Method in class skyview.util.LinearScaler
Set up the scaling.
prepareScaling(double[]) - Method in class skyview.util.LogScaler
Prepare to scale the data
prepareScaling(double[]) - Method in class skyview.util.Scaler
Get ready for scaling in this particular instance.
prepareScaling(double[]) - Method in class skyview.util.SqrtScaler
Prepare to scale the data
preserves() - Method in class skyview.geometry.distorter.DSSDistorter
 
prev() - Method in interface nom.tam.util.Cursor
Get the previous element
previousRoi - Static variable in class ij.gui.Roi
 
primary - Variable in class skyview.geometry.sampler.ComboSampler
 
primitiveArrayRecurse(Object) - Method in class nom.tam.util.BufferedDataInputStream
Read recursively over a multi-dimensional array.
primitiveArrayRecurse(Object) - Method in class nom.tam.util.BufferedFile
 
PrimitiveInfo - Interface in nom.tam.util
This interface collects some information about Java primitives.
PRINT - Static variable in interface ij.macro.MacroConstants
 
print(Graphics, PageFormat, int) - Method in class ij.plugin.filter.Printer
 
Printer - Class in ij.plugin.filter
This plugin implements the File/Page Setup and File/Print commands.
Printer() - Constructor for class ij.plugin.filter.Printer
 
printOut() - Method in class skyview.geometry.Rotater
Debug output
printVert(int, double[], double[], String) - Static method in class skyview.geometry.sampler.ClipSampler
Debugging routine that prints a list of vertices.
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.geometry.deedger.BoundaryAverage
Initialized the de-edger.
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.geometry.deedger.BoundaryMedian
Initialize the de-edger.
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.geometry.deedger.BoundaryMedianDSS2
Initialize the de-edger.
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.geometry.deedger.ImageMedian
Initialized the de-edger.
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.geometry.Deedger
 
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.geometry.Mosaicker
Populate the pixel values of the output mosaic.
process(Image[], Image, int[], Sampler, DepthSampler) - Method in interface skyview.geometry.Processor
Perform the processing task associated with this object.
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.ij.IJProcessor
 
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.vo.CatalogPostProcessor
Perform the processing task associated with this object.
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.vo.CatalogProcessor
Start up the processing.
Processor - Interface in skyview.geometry
 
processStack - Variable in class ij.plugin.filter.ParticleAnalyzer
 
processSurvey(int, String) - Method in class skyview.executive.Imager
Process a particular survey.
processWindowEvent(WindowEvent) - Method in class ij.plugin.frame.RoiManager
 
processWindowEvent(WindowEvent) - Method in class ij.text.TextWindow
 
profile - Variable in class ij.gui.ProfilePlot
 
ProfilePlot - Class in ij.gui
Creates a density profile plot of a rectangular selection or line selection.
ProfilePlot() - Constructor for class ij.gui.ProfilePlot
 
ProfilePlot(ImagePlus) - Constructor for class ij.gui.ProfilePlot
 
ProfilePlot(ImagePlus, boolean) - Constructor for class ij.gui.ProfilePlot
 
Profiler - Class in ij.plugin.filter
Implements the Process/Plot Profile and Edit/Options/Profile Plot Options commands.
Profiler() - Constructor for class ij.plugin.filter.Profiler
 
Program - Class in ij.macro
An object of this type is a tokenized macro file and the associated symbol table.
Program() - Constructor for class ij.macro.Program
 
ProgressBar - Class in ij.gui
This is the progress bar that is displayed in the lower right hand corner of the ImageJ window.
ProgressBar(int, int) - Constructor for class ij.gui.ProgressBar
This constructor is called once by ImageJ at startup.
Projecter - Class in skyview.geometry
This class projects a point from the celestial sphere to a projection plane.
Projecter() - Constructor for class skyview.geometry.Projecter
 
Projection - Class in skyview.geometry
This class implements projection algorithms to/from a projection plane and the unit sphere.
Projection(String) - Constructor for class skyview.geometry.Projection
Get the correct projection
Projection(String, double[]) - Constructor for class skyview.geometry.Projection
Create the specified projection.
Projector - Class in ij.plugin.filter
This plugin creates a sequence of projections of a rotating volume (stack of slices) onto a plane using nearest-point (surface), brightest-point, or mean-value projection or a weighted combination of nearest- point projection with either of the other two methods (partial opacity).
Projector() - Constructor for class ij.plugin.filter.Projector
 
PROPS_NAME - Static variable in class ij.Prefs
 
ProxyImage - Class in skyview.survey
 
ProxyImage(String, WCS, int, int, int) - Constructor for class skyview.survey.ProxyImage
Construct a WCS
put(String, String) - Static method in class skyview.executive.Settings
Save a key and value
PUT_PIXEL - Static variable in interface ij.macro.MacroConstants
 
putBehind() - Static method in class ij.WindowManager
Activates the next window on the window list.
putByteRow(ImageStack, int, int, int, int[]) - Method in class ij.plugin.filter.Projector
 
putColumn(ImageProcessor, int, int, float[], int) - Method in class ij.plugin.Slicer
 
putColumn(int, int, int[], int) - Method in class ij.process.ImageProcessor
Inserts the pixels contained in 'data' into a column starting at (x,y).
putPixel(int, int, int) - Method in class ij.process.ByteProcessor
Stores the specified value at (x,y).
putPixel(int, int, int[]) - Method in class ij.process.ColorProcessor
Sets a pixel in the image using a 3 element (R, G and B) int array of samples.
putPixel(int, int, int) - Method in class ij.process.ColorProcessor
Stores the specified value at (x,y).
putPixel(int, int, int[]) - Method in class ij.process.FloatProcessor
Sets a pixel in the image using a one element int array.
putPixel(int, int, int) - Method in class ij.process.FloatProcessor
Stores the specified value at (x,y).
putPixel(int, int, int[]) - Method in class ij.process.ImageProcessor
Sets a pixel in the image using an int array of samples.
putPixel(int, int, int) - Method in class ij.process.ImageProcessor
Stores the specified value at (x,y).
putPixel(int, int, int) - Method in class ij.process.ShortProcessor
Stores the specified value at (x,y).
putPixelValue(int, int, double) - Method in class ij.process.ByteProcessor
Stores the specified real value at (x,y).
putPixelValue(int, int, double) - Method in class ij.process.ColorProcessor
Stores the specified real grayscale value at (x,y).
putPixelValue(int, int, double) - Method in class ij.process.FloatProcessor
Stores the specified real value at (x,y).
putPixelValue(int, int, double) - Method in class ij.process.ImageProcessor
Stores the specified value at (x,y).
putPixelValue(int, int, double) - Method in class ij.process.ShortProcessor
Stores the specified real value at (x,y).
putRGBRow(ImageStack, int, int, int, int[]) - Method in class ij.plugin.filter.Projector
 
putRow(ImageProcessor, int, int, float[], int) - Method in class ij.plugin.Slicer
 
putRow(int, int, int[], int) - Method in class ij.process.ImageProcessor
Inserts the pixels contained in 'data' into a horizontal line starting at (x,y).
pw - Variable in class ij.process.ImageStatistics
 

Q

quadrantSwapNeeded - Variable in class ij.process.FHT
Used by the FFT class.
quit() - Method in class ij.ImageJ
Called by ImageJ when the user selects Quit.
quitting() - Method in class ij.ImageJ
Returns true if ImageJ is exiting.

R

rand(int, int) - Method in class ij.plugin.filter.SaltAndPepper
 
RANDOM - Static variable in interface ij.macro.MacroConstants
 
RandomAccess - Interface in nom.tam.util
These packages define the methods which indicate that an i/o stream may be accessed in arbitrary order.
RandomAccessStream - Class in ij.io
This is a class that uses a memory cache to allow seeking within an InputStream.
RandomAccessStream(InputStream) - Constructor for class ij.io.RandomAccessStream
Constructs a RandomAccessStream from an InputStream.
RandomAccessStream(RandomAccessFile) - Constructor for class ij.io.RandomAccessStream
Constructs a RandomAccessStream from an RandomAccessFile.
RandomGroupsData - Class in nom.tam.fits
This class instantiates FITS Random Groups data.
RandomGroupsData() - Constructor for class nom.tam.fits.RandomGroupsData
Create the equivalent of a null data element.
RandomGroupsData(Object[][]) - Constructor for class nom.tam.fits.RandomGroupsData
Create a RandomGroupsData object using the specified object to initialize the data array.
RandomGroupsHDU - Class in nom.tam.fits
Random groups HDUs.
RandomGroupsHDU(Header, Data) - Constructor for class nom.tam.fits.RandomGroupsHDU
Create an HDU from the given header and data
randomInit(String) - Method in class nom.tam.fits.Fits
Initialize using buffered random access
rank(ImageProcessor, double, int) - Method in class ij.plugin.filter.RankFilters
 
RankFilters - Class in ij.plugin.filter
This plugin implements the Median, Mean, Minimum, Maximum, Variance and Despeckle commands.
RankFilters() - Constructor for class ij.plugin.filter.RankFilters
 
rankFloat(ImageProcessor, double, int) - Method in class ij.plugin.filter.RankFilters
 
rankRGB(ImageProcessor, double, int) - Method in class ij.plugin.filter.RankFilters
 
RAW - Static variable in class ij.io.FileInfo
 
Raw - Class in ij.plugin
This plugin implements the Acquire/Raw command.
Raw() - Constructor for class ij.plugin.Raw
 
read() - Method in class ij.io.RandomAccessStream
 
read(byte[], int, int) - Method in class ij.io.RandomAccessStream
 
read(ArrayDataInput) - Method in class nom.tam.fits.AsciiTable
Read in an ASCII table.
read(ArrayDataInput) - Method in class nom.tam.fits.BasicHDU
 
read(ArrayDataInput) - Method in class nom.tam.fits.BinaryTable
Read the data -- or defer reading on random access
read(ArrayDataInput) - Method in class nom.tam.fits.Data
Read a data array into the current object and if needed position to the beginning of the next FITS block.
read() - Method in class nom.tam.fits.Fits
Return all HDUs for the Fits object.
read(InputStream) - Method in class nom.tam.fits.Fits
Read a FITS file from an InputStream object.
read(ArrayDataInput) - Method in interface nom.tam.fits.FitsElement
Read the contents of the element from an input source.
read(ArrayDataInput) - Method in class nom.tam.fits.FitsHeap
Read the heap
read(ArrayDataInput) - Method in class nom.tam.fits.Header
Read a stream for header data.
read(ArrayDataInput) - Method in class nom.tam.fits.ImageData
 
read(ArrayDataInput) - Method in class nom.tam.fits.RandomGroupsData
Read the RandomGroupsData
read(ArrayDataInput) - Method in class nom.tam.fits.UndefinedData
 
read(byte[]) - Method in interface nom.tam.util.ArrayDataInput
 
read(boolean[]) - Method in interface nom.tam.util.ArrayDataInput
 
read(short[]) - Method in interface nom.tam.util.ArrayDataInput
 
read(char[]) - Method in interface nom.tam.util.ArrayDataInput
 
read(int[]) - Method in interface nom.tam.util.ArrayDataInput
 
read(long[]) - Method in interface nom.tam.util.ArrayDataInput
 
read(float[]) - Method in interface nom.tam.util.ArrayDataInput
 
read(double[]) - Method in interface nom.tam.util.ArrayDataInput
 
read(byte[], int, int) - Method in interface nom.tam.util.ArrayDataInput
 
read(boolean[], int, int) - Method in interface nom.tam.util.ArrayDataInput
 
read(char[], int, int) - Method in interface nom.tam.util.ArrayDataInput
 
read(short[], int, int) - Method in interface nom.tam.util.ArrayDataInput
 
read(int[], int, int) - Method in interface nom.tam.util.ArrayDataInput
 
read(long[], int, int) - Method in interface nom.tam.util.ArrayDataInput
 
read(float[], int, int) - Method in interface nom.tam.util.ArrayDataInput
 
read(double[], int, int) - Method in interface nom.tam.util.ArrayDataInput
 
read(byte[], int, int) - Method in class nom.tam.util.BufferedDataInputStream
Read a byte array.
read(boolean[]) - Method in class nom.tam.util.BufferedDataInputStream
Read a boolean array
read(boolean[], int, int) - Method in class nom.tam.util.BufferedDataInputStream
Read a boolean array.
read(short[]) - Method in class nom.tam.util.BufferedDataInputStream
Read a short array
read(short[], int, int) - Method in class nom.tam.util.BufferedDataInputStream
Read a short array
read(char[]) - Method in class nom.tam.util.BufferedDataInputStream
Read a character array
read(char[], int, int) - Method in class nom.tam.util.BufferedDataInputStream
Read a character array
read(int[]) - Method in class nom.tam.util.BufferedDataInputStream
Read an integer array
read(int[], int, int) - Method in class nom.tam.util.BufferedDataInputStream
Read an integer array
read(long[]) - Method in class nom.tam.util.BufferedDataInputStream
Read a long array
read(long[], int, int) - Method in class nom.tam.util.BufferedDataInputStream
Read a long array
read(float[]) - Method in class nom.tam.util.BufferedDataInputStream
Read a float array
read(float[], int, int) - Method in class nom.tam.util.BufferedDataInputStream
Read a float array
read(double[]) - Method in class nom.tam.util.BufferedDataInputStream
Read a double array
read(double[], int, int) - Method in class nom.tam.util.BufferedDataInputStream
Read a double array
read(byte[]) - Method in class nom.tam.util.BufferedFile
Create a buffered file using a mapped /** Read an entire byte array.
read(byte[], int, int) - Method in class nom.tam.util.BufferedFile
Read into a segment of a byte array.
read() - Method in class nom.tam.util.BufferedFile
Read a byte
read(boolean[]) - Method in class nom.tam.util.BufferedFile
 
read(boolean[], int, int) - Method in class nom.tam.util.BufferedFile
 
read(short[]) - Method in class nom.tam.util.BufferedFile
 
read(short[], int, int) - Method in class nom.tam.util.BufferedFile
 
read(char[]) - Method in class nom.tam.util.BufferedFile
 
read(char[], int, int) - Method in class nom.tam.util.BufferedFile
 
read(int[]) - Method in class nom.tam.util.BufferedFile
 
read(int[], int, int) - Method in class nom.tam.util.BufferedFile
 
read(long[]) - Method in class nom.tam.util.BufferedFile
 
read(long[], int, int) - Method in class nom.tam.util.BufferedFile
 
read(float[]) - Method in class nom.tam.util.BufferedFile
 
read(float[], int, int) - Method in class nom.tam.util.BufferedFile
 
read(double[]) - Method in class nom.tam.util.BufferedFile
 
read(double[], int, int) - Method in class nom.tam.util.BufferedFile
 
read(ArrayDataInput) - Method in class nom.tam.util.ColumnTable
Read a table.
readArray(Object) - Method in interface nom.tam.util.ArrayDataInput
Read a generic (possibly multidimenionsional) primitive array.
readArray(Object) - Method in class nom.tam.util.BufferedDataInputStream
Read an object.
readArray(Object) - Method in class nom.tam.util.BufferedFile
This routine provides efficient reading of arrays of any primitive type.
readBoolean() - Method in class nom.tam.util.BufferedDataInputStream
Read a boolean value.
readBoolean() - Method in class nom.tam.util.BufferedFile
Read a boolean
readByte() - Method in class nom.tam.util.BufferedDataInputStream
Read a byte value in the range -128 to 127.
readByte() - Method in class nom.tam.util.BufferedFile
Read a byte
readChar() - Method in class nom.tam.util.BufferedDataInputStream
Read a 2-byte value as a character.
readChar() - Method in class nom.tam.util.BufferedFile
Read a char
readData(ArrayDataInput) - Method in class nom.tam.fits.AsciiTableHDU
Skip the ASCII table and throw an exception.
readData(ArrayDataInput) - Method in class nom.tam.fits.BasicHDU
Read in the Data object for this HDU.
readDouble() - Method in class ij.io.RandomAccessStream
 
readDouble() - Method in class nom.tam.util.BufferedDataInputStream
Read an 8 byte real number.
readDouble() - Method in class nom.tam.util.BufferedFile
Read a double.
readFloat() - Method in class ij.io.RandomAccessStream
 
readFloat() - Method in class nom.tam.util.BufferedDataInputStream
Read a 4 byte real number.
readFloat() - Method in class nom.tam.util.BufferedFile
Read a float.
readFully(byte[]) - Method in class ij.io.RandomAccessStream
 
readFully(byte[], int) - Method in class ij.io.RandomAccessStream
 
readFully(byte[]) - Method in class nom.tam.util.BufferedDataInputStream
Read a buffer and signal an EOF if the buffer cannot be fully read.
readFully(byte[], int, int) - Method in class nom.tam.util.BufferedDataInputStream
Read a buffer and signal an EOF if the requested elements cannot be read.
readFully(byte[]) - Method in class nom.tam.util.BufferedFile
Read a byte array fully.
readFully(byte[], int, int) - Method in class nom.tam.util.BufferedFile
Read a byte array fully.
readHDU() - Method in class nom.tam.fits.Fits
Read the next HDU on the default input stream.
readHeader(ArrayDataInput) - Static method in class nom.tam.fits.Header
Create a header by reading the information from the input stream.
readInt() - Method in class ij.io.RandomAccessStream
 
readInt() - Method in class nom.tam.util.BufferedDataInputStream
Read an integer.
readInt() - Method in class nom.tam.util.BufferedFile
Read an int
readLine() - Method in class nom.tam.util.BufferedDataInputStream
Deprecated. Use BufferedReader methods.
readLine() - Method in class nom.tam.util.BufferedFile
Read a line of input.
readLong() - Method in class ij.io.RandomAccessStream
 
readLong() - Method in class nom.tam.util.BufferedDataInputStream
Read a long.
readLong() - Method in class nom.tam.util.BufferedFile
Read a long.
readPixels(InputStream) - Method in class ij.io.ImageReader
Reads the image from the InputStream and returns the pixel array (byte, short, int or float).
readPixels(InputStream, long) - Method in class ij.io.ImageReader
Skips the specified number of bytes, then reads an image and returns the pixel array (byte, short, int or float).
readPixels(String) - Method in class ij.io.ImageReader
Reads the image from a URL and returns the pixel array (byte, short, int or float).
readPrimitiveArray(Object) - Method in class nom.tam.util.BufferedDataInputStream
Deprecated. See readArray(Object o).
readShort() - Method in class ij.io.RandomAccessStream
 
readShort() - Method in class nom.tam.util.BufferedDataInputStream
Read a 2-byte value as a short (-32788 to 32767)
readShort() - Method in class nom.tam.util.BufferedFile
Read a short
readTrueData(ArrayDataInput) - Method in class nom.tam.fits.BinaryTable
Read table, heap and padding
readUnsignedByte() - Method in class nom.tam.util.BufferedDataInputStream
Read a byte value in the range 0-255.
readUnsignedByte() - Method in class nom.tam.util.BufferedFile
Read an unsigned byte.
readUnsignedShort() - Method in class nom.tam.util.BufferedDataInputStream
Read a 2-byte value in the range 0-65536.
readUnsignedShort() - Method in class nom.tam.util.BufferedFile
Read an unsigned short.
readUTF() - Method in class nom.tam.util.BufferedDataInputStream
Read a String in the UTF format.
readUTF() - Method in class nom.tam.util.BufferedFile
Read a string encoded as a UTF.
RecentOpener - Class in ij
Opens, in a separate thread, files selected from the File/Open Recent submenu.
record - Static variable in class ij.plugin.frame.Recorder
This variable is true if the recorder is running.
record(String) - Static method in class ij.plugin.frame.Recorder
 
record(String, String) - Static method in class ij.plugin.frame.Recorder
 
record(String, String, String) - Static method in class ij.plugin.frame.Recorder
 
record(String, String, String, String) - Static method in class ij.plugin.frame.Recorder
 
record(String, int) - Static method in class ij.plugin.frame.Recorder
 
record(String, int, int) - Static method in class ij.plugin.frame.Recorder
 
record(String, double, double) - Static method in class ij.plugin.frame.Recorder
 
record(String, int, int, int) - Static method in class ij.plugin.frame.Recorder
 
record(String, String, int, int) - Static method in class ij.plugin.frame.Recorder
 
record(String, int, int, int, int) - Static method in class ij.plugin.frame.Recorder
 
record(String, String, String, int, int, int, int, int) - Static method in class ij.plugin.frame.Recorder
 
RECORD_STARTS - Static variable in class ij.plugin.filter.ParticleAnalyzer
Record starting coordinates so outline can be recreated later using doWand(x,y).
Recorder - Class in ij.plugin.frame
This is ImageJ's macro recorder.
Recorder() - Constructor for class ij.plugin.frame.Recorder
 
recordInMacros - Static variable in class ij.plugin.frame.Recorder
Set this variable true to allow recording within IJ.run() calls.
recordOption(String, String) - Static method in class ij.plugin.frame.Recorder
 
recordOption(String) - Static method in class ij.plugin.frame.Recorder
 
recordPath(String, String) - Static method in class ij.plugin.frame.Recorder
 
recordRoi(Polygon, int) - Static method in class ij.plugin.frame.Recorder
 
recordStarts - Variable in class ij.plugin.filter.ParticleAnalyzer
 
RECT - Static variable in interface ij.measure.Measurements
 
RECTANGLE - Static variable in class ij.gui.Roi
 
RECTANGLE - Static variable in class ij.gui.Toolbar
 
RecursiveImageFinder - Class in skyview.geometry.imagefinder
This class finds the best images to be used for sampling using a recursive rectangle algorithm.
RecursiveImageFinder() - Constructor for class skyview.geometry.imagefinder.RecursiveImageFinder
 
red - Variable in class ij.plugin.filter.RGBStackSplitter
These are the three stacks created by the split(ImageStack) method.
RED_LUT - Static variable in class ij.process.ImageProcessor
 
redirectErrorMessages() - Static method in class ij.IJ
Causes IJ.error() and IJ.showMessage() output to be temporarily redirected to the "Log" window.
redisplayPowerSpectrum() - Method in class ij.plugin.FFT
 
reds - Variable in class ij.io.FileInfo
 
register(Class) - Static method in class ij.IJ
Adds the specified class to a Vector to keep it from being garbage collected, which would cause the classes static fields to be reset.
register(Class) - Method in class ij.ImageJ
Adds the specified class to a Vector to keep it from being garbage collected, causing static fields to be reset.
remove(Object) - Method in class nom.tam.util.HashedList
Remove an object from the list giving just the object value.
remove(int) - Method in class nom.tam.util.HashedList
Remove an object from the list giving the object index..
removeAll(Collection) - Method in class nom.tam.util.HashedList
Remove all the elements that are found in another collection.
removeBatchModeImage(ImagePlus) - Static method in class ij.macro.Interpreter
 
removeCard(String) - Method in class nom.tam.fits.Header
Add or replace a key using the preformatted value.
removeImageListener(ImageListener) - Static method in class ij.ImagePlus
 
removeKey(Object) - Method in class nom.tam.util.HashedList
Remove a keyed object from the list.
removeLayoutComponent(Component) - Method in class ij.gui.ImageLayout
Not used by this class.
removeWindow(Frame) - Static method in class ij.WindowManager
Removes the specified window from the Window menu.
RENAME - Static variable in interface ij.macro.MacroConstants
 
repaintImageWindows() - Static method in class ij.WindowManager
Repaints all open image windows.
repaintWindow() - Method in class ij.ImagePlus
Calls draw to draw the image and also repaints the image window to force the information displayed above the image (dimension, type, size) to be updated.
REPLACE - Static variable in interface ij.macro.MacroConstants
 
replace(String, String, String, boolean) - Static method in class skyview.survey.Util
 
replaceKey(Object, Object) - Method in class nom.tam.util.HashedList
Replace the key of a given element.
reposition(Object, long) - Static method in class nom.tam.fits.FitsUtil
Reposition a random access stream to a requested offset
requireControlKey - Static variable in class ij.Prefs
Require control or command key for keybaord shortcuts.
REQUIRES - Static variable in interface ij.macro.MacroConstants
 
RESET - Static variable in interface ij.macro.MacroConstants
 
reset() - Method in class ij.measure.ResultsTable
Clears all the columns and sets the counter to zero.
reset() - Method in class ij.process.ByteProcessor
Reset the image from snapshot.
reset(ImageProcessor) - Method in class ij.process.ByteProcessor
Restore pixels that are within roi but not part of mask.
reset() - Method in class ij.process.ColorProcessor
 
reset(ImageProcessor) - Method in class ij.process.ColorProcessor
 
reset() - Method in class ij.process.FloatProcessor
 
reset(ImageProcessor) - Method in class ij.process.FloatProcessor
 
reset() - Method in class ij.process.ImageProcessor
Restores the pixel data from the snapshot (undo) buffer.
reset(ImageProcessor) - Method in class ij.process.ImageProcessor
Restore pixels that are within roi but not part of the mask.
reset() - Method in class ij.process.ShortProcessor
 
reset(ImageProcessor) - Method in class ij.process.ShortProcessor
 
reset() - Static method in class ij.Undo
 
RESET_MIN_MAX - Static variable in interface ij.macro.MacroConstants
 
RESET_THRESHOLD - Static variable in interface ij.macro.MacroConstants
 
resetCounter() - Static method in class ij.plugin.filter.Analyzer
Sets the measurement counter to zero.
resetCounter - Variable in class ij.plugin.filter.ParticleAnalyzer
 
resetEscape() - Static method in class ij.IJ
This method sets the Esc key to the "up" position.
resetMinAndMax() - Static method in class ij.IJ
Resets the minimum and maximum displayed pixel values to be the same as the min and max pixel values.
resetMinAndMax() - Method in class ij.process.ByteProcessor
Resets this image's LUT.
resetMinAndMax() - Method in class ij.process.FloatProcessor
Recalculates the min and max values used to scale pixel values to 0-255 for display.
resetMinAndMax() - Method in class ij.process.ImageProcessor
For short and float images, recalculates the min and max image values needed to correctly display the image.
resetMinAndMax() - Method in class ij.process.ShortProcessor
Recalculates the min and max values used to scale pixel values to 0-255 for display.
resetRoi() - Method in class ij.process.ImageProcessor
Sets the ROI (Region of Interest) and clipping rectangle to the entire image.
resetSelection() - Method in class ij.text.TextPanel
Clears the selection, if any.
resetThreshold() - Static method in class ij.IJ
Disables thresholding.
resetThreshold() - Method in class ij.process.ImageProcessor
Disables thresholding.
resize(int, int) - Method in class ij.process.ByteProcessor
Creates a new ByteProcessor containing a scaled copy of this image or selection.
resize(int, int) - Method in class ij.process.ColorProcessor
Creates a new ColorProcessor containing a scaled copy of this image or selection.
resize(int, int) - Method in class ij.process.FloatProcessor
Creates a new FloatProcessor containing a scaled copy of this image or selection.
resize(int, int) - Method in class ij.process.ImageProcessor
Creates a new ImageProcessor containing a scaled copy of this image or ROI.
resize(int, int) - Method in class ij.process.ShortProcessor
Creates a new ShortProcessor containing a scaled copy of this image or selection.
resize(int, int) - Method in class ij.process.StackProcessor
Creates a new stack with dimensions 'newWidth' x 'newHeight'.
Resizer - Class in ij.plugin.filter
This plugin implements ImageJ's Resize command.
Resizer() - Constructor for class ij.plugin.filter.Resizer
 
RESIZING - Static variable in class ij.gui.Roi
 
reslice(ImagePlus) - Method in class ij.plugin.Slicer
 
RESOLUTION_UNIT - Static variable in class ij.io.TiffDecoder
 
restore() - Static method in class skyview.executive.Settings
Restore a previously saved state.
RESTORE_PREVIOUS_TOOL - Static variable in interface ij.macro.MacroConstants
 
RESTORE_SETTINGS - Static variable in interface ij.macro.MacroConstants
 
restorePreviousTool() - Method in class ij.gui.Toolbar
 
restoreRoi() - Method in class ij.ImagePlus
 
ResultsTable - Class in ij.measure
This is a table for storing measurement results as columns of numeric values.
ResultsTable() - Constructor for class ij.measure.ResultsTable
Constructs an empty ResultsTable with the counter=0 and no columns.
retainAll(Collection) - Method in class nom.tam.util.HashedList
Retain only elements contained in another collection
RETURN - Static variable in interface ij.macro.MacroConstants
 
revertProcessor() - Method in class skyview.ij.IJProcessor
After manipulating an image using AWT graphics operations.
revertToSaved(ImagePlus) - Method in class ij.io.FileOpener
Restores original disk or network version of image.
rewrite() - Method in class nom.tam.fits.BasicHDU
Rewrite the HDU
rewrite() - Method in class nom.tam.fits.Data
 
rewrite() - Method in interface nom.tam.fits.FitsElement
Rewrite the contents of the element in place.
rewrite() - Method in class nom.tam.fits.FitsHeap
Attempt to rewrite the heap with the current contents.
rewrite() - Method in class nom.tam.fits.Header
Rewrite the header.
rewriteable() - Method in class nom.tam.fits.BasicHDU
Is the HDU rewriteable
rewriteable() - Method in class nom.tam.fits.Data
 
rewriteable() - Method in interface nom.tam.fits.FitsElement
Can this element be rewritten?
rewriteable() - Method in class nom.tam.fits.FitsHeap
 
rewriteable() - Method in class nom.tam.fits.Header
Can the header be rewritten without rewriting the entire file?
RGB - Static variable in class ij.gui.NewImage
 
RGB - Static variable in class ij.io.FileInfo
24-bit interleaved RGB.
rgb - Variable in class ij.process.FHT
Used by the FFT class.
RGB48 - Static variable in class ij.io.FileInfo
48-bit interleaved RGB.
RGB_DILATE - Variable in class ij.process.ColorProcessor
 
RGB_ERODE - Variable in class ij.process.ColorProcessor
 
RGB_FIND_EDGES - Variable in class ij.process.ColorProcessor
 
RGB_MEDIAN - Variable in class ij.process.ColorProcessor
 
RGB_NOISE - Variable in class ij.process.ColorProcessor
 
RGB_PLANAR - Static variable in class ij.io.FileInfo
24-bit planer RGB.
RGB_THRESHOLD - Variable in class ij.process.ColorProcessor
 
RGBStackConverter - Class in ij.plugin
Converts a 2 or 3 slice stack to RGB.
RGBStackConverter() - Constructor for class ij.plugin.RGBStackConverter
 
RGBStackMerge - Class in ij.plugin
 
RGBStackMerge() - Constructor for class ij.plugin.RGBStackMerge
 
RGBStackSplitter - Class in ij.plugin.filter
Splits an RGB image or stack into three 8-bit grayscale images or stacks.
RGBStackSplitter() - Constructor for class ij.plugin.filter.RGBStackSplitter
 
rh - Variable in class ij.process.ImageStatistics
 
RIGHT_JUSTIFY - Static variable in class ij.process.ImageProcessor
Right justify text.
rLUT1 - Variable in class ij.process.ImageProcessor
 
rLUT2 - Variable in class ij.process.ImageProcessor
 
RODBARD - Static variable in class ij.measure.Calibration
 
RODBARD - Static variable in class ij.measure.CurveFitter
 
Roi - Class in ij.gui
A rectangular region of interest and superclass for the other ROI classes.
Roi(int, int, int, int) - Constructor for class ij.gui.Roi
Creates a new rectangular Roi.
Roi(Rectangle) - Constructor for class ij.gui.Roi
Creates a new rectangular Roi.
Roi(int, int, ImagePlus) - Constructor for class ij.gui.Roi
Starts the process of creating a user-defined rectangular Roi, where sx and sy are the starting screen coordinates.
Roi(int, int, int, int, ImagePlus) - Constructor for class ij.gui.Roi
Obsolete
ROI - Static variable in class ij.io.Opener
 
ROI_HEIGHT - Static variable in class ij.measure.ResultsTable
 
ROI_MANAGER - Static variable in interface ij.macro.MacroConstants
 
ROI_REQUIRED - Static variable in interface ij.plugin.filter.PlugInFilter
Set this flag if the filter requires an ROI.
ROI_WIDTH - Static variable in class ij.measure.ResultsTable
 
ROI_X - Static variable in class ij.measure.ResultsTable
 
ROI_Y - Static variable in class ij.measure.ResultsTable
 
ROIColor - Static variable in class ij.gui.Roi
 
ROICOLOR - Static variable in class ij.Prefs
 
RoiDecoder - Class in ij.io
Decodes an ImageJ, NIH Image or Scion Image ROI.
RoiDecoder(String) - Constructor for class ij.io.RoiDecoder
Constructs an RoiDecoder using a file path.
RoiDecoder(byte[], String) - Constructor for class ij.io.RoiDecoder
Constructs an RoiDecoder using a byte array.
RoiEncoder - Class in ij.io
Saves an ROI to a file or stream.
RoiEncoder(String) - Constructor for class ij.io.RoiEncoder
Creates an RoiEncoder using the specified path.
RoiEncoder(OutputStream) - Constructor for class ij.io.RoiEncoder
Creates an RoiEncoder using the specified OutputStream.
roiHeight - Variable in class ij.process.ImageProcessor
 
roiHeight - Variable in class ij.process.ImageStatistics
 
RoiManager - Class in ij.plugin.frame
This plugin implements the Analyze/Tools/ROI Manager command.
RoiManager() - Constructor for class ij.plugin.frame.RoiManager
 
RoiReader - Class in ij.plugin
Opens ImageJ, NIH Image and Scion Image for windows ROI outlines.
RoiReader() - Constructor for class ij.plugin.RoiReader
 
roiWidth - Variable in class ij.process.ImageProcessor
 
roiWidth - Variable in class ij.process.ImageStatistics
 
RoiWriter - Class in ij.plugin.filter
Saves the current ROI outline to a file.
RoiWriter() - Constructor for class ij.plugin.filter.RoiWriter
 
roiX - Variable in class ij.process.ImageProcessor
 
roiX - Variable in class ij.process.ImageStatistics
 
roiY - Variable in class ij.process.ImageProcessor
 
roiY - Variable in class ij.process.ImageStatistics
 
rotate(double) - Method in class ij.process.ByteProcessor
Rotates the image or ROI 'angle' degrees clockwise.
rotate(double) - Method in class ij.process.ColorProcessor
Rotates the image or ROI 'angle' degrees clockwise.
rotate(double) - Method in class ij.process.FloatProcessor
Rotates the image or ROI 'angle' degrees clockwise.
rotate(double) - Method in class ij.process.ImageProcessor
Rotates the image or selection 'angle' degrees clockwise.
rotate(double) - Method in class ij.process.ShortProcessor
Rotates the image or ROI 'angle' degrees clockwise.
rotateLeft() - Method in class ij.process.ImageProcessor
Rotates the entire image 90 degrees counter-clockwise.
rotateLeft() - Method in class ij.process.StackProcessor
 
Rotater - Class in skyview.geometry
 
Rotater(double[][]) - Constructor for class skyview.geometry.Rotater
Create a matrix from input data.
Rotater(String, double, double, double) - Constructor for class skyview.geometry.Rotater
Form a rotation from the Euler angles - three successive rotations about specified Cartesian axes
rotateRight() - Method in class ij.process.ImageProcessor
Rotates the entire image 90 degrees clockwise.
rotateRight() - Method in class ij.process.StackProcessor
 
Rotator - Class in ij.plugin.filter
This plugin implements the Image/Rotate command.
Rotator() - Constructor for class ij.plugin.filter.Rotator
 
ROUND - Static variable in interface ij.macro.MacroConstants
 
ROWS_PER_STRIP - Static variable in class ij.io.TiffDecoder
 
rt - Variable in class ij.plugin.filter.ParticleAnalyzer
 
run() - Method in class ij.Executer
 
run() - Method in class ij.gui.StackWindow
 
run(String) - Static method in class ij.IJ
Runs an ImageJ command.
run(String, String) - Static method in class ij.IJ
Runs an ImageJ command, with options that are passed to the GenericDialog and OpenDialog classes.
run(String) - Method in class ij.macro.Interpreter
Interprets the specified string.
run(String, String) - Method in class ij.macro.Interpreter
Runs the specified macro, passing it a string argument and returning a string value.
run(Program) - Method in class ij.macro.Interpreter
Interprets the specified tokenized macro file starting at location 0.
RUN - Static variable in interface ij.macro.MacroConstants
 
run() - Method in class ij.macro.MacroRunner
 
run(String) - Method in class ij.plugin.AboutBox
 
run(String) - Method in class ij.plugin.Animator
Set 'arg' to "set" to display a dialog that allows the user to specify the animation speed.
run(String) - Method in class ij.plugin.BMP_Reader
 
run(String) - Method in class ij.plugin.BMP_Writer
 
run(String) - Method in class ij.plugin.BrowserLauncher
Opens the specified URL (default is the ImageJ home page).
run(String) - Method in class ij.plugin.CanvasResizer
 
run(String) - Method in class ij.plugin.ClassChecker
 
run(String) - Method in class ij.plugin.ColorPicker
 
run(String) - Method in class ij.plugin.Colors
 
run(String) - Method in class ij.plugin.CommandLister
 
run(String) - Method in class ij.plugin.Compiler
 
run(String) - Method in class ij.plugin.ContrastEnhancer
 
run(String) - Method in class ij.plugin.ControlPanel
Creates a panel with the hierarchical tree structure of (some of the) ImageJ's commands according to the structure of the String argument (see below).
run(String) - Method in class ij.plugin.Converter
 
run(String) - Method in class ij.plugin.DICOM
 
run(String) - Method in class ij.plugin.DICOM_Sorter
 
run(String) - Method in class ij.plugin.Distribution
 
run(String) - Method in class ij.plugin.DragAndDrop
 
run(String) - Method in class ij.plugin.FFT
 
run(String) - Method in class ij.plugin.FFTMath
 
run(ImageProcessor) - Method in class ij.plugin.filter.Analyzer
 
run(ImageProcessor) - Method in class ij.plugin.filter.AVIWriter
 
run(ImageProcessor) - Method in class ij.plugin.filter.BackgroundSubtracter
 
run(ImageProcessor) - Method in class ij.plugin.filter.Benchmark
 
run(ImageProcessor) - Method in class ij.plugin.filter.Binary
 
run(ImageProcessor) - Method in class ij.plugin.filter.BinaryFiller
 
run(ImageProcessor) - Method in class ij.plugin.filter.CalibrationBar
 
run(ImageProcessor) - Method in class ij.plugin.filter.Calibrator
 
run(ImageProcessor) - Method in class ij.plugin.filter.Convolver
 
run(ImageProcessor) - Method in class ij.plugin.filter.Duplicater
 
run(ImageProcessor) - Method in class ij.plugin.filter.EDM
 
run(ImageProcessor) - Method in class ij.plugin.filter.FFTCustomFilter
 
run(ImageProcessor) - Method in class ij.plugin.filter.FFTFilter
 
run(ImageProcessor) - Method in class ij.plugin.filter.Filler
 
run(ImageProcessor) - Method in class ij.plugin.filter.Filters
 
run(ImageProcessor) - Method in class ij.plugin.filter.FractalBoxCounter
 
run(ImageProcessor) - Method in class ij.plugin.filter.GaussianBlur
 
run(ImageProcessor) - Method in class ij.plugin.filter.ImageMath
 
run(ImageProcessor) - Method in class ij.plugin.filter.ImageProperties
 
run(ImageProcessor) - Method in class ij.plugin.filter.Info
 
run(ImageProcessor) - Method in class ij.plugin.filter.LineGraphAnalyzer
 
run(ImageProcessor) - Method in class ij.plugin.filter.LutApplier
 
run(ImageProcessor) - Method in class ij.plugin.filter.LutViewer
 
run(ImageProcessor) - Method in class ij.plugin.filter.ParticleAnalyzer
 
run(ImageProcessor) - Method in interface ij.plugin.filter.PlugInFilter
Filters use this method to process the image.
run(ImageProcessor) - Method in class ij.plugin.filter.Printer
 
run(ImageProcessor) - Method in class ij.plugin.filter.Profiler
 
run(ImageProcessor) - Method in class ij.plugin.filter.Projector
 
run(ImageProcessor) - Method in class ij.plugin.filter.RankFilters
 
run(ImageProcessor) - Method in class ij.plugin.filter.Resizer
 
run(ImageProcessor) - Method in class ij.plugin.filter.RGBStackSplitter
 
run(ImageProcessor) - Method in class ij.plugin.filter.RoiWriter
 
run(ImageProcessor) - Method in class ij.plugin.filter.Rotator
 
run(ImageProcessor) - Method in class ij.plugin.filter.SaltAndPepper
 
run(ImageProcessor) - Method in class ij.plugin.filter.ScaleDialog
 
run(ImageProcessor) - Method in class ij.plugin.filter.Shadows
 
run(ImageProcessor) - Method in class ij.plugin.filter.SpecifyROI
Called by ImageJ to process the image
run(ImageProcessor) - Method in class ij.plugin.filter.Transformer
 
run(ImageProcessor) - Method in class ij.plugin.filter.UnsharpMask
 
run(ImageProcessor) - Method in class ij.plugin.filter.Writer
 
run(ImageProcessor) - Method in class ij.plugin.filter.XYCoordinates
 
run(ImageProcessor) - Method in class ij.plugin.filter.XYWriter
 
run(ImageProcessor) - Method in class ij.plugin.filter.ZAxisProfiler
 
run(String) - Method in class ij.plugin.FITS
 
run(String) - Method in class ij.plugin.FolderOpener
 
run(String) - Method in class ij.plugin.frame.ContrastAdjuster
 
run() - Method in class ij.plugin.frame.ContrastAdjuster
 
run() - Method in class ij.plugin.frame.LineWidthAdjuster
 
run(String) - Method in class ij.plugin.frame.PlugInFrame
 
run() - Method in class ij.plugin.frame.ThresholdAdjuster
 
run(String) - Method in class ij.plugin.GelAnalyzer
 
run(String) - Method in class ij.plugin.Histogram
 
run(String) - Method in class ij.plugin.Hotkeys
 
run(String) - Method in class ij.plugin.ImageCalculator
 
run(String) - Method in class ij.plugin.Installer
 
run(String) - Method in class ij.plugin.JavaProperties
 
run(String) - Method in class ij.plugin.JpegWriter
 
run(String) - Method in class ij.plugin.LUT_Editor
 
run(String) - Method in class ij.plugin.LutLoader
If 'arg'="", displays a file open dialog and opens the specified LUT.
run(String) - Method in class ij.plugin.Macro_Runner
Opens and runs the specified macro file on the current thread.
run(String) - Method in class ij.plugin.MacroInstaller
 
run(String) - Method in class ij.plugin.MeasurementsWriter
 
run(String) - Method in class ij.plugin.Memory
 
run(String) - Method in class ij.plugin.MemoryMonitor
 
run(String) - Method in class ij.plugin.MemoryTest
 
run(String) - Method in class ij.plugin.MontageMaker
 
run(String) - Method in class ij.plugin.NewPlugin
 
run(String) - Method in class ij.plugin.NextImageOpener
 
run(String) - Method in class ij.plugin.Options
 
run(String) - Method in class ij.plugin.PGM_Reader
 
run(String) - Method in interface ij.plugin.PlugIn
This method is called when the plugin is loaded.
run(String) - Method in class ij.plugin.PNG_Writer
 
run(String) - Method in class ij.plugin.PNM_Writer
 
run(String) - Method in class ij.plugin.Raw
 
run(String) - Method in class ij.plugin.RGBStackConverter
 
run(String) - Method in class ij.plugin.RGBStackMerge
Merges one, two or three 8-bit or RGB stacks into a single RGB stack.
run(String) - Method in class ij.plugin.RoiReader
 
run(String) - Method in class ij.plugin.ScaleBar
 
run(String) - Method in class ij.plugin.Scaler
 
run(String) - Method in class ij.plugin.ScreenGrabber
 
run(String) - Method in class ij.plugin.Selection
 
run(String) - Method in class ij.plugin.SimpleCommands
 
run(String) - Method in class ij.plugin.Slicer
 
run(String) - Method in class ij.plugin.StackEditor
'arg' must be "add", "delete" or "convert".
run(String) - Method in class ij.plugin.StackWriter
 
run(String) - Method in class ij.plugin.SurfacePlotter
 
run(String) - Method in class ij.plugin.TextFileReader
 
run(String) - Method in class ij.plugin.TextReader
 
run(String) - Method in class ij.plugin.TextWriter
 
run(String) - Method in class ij.plugin.ThreadLister
 
run(String) - Method in class ij.plugin.Thresholder
 
run(String) - Method in class ij.plugin.Timer
 
run(String) - Method in class ij.plugin.URLOpener
If 'urlOrName' is a URL, opens the image at that URL.
run(String) - Method in class ij.plugin.WindowOrganizer
 
run(String) - Method in class ij.plugin.Zip_Reader
 
run(String) - Method in class ij.plugin.Zoom
'arg' must be "in", "out", "100%" or "orig".
run(String) - Method in class ij.plugin.ZProjector
 
run() - Method in class ij.RecentOpener
Open the file and move the path to top of the submenu.
run() - Method in class ij.SocketListener
 
run(String[]) - Method in class skyview.executive.Imager
Run an image with a given set of arguments.
run() - Method in class skyview.executive.Imager
Run the image
run() - Method in class skyview.request.SourceCoordinates
send query to resolve user input
run() - Method in class skyview.vo.ConeQuerier
Run the query
RUN_MACRO - Static variable in interface ij.macro.MacroConstants
 
runCommand(String, ImagePlus) - Method in class ij.Executer
 
runCommand(String) - Method in class ij.plugin.frame.RoiManager
Executes the ROI Manager "Add", "Add & Draw", "Delete", "Measure", "Draw", "Combine" command.
runCommand(String, String) - Method in class ij.plugin.frame.RoiManager
Executes the ROI Manager "Open" or "Save" command.
runFilterPlugIn(Object, String, String) - Method in class ij.ImageJ
 
runImageCommand(String, ImagePlus) - Method in class ij.Executer
Run commands that process images.
runMacro(String) - Static method in class ij.IJ
Runs the macro contained in the string macro.
runMacro(String, String) - Static method in class ij.IJ
Runs the macro contained in the string macro.
runMacro(Program, int, String) - Method in class ij.macro.Interpreter
Interprets the specified tokenized macro starting at the specified location.
runMacro(String, String) - Method in class ij.plugin.Macro_Runner
Opens and runs the specified macro on the current thread.
runMacro(String) - Method in class ij.plugin.MacroInstaller
 
runMacroFile(String, String) - Static method in class ij.IJ
Runs the specified macro file.
runMacroFile(String) - Static method in class ij.IJ
Runs the specified macro file.
runMacroFile(String, String) - Method in class ij.plugin.Macro_Runner
Opens and runs the specified macro file on the current thread.
runMacroFromIJJar(String, String) - Method in class ij.plugin.Macro_Runner
 
runMacroTool(String) - Method in class ij.plugin.MacroInstaller
 
running - Variable in class ij.gui.ImageWindow
This variable is set false if presses the escape key or closes the window.
running2 - Variable in class ij.gui.ImageWindow
This variable is set false if the user clicks in this window, presses the escape key, or closes the window.
runPlugIn(String, String) - Static method in class ij.IJ
Runs the specified plugin and returns a reference to it.
runUserPlugIn(String, String, String, boolean) - Method in class ij.ImageJ
 
rw - Variable in class ij.process.ImageStatistics
 
rx - Variable in class ij.process.ImageStatistics
 
ry - Variable in class ij.process.ImageStatistics
 

S

s - Variable in class skyview.executive.Imager
The Scaler object for the output image.
s2ints(String) - Method in class ij.plugin.ControlPanel
Breaks the specified string into an array of ints.
s2ints(String) - Method in class ij.plugin.filter.FractalBoxCounter
Breaks the specified string into an array of ints.
SaltAndPepper - Class in ij.plugin.filter
Implements ImageJ's Process/Noise/Salt and Pepper command.
SaltAndPepper() - Constructor for class ij.plugin.filter.SaltAndPepper
 
samp - Variable in class skyview.executive.Imager
The sampler object used to create the output image.
sample(Image) - Method in class skyview.geometry.DepthSampler
Sample an image according the the input specification
sample(int) - Method in class skyview.geometry.sampler.ClipSampler
 
sample(int) - Method in class skyview.geometry.sampler.ComboSampler
Use the primary unless we get a NaN
sample(int) - Method in class skyview.geometry.sampler.LanczosSampler
Sample a single pixel
sample(int) - Method in class skyview.geometry.sampler.LISampler
Sample at a specified pixel
sample(int) - Method in class skyview.geometry.sampler.NNSampler
Sample at a specified pixel
sample(int) - Method in class skyview.geometry.Sampler
Find the value in the input data to put in the output data.
sample(int) - Method in class skyview.geometry.sampler.SplineSampler
 
SAMPLE_FORMAT - Static variable in class ij.io.TiffDecoder
 
samplePixel(int, double[], double[]) - Method in class skyview.geometry.sampler.ClipSampler
Sample a single map pixel.
Sampler - Class in skyview.geometry
 
Sampler() - Constructor for class skyview.geometry.Sampler
 
SAMPLES_PER_PIXEL - Static variable in class ij.io.TiffDecoder
 
SansSerif12 - Static variable in class ij.ImageJ
SansSerif, 12-point, plain font.
save - Variable in class ij.gui.HistogramWindow
 
save(String) - Static method in class ij.IJ
Saves an image, lookup table, selection or text window to the specified file path.
save() - Method in class ij.io.FileSaver
Resaves the image.
SAVE - Static variable in interface ij.macro.MacroConstants
 
save(PrintWriter) - Method in class ij.text.TextPanel
Writes all the text in this TextPanel to a file.
save() - Static method in class skyview.executive.Settings
Save the current state of the settings for a later restoration
SAVE_AS - Static variable in interface ij.macro.MacroConstants
 
SAVE_AS_MENU - Static variable in class ij.Menus
 
SAVE_SETTINGS - Static variable in interface ij.macro.MacroConstants
 
saveAs(String, String) - Static method in class ij.IJ
 
saveAs(String) - Static method in class ij.Macro
 
saveAs(String) - Method in class ij.text.TextPanel
Saves all the text in this TextPanel to a file.
saveAsBmp() - Method in class ij.io.FileSaver
Save the image in BMP format using a save file dialog.
saveAsBmp(String) - Method in class ij.io.FileSaver
Save the image in BMP format using the specified path.
saveAsGif() - Method in class ij.io.FileSaver
Save the image in GIF format using a save file dialog.
saveAsGif(String) - Method in class ij.io.FileSaver
Save the image in Gif format using the specified path.
saveAsJpeg() - Method in class ij.io.FileSaver
Save the image in JPEG format using a save file dialog.
saveAsJpeg(String) - Method in class ij.io.FileSaver
Save the image in JPEG format using the specified path.
saveAsLut() - Method in class ij.io.FileSaver
Save the current LUT using a save file dialog.
saveAsLut(String) - Method in class ij.io.FileSaver
Save the current LUT using the specified path.
saveAsPgm() - Method in class ij.io.FileSaver
Saves grayscale images in PGM (portable graymap) format and RGB images in PPM (portable pixmap) format, using a save file dialog.
saveAsPgm(String) - Method in class ij.io.FileSaver
Saves grayscale images in PGM (portable graymap) format and RGB images in PPM (portable pixmap) format, using the specified path.
saveAsPng() - Method in class ij.io.FileSaver
Save the image in PNG format using a save file dialog.
saveAsPng(String) - Method in class ij.io.FileSaver
Save the image in PNG format using the specified path.
saveAsRaw() - Method in class ij.io.FileSaver
Save the image or stack as raw data using a save file dialog.
saveAsRaw(String) - Method in class ij.io.FileSaver
Save the image as raw data using the specified path.
saveAsRawStack(String) - Method in class ij.io.FileSaver
Save the stack as raw data using the specified path.
saveAsText() - Method in class ij.io.FileSaver
Save the image as tab-delimited text using a save file dialog.
saveAsText(String) - Method in class ij.io.FileSaver
Save the image as tab-delimited text using the specified path.
saveAsTiff() - Method in class ij.io.FileSaver
Save the image or stack in TIFF format using a save file dialog.
saveAsTiff(String) - Method in class ij.io.FileSaver
Save the image in TIFF format using the specified path.
saveAsTiffStack(String) - Method in class ij.io.FileSaver
Save the stack as a multi-image TIFF using the specified path.
saveAsZip() - Method in class ij.io.FileSaver
Uses a save file dialog to save the image or stack as a TIFF in a ZIP archive.
saveAsZip(String) - Method in class ij.io.FileSaver
Save the image or stack in TIFF/ZIP format using the specified path.
saveBitmap(String, Image, int, int) - Method in class ij.plugin.BMP_Writer
 
SaveChangesDialog - Class in ij.gui
A modal dialog box with a one line message and "Don't Save", "Cancel" and "Save" buttons.
SaveChangesDialog(Frame, String) - Constructor for class ij.gui.SaveChangesDialog
 
saveCommand() - Static method in class ij.plugin.frame.Recorder
Writes the current command and options to the Recorder window.
SaveDialog - Class in ij.io
This class displays a dialog window from which the user can save a file.
SaveDialog(String, String, String) - Constructor for class ij.io.SaveDialog
Displays a file save dialog with 'title' as the title, 'defaultName' as the initial file name, and 'extension' (e.g.
SaveDialog(String, String, String, String) - Constructor for class ij.io.SaveDialog
Displays a file save dialog, using the specified default directory and file name and extension.
saveGlobals(Program) - Method in class ij.macro.Interpreter
Saves global variablesk.
saveImageDescription(byte[], FileInfo) - Method in class ij.io.TiffDecoder
Save the image description in the specified FileInfo.
savePreferences(Properties) - Static method in class ij.gui.NewImage
Called when ImageJ quits.
savePreferences(Properties) - Static method in class ij.gui.PlotWindow
Called once when ImageJ quits.
savePreferences(Properties) - Method in class ij.ImageJ
Called once when ImageJ quits.
savePreferences(Properties) - Static method in class ij.io.ImportDialog
Called once when ImageJ quits.
savePreferences(Properties) - Static method in class ij.Menus
Called once when ImageJ quits.
savePreferences(Properties) - Static method in class ij.plugin.filter.Analyzer
Called once when ImageJ quits.
savePreferences(Properties) - Static method in class ij.plugin.filter.ParticleAnalyzer
Called once when ImageJ quits.
savePreferences(Properties) - Static method in class ij.plugin.GelAnalyzer
Called once when ImageJ quits.
savePrefs(Properties, String) - Static method in class ij.Prefs
 
savePressed() - Method in class ij.gui.SaveChangesDialog
Returns true if the user dismissed dialog by pressing "Save".
saveResults(ImageStatistics, Roi) - Method in class ij.plugin.filter.Analyzer
Saves the measurements specified in the "Set Measurements" dialog, or by calling setMeasurments(), in the system results table.
saveResults(ImageStatistics, Roi) - Method in class ij.plugin.filter.ParticleAnalyzer
Saves statistics for one particle in a results table.
saveRoi() - Method in class ij.ImagePlus
 
saveRoi(ImagePlus) - Method in class ij.plugin.filter.RoiWriter
 
saveXValues - Static variable in class ij.gui.PlotWindow
Save x-values only.
saveXYCoordinates(ImagePlus) - Method in class ij.plugin.filter.XYWriter
 
scale(double, double) - Method in class ij.process.ByteProcessor
Scales the image or selection using the specified scale factors.
scale(double, double) - Method in class ij.process.ColorProcessor
Scales the image or selection using the specified scale factors.
scale(double, double) - Method in class ij.process.FloatProcessor
Scales the image or selection using the specified scale factors.
scale(double, double) - Method in class ij.process.ImageProcessor
Scales the image by the specified factors.
scale(double, double) - Method in class ij.process.ShortProcessor
Scales the image or selection using the specified scale factors.
scale(double, double) - Method in class ij.process.StackProcessor
 
scale(double, double, double) - Method in class ij.process.StackProcessor
 
scale(double) - Method in class skyview.data.AngScale
Get an appropriate scaling for this coordinate.
scale() - Method in class skyview.geometry.Scaler
What is the scale of this transformation? This is defined as the ratio of the lengths between a unit transformation on input.
scale(double) - Method in class skyview.util.HistScaler
 
scale(double) - Method in class skyview.util.LinearScaler
Scale a single value
scale(double) - Method in class skyview.util.LogScaler
Scale an value.
scale(double) - Method in class skyview.util.Scaler
Scale a single number.
scale(double) - Method in class skyview.util.SqrtScaler
Scale an value.
scaleArray(Object) - Method in class skyview.util.Scaler
Scale an array assumed to be a double array of arbitrary dimensionality.
ScaleBar - Class in ij.plugin
This plugin implements the Analyze/Tools/Draw Scale Bar command.
ScaleBar() - Constructor for class ij.plugin.ScaleBar
 
scaled() - Method in class ij.measure.Calibration
Returns true if this image is spatially calibrated.
ScaledBorder - Class in skyview.geometry.imagefinder
This class works almost exactly like the BorderImageFinder, however when calculating the distance from the edge of the image, the distance is scaled to diagonal dimension of the image.
ScaledBorder() - Constructor for class skyview.geometry.imagefinder.ScaledBorder
 
ScaleDialog - Class in ij.plugin.filter
Implements the Analyze/Set Scale command.
ScaleDialog() - Constructor for class ij.plugin.filter.ScaleDialog
 
Scaler - Class in ij.plugin
This plugin implements the Edit/Scale command.
Scaler() - Constructor for class ij.plugin.Scaler
 
Scaler - Class in skyview.geometry
This class does 2-D scalings, rotations and linear transformations.
Scaler(double, double, double, double, double, double) - Constructor for class skyview.geometry.Scaler
Create a scaler where y0 = x0 + a00*x0 + a01*x1, y1 = x0+a10*x0+a11*x1.
Scaler - Class in skyview.util
Scale an object.
Scaler() - Constructor for class skyview.util.Scaler
Provide default scaler.
Scaler(double, double, int, int) - Constructor for class skyview.util.Scaler
Provide a scaler with a specified scaling range to a specified range of bytes.
sCalibrated - Variable in class ij.ImagePlus
Obsolete.
scaling(double, double) - Method in class skyview.data.AngScale
Get the desired starting values and scaling interval.
SCREEN_HEIGHT - Static variable in interface ij.macro.MacroConstants
 
SCREEN_WIDTH - Static variable in interface ij.macro.MacroConstants
 
ScreenGrabber - Class in ij.plugin
Implements the Plugins/Utilities/Capture Screen command.
ScreenGrabber() - Constructor for class ij.plugin.ScreenGrabber
 
screenX(int) - Method in class ij.gui.ImageCanvas
Converts an offscreen x-coordinate to a screen x-coordinate.
screenXD(double) - Method in class ij.gui.ImageCanvas
Converts a floating-point offscreen x-coordinate to a screen x-coordinate.
screenY(int) - Method in class ij.gui.ImageCanvas
Converts an offscreen y-coordinate to a screen y-coordinate.
screenYD(double) - Method in class ij.gui.ImageCanvas
Converts a floating-point offscreen x-coordinate to a screen x-coordinate.
scroll(int, int) - Method in class ij.gui.ImageCanvas
 
SD_METHOD - Static variable in class ij.plugin.ZProjector
 
seek(int) - Method in class ij.io.RandomAccessStream
 
seek(long) - Method in class nom.tam.util.BufferedFile
Move to the current offset from the beginning of the file.
seek(long) - Method in interface nom.tam.util.RandomAccess
Move to a specified location in the stream.
SELECT - Static variable in interface ij.macro.MacroConstants
 
select(int) - Method in class ij.plugin.frame.RoiManager
 
SELECT_IMAGE - Static variable in interface ij.macro.MacroConstants
 
selectAll() - Method in class ij.text.TextPanel
Selects all the lines in this TextPanel.
Selection - Class in ij.plugin
This plugin implements the commands in the Edit/Section submenu.
Selection() - Constructor for class ij.plugin.Selection
 
SELECTION_NAME - Static variable in interface ij.macro.MacroConstants
 
SELECTION_TYPE - Static variable in interface ij.macro.MacroConstants
 
selectWindow(int) - Static method in class ij.IJ
For IDs less than zero, activates the image with the specified ID.
selectWindow(String) - Static method in class ij.IJ
Activates the window with the specified title.
separator - Static variable in class ij.Prefs
file.separator system property
set(String, String) - Static method in class ij.Prefs
Saves the value of the string text in the preferences file using the keyword key.
set(String, double) - Static method in class ij.Prefs
Saves value in the preferences file using the keyword key.
set(String, boolean) - Static method in class ij.Prefs
Saves the boolean variable value in the preferences file using the keyword key.
set(int, int, int) - Method in class ij.process.ByteProcessor
 
SET_AUTO_THRESHOLD - Static variable in interface ij.macro.MacroConstants
 
SET_BACKGROUND - Static variable in interface ij.macro.MacroConstants
 
SET_BATCH_MODE - Static variable in interface ij.macro.MacroConstants
 
SET_COLOR - Static variable in interface ij.macro.MacroConstants
 
SET_FONT - Static variable in interface ij.macro.MacroConstants
 
SET_FOREGROUND - Static variable in interface ij.macro.MacroConstants
 
SET_JUSTIFICATION - Static variable in interface ij.macro.MacroConstants
 
SET_KEY_DOWN - Static variable in interface ij.macro.MacroConstants
 
SET_LINE_WIDTH - Static variable in interface ij.macro.MacroConstants
 
SET_LOCATION - Static variable in interface ij.macro.MacroConstants
 
SET_LUT - Static variable in interface ij.macro.MacroConstants
 
SET_METADATA - Static variable in interface ij.macro.MacroConstants
 
SET_MIN_MAX - Static variable in interface ij.macro.MacroConstants
 
SET_PASTE_MODE - Static variable in interface ij.macro.MacroConstants
 
SET_PIXEL - Static variable in interface ij.macro.MacroConstants
 
SET_RESULT - Static variable in interface ij.macro.MacroConstants
 
SET_RGB_WEIGHTS - Static variable in interface ij.macro.MacroConstants
 
SET_SELECTION_NAME - Static variable in interface ij.macro.MacroConstants
 
SET_SLICE - Static variable in interface ij.macro.MacroConstants
 
SET_THRESHOLD - Static variable in interface ij.macro.MacroConstants
 
SET_TOOL - Static variable in interface ij.macro.MacroConstants
 
SET_VOXEL_SIZE - Static variable in interface ij.macro.MacroConstants
 
SET_Z_COORDINATE - Static variable in interface ij.macro.MacroConstants
 
setActivated() - Method in class ij.ImagePlus
Called by ImageWindow.windowActivated().
setAlign(boolean) - Method in class nom.tam.util.ByteFormatter
Set the alignment flag.
setAllCoords(String, String, double, double, String) - Method in class skyview.request.SourceCoordinates
Update center coordinates or object in decimal and HHMMSS forms.
setAntialiased(Graphics, boolean) - Static method in class ij.util.Java2
 
setAntialiasedText(boolean) - Method in class ij.process.ImageProcessor
Specifies whether or not text is drawn using antialiasing.
setAntialiasedText(Graphics, boolean) - Static method in class ij.util.Java2
 
setBackgroundColor(Color) - Static method in class ij.gui.Toolbar
 
setBackgroundColor(int, int, int) - Static method in class ij.IJ
Sets the background color.
setBackgroundValue(double) - Method in class ij.process.ByteProcessor
Sets the background fill value, where 0<=value<=255.
setBackgroundValue(double) - Method in class ij.process.ColorProcessor
Sets the background fill value, where value is interpreted as an RGB int.
setBackgroundValue(double) - Method in class ij.process.FloatProcessor
Does nothing.
setBackgroundValue(double) - Method in class ij.process.ImageProcessor
Sets the background fill value used by the rotate() and scale() methods.
setBackgroundValue(double) - Method in class ij.process.ShortProcessor
Does nothing.
setBilinearInterpolation(Graphics, boolean) - Static method in class ij.util.Java2
 
setBitpix(int) - Method in class nom.tam.fits.Header
Set the BITPIX value for the header.
setBounds(int[]) - Method in class skyview.geometry.sampler.ComboSampler
Set the bounds of the output image that may be asked for.
setBounds(int[]) - Method in class skyview.geometry.Sampler
Set the bounds of the output image that may be asked for.
setBrightness(FloatProcessor) - Method in class ij.process.ColorProcessor
Updates the brightness using the pixels in the specified FloatProcessor).
setBuffer(byte[]) - Method in class nom.tam.util.ByteParser
Set the buffer for the parser
setCalibration(Calibration) - Method in class ij.ImagePlus
Sets this image's calibration.
setCalibrationTable(float[]) - Method in class ij.process.ImageProcessor
Set a lookup table used by getPixelValue(), getLine() and convertToFloat() to calibrate pixel values.
setChecksum(BasicHDU) - Static method in class nom.tam.fits.Fits
Add or update the CHECKSUM keyword.
setChecksum() - Method in class nom.tam.fits.Fits
Add or Modify the CHECKSUM keyword in all headers.
setClipRect(Rectangle) - Method in class ij.process.ImageProcessor
Updates the clipping rectangle used by lineTo(), drawLine(), drawDot() and drawPixel().
setColor(Color) - Method in class ij.gui.Plot
Changes the drawing color.
setColor(Color) - Method in class ij.gui.PlotWindow
Changes the drawing color.
setColor(Color) - Static method in class ij.gui.Roi
Sets the color used for ROI outline to the specified value.
setColor(Color) - Method in class ij.gui.Toolbar
Obsolete.
setColor(Color) - Method in class ij.ImagePlus
Sets current foreground color.
setColor(Color) - Method in class ij.process.ByteProcessor
Sets the foreground drawing color.
setColor(Color) - Method in class ij.process.ColorProcessor
Sets the foreground color.
setColor(Color) - Method in class ij.process.FloatProcessor
Sets the foreground fill/draw color.
setColor(Color) - Method in class ij.process.ImageProcessor
Sets the default fill/draw value to the pixel value closest to the specified color.
setColor(int) - Method in class ij.process.ImageProcessor
Obsolete (use setValue)
setColor(Color) - Method in class ij.process.ShortProcessor
Sets the foreground fill/draw color.
setColorModel(ColorModel) - Method in class ij.ImageStack
Assigns a new color model to this stack.
setColorModel(ColorModel) - Method in class ij.process.ImageProcessor
Sets the color model.
setColumn(int, Object) - Method in class nom.tam.fits.AsciiTable
Replace a column with new data.
setColumn(int, Object) - Method in class nom.tam.fits.BinaryTable
Replace a column in the table.
setColumn(int, Object) - Method in interface nom.tam.fits.TableData
 
setColumn(String, Object) - Method in class nom.tam.fits.TableHDU
 
setColumn(int, Object) - Method in class nom.tam.fits.TableHDU
 
setColumn(int, Object) - Method in class nom.tam.util.ColumnTable
Set the values in a particular column.
setColumn(int, Object) - Method in interface nom.tam.util.DataTable
 
setColumnHeadings(String) - Static method in class ij.IJ
Clears the "Results" window and sets the column headings to those in the tab-delimited 'headings' String.
setColumnHeadings(String) - Method in class ij.text.TextPanel
Clears this TextPanel and sets the column headings to those in the tab-delimited 'headings' String.
setColumnName(int, String, String) - Method in class nom.tam.fits.TableHDU
 
setCommand(String) - Static method in class ij.plugin.frame.Recorder
Starts recording a command.
setCurrentColumn(int) - Method in class nom.tam.fits.TableHDU
 
setCurrentWindow(ImageWindow) - Static method in class ij.WindowManager
Makes the specified image active.
setCursor(int, int, int, int) - Method in class ij.gui.ImageCanvas
Sets the cursor based on the current tool and cursor location.
setData(int, double) - Method in class skyview.survey.DSSImage
Set the Data associated with the image.
setData(int, double) - Method in class skyview.survey.Image
Set the Data associated with the image.
setData(int, double) - Method in class skyview.survey.ProxyImage
Set the Data associated with the image.
setDataArray(double[]) - Method in class skyview.survey.DSSImage
Set the data array
setDataArray(double[]) - Method in class skyview.survey.Image
Set the data array
setDataArray(double[]) - Method in class skyview.survey.ProxyImage
Set the data array
setDefaultDirectory(String) - Static method in class ij.io.OpenDialog
Sets the current working directory.
setDefaultDirectory(String) - Static method in class ij.plugin.frame.Editor
 
setDimensions(int, int, int) - Method in class ij.ImagePlus
Sets the 3rd, 4th and 5th dimensions, where nChannels*nSlices*nFrames must be the same as the stack size.
setDistorter(Distorter) - Method in class skyview.geometry.Projection
 
setDoScaling(boolean) - Static method in class ij.process.ImageConverter
Set true to scale to 0-255 when converting short to byte or float to byte and to 0-65535 when converting float to short.
setDrawingColor(int, int, boolean) - Method in class ij.gui.ImageCanvas
 
setDrawingSize(int, int) - Method in class ij.gui.ImageCanvas
 
setDrizzle(double) - Method in class skyview.geometry.sampler.ClipSampler
Set the drizzle factor for sampling
setElement(int, int, Object) - Method in class nom.tam.fits.AsciiTable
Modify an element in the table
setElement(int, int, Object) - Method in class nom.tam.fits.BinaryTable
Replace a single element within the table.
setElement(int, int, Object) - Method in interface nom.tam.fits.TableData
 
setElement(int, int, Object) - Method in class nom.tam.fits.TableHDU
 
setElement(int, int, Object) - Method in class nom.tam.util.ColumnTable
Modify an element of the table.
setElement(int, int, Object) - Method in interface nom.tam.util.DataTable
 
setEntriesUsed(int) - Method in class skyview.vo.ConeQuerier
 
setExitWhenQuiting(boolean) - Method in class ij.ImageJ
 
setFactory(ImageFactory) - Static method in class skyview.survey.ProxyImage
Set the factory that is used to create the real images
setFileInfo(FileInfo) - Method in class ij.ImagePlus
Saves this image's FileInfo so it can be later retieved using getOriginalFileInfo().
setFileName(String) - Method in class ij.plugin.MacroInstaller
 
setFileOffset(Object) - Method in class nom.tam.fits.Data
Set the fields needed for a re-read
setFillFields(boolean) - Method in class nom.tam.util.ByteParser
Do we require a field to completely fill up the specified length (with optional leading and trailing white space.
setFlattenedColumn(int, Object) - Method in class nom.tam.fits.BinaryTable
Set a column with the data aleady flattened.
setFont(Font) - Method in class ij.gui.MultiLineLabel
 
setFont(String, int, int) - Static method in class ij.gui.TextRoi
Sets the font face, size and style.
setFont(Font) - Method in class ij.plugin.frame.Editor
 
setFont(Font) - Method in class ij.process.ImageProcessor
Sets the font used by drawString().
setFont(Font) - Method in class ij.text.TextPanel
 
setFont(Font) - Method in class ij.text.TextWindow
Set the font that will be used to display the text.
setForegroundColor(Color) - Static method in class ij.gui.Toolbar
 
setForegroundColor(int, int, int) - Static method in class ij.IJ
Sets the foreground color.
setFunction(int, double[], String) - Method in class ij.measure.Calibration
Sets the calibration function, coefficient table and unit (e.g.
setFunction(int, double[], String, boolean) - Method in class ij.measure.Calibration
 
setGlobalCalibration(Calibration) - Method in class ij.ImagePlus
Sets the system-wide calibration.
setHeading(int, String) - Method in class ij.measure.ResultsTable
Changes the heading of the given column.
setHistogramRange(double, double) - Method in class ij.process.ImageProcessor
Set the range used for histograms of float images.
setHistogramSize(int) - Method in class ij.process.ImageProcessor
Set the number of bins to be used for histograms of float images.
setHSB(byte[], byte[], byte[]) - Method in class ij.process.ColorProcessor
Sets the current pixels from 3 byte arrays (hue, saturation and brightness).
setIgnoreFlush(boolean) - Method in class ij.ImagePlus
Set ignoreFlush true to not have the pixel data set to null when the window is closed.
setImage(ImagePlus) - Method in class ij.gui.Roi
 
setImage(Image) - Method in class ij.ImagePlus
Replaces the AWT image, if any, with the one specified.
setImage(ImagePlus) - Method in class ij.measure.Calibration
Disables the density calibation if the specified image has a differenent bit depth.
setImage(ImagePlus) - Method in class ij.plugin.ZProjector
Explicitly set image to be projected.
setImage(Image) - Method in class skyview.data.Gridder
Change the image
setImageUpdated() - Method in class ij.gui.ImageCanvas
ImagePlus.updateAndDraw calls this method to get paint to update the image from the ImageProcessor.
setInput(Image) - Method in class skyview.geometry.sampler.ComboSampler
Set the input image for the sampling
setInput(Image) - Method in class skyview.geometry.Sampler
Set the input image for the sampling
setInput(Image) - Method in class skyview.geometry.sampler.SplineSampler
Construct a sample of a given degree.
setInputEvent(InputEvent) - Static method in class ij.IJ
 
setInputStream(InputStream) - Method in class skyview.survey.HDecompressor
Set the input stream for an Hdecomp object.
setIntensive(boolean) - Method in class skyview.geometry.sampler.ClipSampler
 
setInterpolate(boolean) - Method in class ij.process.ImageProcessor
Setting 'interpolate' true causes scale(), resize(), rotate() and getLine() to do bilinear interpolation.
setJustification(int) - Method in class ij.gui.Plot
Sets the justification used by addLabel(), where justification is ImageProcessor.LEFT, ImageProcessor.CENTER or ImageProcessor.RIGHT.
setJustification(int) - Method in class ij.process.ImageProcessor
Sets the justification used by drawString(), where justification is CENTER_JUSTIFY, RIGHT_JUSTIFY or LEFT_JUSTIFY.
setKey(Object) - Method in interface nom.tam.util.Cursor
Point the list at a particular element.
setKeyDown(int) - Static method in class ij.IJ
 
setKeyUp(int) - Static method in class ij.IJ
 
setLabel(String, int) - Method in class ij.measure.ResultsTable
Adds a label to the beginning of the specified row, or updates an existing lable, where 0<=rowsetLength(long) - Method in class nom.tam.util.BufferedFile
Set the length of the file.
setLimits(double, double, double, double) - Method in class ij.gui.Plot
Sets the x-axis and y-axis range.
setLimits(double, double, double, double) - Method in class ij.gui.PlotWindow
Sets the x-axis and y-axis range.
setLineWidth(int) - Method in class ij.gui.Plot
Changes the line width.
setLineWidth(int) - Method in class ij.gui.PlotWindow
Changes the line width.
setLineWidth(int) - Method in class ij.process.ImageProcessor
Sets the line width used by lineTo() and drawDot().
setLocation(int, int) - Method in class ij.gui.Roi
 
setLutAnimation(boolean) - Method in class ij.process.ImageProcessor
For 16 and 32 bit processors, set 'lutAnimation' true to have createImage() use the cached 8-bit version of the image.
setMagnification(double) - Method in class ij.gui.ImageCanvas
 
setMask(ImageProcessor) - Method in class ij.process.ImageProcessor
Defines a byte mask that limits processing to an irregular ROI.
setMaxIterations(int) - Method in class ij.measure.CurveFitter
Set maximum number of iterations allowed
setMaxVal(double) - Method in class skyview.util.Scaler
 
setMeasurements(int) - Static method in class ij.plugin.filter.Analyzer
 
setMethod(int) - Method in class ij.plugin.ZProjector
 
setMinAndMax(double, double) - Static method in class ij.gui.ProfilePlot
Sets the y-axis min and max.
setMinAndMax(double, double) - Static method in class ij.IJ
Sets the minimum and maximum displayed pixel values.
setMinAndMax(double, double) - Method in class ij.process.ByteProcessor
Maps the entries in this image's LUT from min-max to 0-255.
setMinAndMax(double, double) - Method in class ij.process.ColorProcessor
Uses a table look-up to map the pixels in this image from min-max to 0-255.
setMinAndMax(double, double, int) - Method in class ij.process.ColorProcessor
 
setMinAndMax(double, double) - Method in class ij.process.FloatProcessor
Sets the min and max variables that control how real pixel values are mapped to 0-255 screen values.
setMinAndMax(double, double) - Method in class ij.process.ImageProcessor
This image will be displayed by mapping pixel values in the range min-max to screen values in the range 0-255.
setMinAndMax(double, double) - Method in class ij.process.ShortProcessor
Sets the min and max variables that control how real pixel values are mapped to 0-255 screen values.
setMinMax(double[]) - Method in class skyview.util.HistScaler
 
setMinMax(double[]) - Method in class skyview.util.Scaler
 
setMinVal(double) - Method in class skyview.util.Scaler
 
setName(String) - Method in class ij.gui.Roi
Sets the name of this ROI.
setName(String) - Method in class skyview.survey.Image
set the name of the image
setName(String) - Method in class skyview.survey.ProxyImage
set the name of the image
setNaxes(int) - Method in class nom.tam.fits.Header
Set the value of the NAXIS keyword
setNaxis(int, int) - Method in class nom.tam.fits.Header
Set the dimension for a given axis.
setNormalize(boolean) - Method in class ij.plugin.filter.Convolver
 
setNull(int, int, boolean) - Method in class nom.tam.fits.AsciiTable
Mark (or unmark) an element as null.
setNull(int, int, boolean) - Method in class nom.tam.fits.AsciiTableHDU
Mark an entry as null.
setNullString(int, String) - Method in class nom.tam.fits.AsciiTableHDU
Set the null string for a column
setOffset(int) - Method in class nom.tam.util.ByteParser
Set the offset into the array.
setOptions(String) - Static method in class ij.Macro
 
setOrder(int) - Method in class skyview.geometry.sampler.LanczosSampler
Create a Lanczos sample of specified width sampler The data will be set later.
setOrder(int) - Method in class skyview.geometry.Sampler
Set the order of the classifier.
setOrder(int) - Method in class skyview.geometry.sampler.SplineSampler
Set the order
setOutput(Image) - Method in class skyview.geometry.sampler.ClipSampler
 
setOutput(Image) - Method in class skyview.geometry.sampler.ComboSampler
Set the output image for the sampling
setOutput(Image) - Method in class skyview.geometry.Sampler
Set the output image for the sampling
setOutput(PrintStream) - Method in class skyview.vo.ConeQuerier
 
setPasteMode(int) - Static method in class ij.gui.Roi
Sets the Paste transfer mode.
setPasteMode(String) - Static method in class ij.IJ
Sets the transfer mode used by the Edit/Paste command, where mode is "Copy", "Blend", "Average", "Difference", "Transparent", "AND", "OR", "XOR", "Add", "Subtract", "Multiply", or "Divide".
setPixels(Object, int) - Method in class ij.ImageStack
Assigns a pixel array to the specified slice, were 1<=n<=nslices.
setPixels(Object) - Method in class ij.process.ByteProcessor
 
setPixels(Object) - Method in class ij.process.ColorProcessor
 
setPixels(Object) - Method in class ij.process.FloatProcessor
 
setPixels(Object) - Method in class ij.process.ImageProcessor
Sets a new pixel array for the image and resets the snapshot buffer.
setPixels(Object) - Method in class ij.process.ShortProcessor
 
setPolygon(int[], int[], int) - Method in class ij.process.PolygonFiller
Specifies the polygon to be filled.
setPrecision(int) - Method in class ij.measure.ResultsTable
Sets the number of digits to the right of decimal point.
setPrecision(int) - Static method in class ij.plugin.filter.Analyzer
Sets the number of digits displayed to the right of decimal point.
setPrimaryHDU(boolean) - Method in class nom.tam.fits.ImageHDU
Change the Image from/to primary
setPrimaryHDU(boolean) - Method in class nom.tam.fits.RandomGroupsHDU
Move a RandomGroupsHDU to or from the beginning of a FITS file.
setProcessor(String, ImageProcessor) - Method in class ij.ImagePlus
Replaces the ImageProcessor, if any, with the one specified.
setProgressBar(ProgressBar) - Method in class ij.process.ImageProcessor
Assigns a progress bar to this processor.
setProperty(String, Object) - Method in class ij.ImagePlus
Adds a key-value pair to this image's properties.
setQuality(int) - Static method in class ij.plugin.JpegWriter
Specifies the image quality (0-100).
setRestarts(int) - Method in class ij.measure.CurveFitter
Set number of simplex restarts to do
setRGB(byte[], byte[], byte[]) - Method in class ij.process.ColorProcessor
Sets the current pixels from 3 byte arrays (reg, green, blue).
setRoi(Roi) - Method in class ij.ImagePlus
Assigns the specified ROI to this image and displays it.
setRoi(int, int, int, int) - Method in class ij.ImagePlus
Creates a rectangular selection.
setRoi(Rectangle) - Method in class ij.ImagePlus
Creates a rectangular selection.
setRoi(Rectangle) - Method in class ij.ImageStack
 
setRoi(Rectangle) - Method in class ij.process.ImageProcessor
Defines a rectangular region of interest and sets the mask to null if this ROI is not the same size as the previous one.
setRoi(int, int, int, int) - Method in class ij.process.ImageProcessor
Defines a rectangular region of interest and sets the mask to null if this ROI is not the same size as the previous one.
setRoi(Roi) - Method in class ij.process.ImageProcessor
Defines a non-rectangular region of interest that will consist of a rectangular ROI and a mask.
setRoi(Polygon) - Method in class ij.process.ImageProcessor
Defines a polygonal region of interest that will consist of a rectangular ROI and a mask.
setRotater(Rotater) - Method in class skyview.geometry.Projection
Update the Rotater...
setRow(int, Object[]) - Method in class nom.tam.fits.AsciiTable
Modify a row in the table
setRow(int, Object[]) - Method in class nom.tam.fits.BinaryTable
Replace a row in the table.
setRow(int, Object[]) - Method in interface nom.tam.fits.TableData
 
setRow(int, Object[]) - Method in class nom.tam.fits.TableHDU
 
setRow(int, Object) - Method in class nom.tam.util.ColumnTable
Modify a row of data.
setRow(int, Object) - Method in interface nom.tam.util.DataTable
 
setSaved() - Static method in class ij.plugin.filter.Analyzer
 
setSeparators(String[]) - Method in class skyview.data.CoordinateFormatter
 
setSexagesimal(boolean) - Method in class skyview.data.AngScale
Do we want sexagesimal coordinates?
setSexagesimal(boolean) - Method in class skyview.data.CoordinateFormatter
 
setSexigesimal(boolean) - Method in class skyview.data.Gridder
Set whether you want sexagesimal labels
setShowProgress(boolean) - Method in class ij.process.FHT
Enables/disables display of the progress bar during transforms.
setSilentMode(boolean) - Method in class ij.io.Opener
The "Opening: path" status message is not displayed in silent mode.
setSimple(boolean) - Method in class nom.tam.fits.Header
Set the SIMPLE keyword to the given value.
setSimpleRange(double, double) - Method in class nom.tam.util.ByteFormatter
Set the range of real numbers that will be formatted in non-scientific notation, i.e., .00001 rather than 1.0e-5.
setSlice(int) - Method in class ij.ImagePlus
Activates the specified slice.
setSliceLabel(String, int) - Method in class ij.ImageStack
Sets the label of the specified slice, were 1<=n<=nslices.
setStack(String, ImageStack) - Method in class ij.ImagePlus
Replaces the stack, if any, with the one specified.
setStartSlice(int) - Method in class ij.plugin.ZProjector
 
setStopSlice(int) - Method in class ij.plugin.ZProjector
 
setStream(ArrayDataInput) - Method in class nom.tam.fits.Fits
Set the data stream to be used for future input.
setStrict(boolean) - Method in class skyview.geometry.imagefinder.Border
Set a strict geometry.
setStrict(boolean) - Method in class skyview.geometry.imagefinder.Corner
Set a strict geometry.
setStrict(boolean) - Method in class skyview.geometry.imagefinder.RecursiveImageFinder
Set a strict geometry.
setStrict(boolean) - Method in class skyview.geometry.ImageFinder
Do stricter tests of the best pixel match
setSystemLookAndFeel() - Static method in class ij.util.Java2
Sets the Swing look and feel to the system look and feel.
setTempCurrentImage(ImagePlus) - Static method in class ij.WindowManager
Makes the specified image temporarily the active image.
setTextPanel(TextPanel) - Static method in class ij.IJ
TextWindow calls this method with a null argument when the "Results" window is closed.
setThreshold(double, double) - Static method in class ij.IJ
Sets the lower and upper threshold levels and displays the image using red to highlight thresholded pixels.
setThreshold(double, double, String) - Static method in class ij.IJ
Sets the lower and upper threshold levels and displays the image using the specified displayMode ("Red", "Black & White", "Over/Under" or "No Update").
setThreshold(double, double, int) - Method in class ij.process.FloatProcessor
 
setThreshold(double, double, int) - Method in class ij.process.ImageProcessor
Sets the lower and upper threshold levels.
setThreshold(double, double, int) - Method in class ij.process.ShortProcessor
 
Settings - Class in skyview.executive
This class defines a singleton where SkyView preferences/settings can be set and gotten from anywhere in the system.
SettingsUpdater - Interface in skyview.executive
This interface defines an object that would like to take process the settings before processing begins.
setTitle(String) - Method in class ij.ImagePlus
Sets the image name.
setTitle(String) - Method in class ij.text.TextPanel
 
setTool(int) - Method in class ij.gui.Toolbar
 
setTool(int) - Static method in class ij.IJ
Switches to the specified tool, where id = Toolbar.RECTANGLE (0), Toolbar.OVAL (1), etc.
setTransform(Transformer) - Method in class skyview.geometry.sampler.ComboSampler
Set the transformation information.
setTransform(Transformer) - Method in class skyview.geometry.Sampler
Set the transformation information.
setTransparentColor(Color) - Method in interface ij.process.Blitter
Sets the transparent color used in the COPY_TRANSPARENT mode (default is Color.white).
setTransparentColor(Color) - Method in class ij.process.ByteBlitter
 
setTransparentColor(Color) - Method in class ij.process.ColorBlitter
 
setTransparentColor(Color) - Method in class ij.process.FloatBlitter
 
setTransparentColor(Color) - Method in class ij.process.ShortBlitter
 
setTransparentPixel(int) - Method in class ij.io.GifEncoder
 
setTruncateOnOverflow(boolean) - Method in class nom.tam.util.ByteFormatter
Set the truncation behavior.
setTruncationFill(char) - Method in class nom.tam.util.ByteFormatter
Set the truncation fill character.
setTruncationThrow(boolean) - Method in class nom.tam.util.ByteFormatter
Should truncations cause a truncation overflow?
setType(int) - Method in class ij.ImagePlus
 
setUnit(String) - Method in class ij.measure.Calibration
Sets the distance unit (e.g.
setup() - Method in class ij.gui.GenericDialog
 
setup() - Method in class ij.gui.HistogramWindow
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.Analyzer
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.AVIWriter
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.BackgroundSubtracter
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.Benchmark
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.Binary
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.BinaryFiller
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.CalibrationBar
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.Calibrator
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.Convolver
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.Duplicater
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.EDM
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.FFTCustomFilter
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.FFTFilter
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.Filler
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.Filters
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.FractalBoxCounter
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.GaussianBlur
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.ImageMath
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.ImageProperties
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.Info
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.LineGraphAnalyzer
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.LutApplier
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.LutViewer
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.ParticleAnalyzer
 
setup(String, ImagePlus) - Method in interface ij.plugin.filter.PlugInFilter
This method is called once when the filter is loaded.
setup(String, ImagePlus) - Method in class ij.plugin.filter.Printer
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.Profiler
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.Projector
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.RankFilters
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.Resizer
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.RGBStackSplitter
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.RoiWriter
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.Rotator
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.SaltAndPepper
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.ScaleDialog
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.Shadows
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.SpecifyROI
Called by ImageJ when the filter is loaded
setup(String, ImagePlus) - Method in class ij.plugin.filter.Transformer
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.UnsharpMask
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.Writer
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.XYCoordinates
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.XYWriter
 
setup(String, ImagePlus) - Method in class ij.plugin.filter.ZAxisProfiler
 
setup(int, ImagePlus) - Static method in class ij.Undo
 
setup(Object[], int[]) - Method in class nom.tam.util.ColumnTable
Actually perform the initialization.
SETUP_UNDO - Static variable in interface ij.macro.MacroConstants
 
setupDialog(ImagePlus, int) - Static method in class ij.IJ
Displays a "Process all slices?" dialog.
setupScroll(int, int) - Method in class ij.gui.ImageCanvas
 
setUseAsciiTables(boolean) - Static method in class nom.tam.fits.FitsFactory
Indicate whether ASCII tables should be used where feasible.
setUseHierarch(boolean) - Static method in class nom.tam.fits.FitsFactory
Enable/Disable hierarchical keyword processing.
setValue(String, int, double) - Method in class ij.measure.ResultsTable
Sets the value of the given column and row, where where 0<=row<counter.
setValue(int, int, double) - Method in class ij.measure.ResultsTable
Sets the value of the given column and row, where where 0<=column<MAX_COLUMNS and 0<=rowsetValue(double) - Method in class ij.process.ByteProcessor
Sets the default fill/draw value, where 0<=value<=255.
setValue(double) - Method in class ij.process.ColorProcessor
Sets the default fill/draw value, where value is interpreted as an RGB int.
setValue(double) - Method in class ij.process.FloatProcessor
Sets the default fill/draw value.
setValue(double) - Method in class ij.process.ImageProcessor
Sets the default fill/draw value.
setValue(double) - Method in class ij.process.ShortProcessor
Sets the default fill/draw value, where 0<=value<=65535).
setValue(String) - Method in class nom.tam.fits.HeaderCard
Set the value for this card.
setValueUnit(String) - Method in class ij.measure.Calibration
Sets the value unit.
setWeightingFactors(double, double, double) - Static method in class ij.process.ColorProcessor
Sets the weighting factors used by getPixelValue(), getHistogram() and convertToByte() to do color conversions.
setWidth(int) - Static method in class ij.gui.Line
 
setWindow(ImageWindow) - Method in class ij.ImagePlus
This method should only be called from an ImageWindow.
setWindow(Frame) - Static method in class ij.WindowManager
The specified frame becomes the front window, the one returnd by getFrontWindow().
setX(double) - Method in class skyview.request.SourceCoordinates
Set the X value
setXtension(String) - Method in class nom.tam.fits.Header
Set the XTENSION keyword to the given value.
setY(double) - Method in class skyview.request.SourceCoordinates
 
setZeroFill(boolean) - Method in class skyview.data.CoordinateFormatter
 
sexagesimal(double, int) - Method in class skyview.data.CoordinateFormatter
Create a sexagesimal string representing the coordinate value.
sexagesimal(double, int) - Static method in class skyview.util.Utilities
Format a sexagesimal coordinate string.
Shadows - Class in ij.plugin.filter
Implements the commands in the Process/Shadows submenu.
Shadows() - Constructor for class ij.plugin.filter.Shadows
 
ShapeRoi - Class in ij.gui
A subclass of ij.gui.Roi (2D Regions Of Interest) implemented in terms of java.awt.Shape.
ShapeRoi(Roi) - Constructor for class ij.gui.ShapeRoi
Constructs a ShapeRoi from an Roi.
ShapeRoi(float[]) - Constructor for class ij.gui.ShapeRoi
Constructs a ShapeRoi from an array of variable length path segments.
sharpen(ImageProcessor, double, double) - Method in class ij.plugin.filter.UnsharpMask
 
sharpen() - Method in class ij.process.ImageProcessor
Sharpens the image or ROI using a 3x3 convolution kernel.
SHIFT_LEFT - Static variable in interface ij.macro.MacroConstants
 
SHIFT_RIGHT - Static variable in interface ij.macro.MacroConstants
 
shiftKeyDown() - Static method in class ij.IJ
Returns true if the shift key is down.
SHORT_INDEX - Static variable in interface nom.tam.util.PrimitiveInfo
 
ShortBlitter - Class in ij.process
This class does bit blitting of 16-bit images.
ShortBlitter(ShortProcessor) - Constructor for class ij.process.ShortBlitter
Constructs a ShortBlitter from a ShortProcessor.
SHORTCUT_IN_USE - Static variable in class ij.Menus
 
shortcutInUse(String) - Static method in class ij.Menus
 
SHORTCUTS_MENU - Static variable in class ij.Menus
 
ShortProcessor - Class in ij.process
Objects of the class contain a 16-bit unsigned image and methods that operate on that image.
ShortProcessor(int, int, short[], ColorModel) - Constructor for class ij.process.ShortProcessor
Creates a new ShortProcessor using the specified pixel array and ColorModel.
ShortProcessor(int, int) - Constructor for class ij.process.ShortProcessor
Creates a blank ShortProcessor using the default grayscale LUT that displays zero as black.
ShortProcessor(int, int, short[], ColorModel, boolean) - Constructor for class ij.process.ShortProcessor
Obsolete.
ShortProcessor(int, int, boolean) - Constructor for class ij.process.ShortProcessor
Obsolete.
ShortStatistics - Class in ij.process
16-bit image statistics, including histogram.
ShortStatistics(ImageProcessor) - Constructor for class ij.process.ShortStatistics
Construct an ImageStatistics object from a ShortProcessor using the standard measurement options (area, mean, mode, min and max).
ShortStatistics(ImageProcessor, int, Calibration) - Constructor for class ij.process.ShortStatistics
Constructs a ShortStatistics object from a ShortProcessor using the specified measurement options.
show() - Method in class ij.gui.Plot
Displays the plot in a PlotWindow and returns a reference to the PlotWindow.
show(int, int) - Method in class ij.gui.ProgressBar
Updates the progress bar, where the length of the bar is set to (currentValue+1)/finalValue of the maximum bar length.
show(double) - Method in class ij.gui.ProgressBar
Updates the progress bar.
show() - Method in class ij.ImagePlus
Opens a window to display this image and clears the status bar.
show(String) - Method in class ij.ImagePlus
Opens a window to display this image and displays 'statusMessage' in the status bar.
show(String) - Method in class ij.measure.ResultsTable
Displays the contents of this ResultsTable in a window with the specified title.
show() - Method in class ij.plugin.ColorPicker
Overrides ImagePlus.show().
SHOW_MESSAGE - Static variable in interface ij.macro.MacroConstants
 
SHOW_MESSAGE_WITH_CANCEL - Static variable in interface ij.macro.MacroConstants
 
SHOW_NONE - Static variable in class ij.plugin.filter.ParticleAnalyzer
Do not display particle outline image.
SHOW_OUTLINES - Static variable in class ij.plugin.filter.ParticleAnalyzer
Display image containing outlines of measured paticles.
SHOW_PROGRESS - Static variable in interface ij.macro.MacroConstants
 
SHOW_PROGRESS - Static variable in class ij.plugin.filter.ParticleAnalyzer
Display a progress bar.
SHOW_RESULTS - Static variable in class ij.plugin.filter.ParticleAnalyzer
Display results in the ImageJ console.
SHOW_STATUS - Static variable in interface ij.macro.MacroConstants
 
SHOW_SUMMARY - Static variable in class ij.plugin.filter.ParticleAnalyzer
Obsolete
showChoice - Static variable in class ij.plugin.filter.ParticleAnalyzer
 
showDialog() - Method in class ij.gui.GenericDialog
Displays this dialog box.
showDialog() - Method in class ij.plugin.FFTMath
 
showDialog() - Method in class ij.plugin.filter.BackgroundSubtracter
 
showDialog(ImagePlus) - Method in class ij.plugin.filter.Calibrator
 
showDialog() - Method in class ij.plugin.filter.GaussianBlur
 
showDialog() - Method in class ij.plugin.filter.ParticleAnalyzer
Displays a modal options dialog.
showDialog() - Method in class ij.plugin.filter.Projector
 
showDialog() - Method in class ij.plugin.filter.UnsharpMask
 
showDialog() - Method in class ij.plugin.NewPlugin
 
showHistogram(ImagePlus, int) - Method in class ij.gui.HistogramWindow
Draws the histogram using the specified title and number of bins.
showHistogram(ImagePlus, int, double, double) - Method in class ij.gui.HistogramWindow
Draws the histogram using the specified title, number of bins and histogram range.
showHistogram(ImagePlus, ImageStatistics) - Method in class ij.gui.HistogramWindow
Draws the histogram using the specified title and ImageStatistics.
showList() - Method in class ij.gui.HistogramWindow
 
showMessage(String) - Static method in class ij.IJ
Displays a message in a dialog box titled "Message".
showMessage(String, String) - Static method in class ij.IJ
Displays a message in a dialog box with the specified title.
showMessageWithCancel(String, String) - Static method in class ij.IJ
Displays a message in a dialog box with the specified title.
showProgress(double) - Static method in class ij.IJ
Updates the progress bar, where 0<=progress<=1.0.
showProgress(int, int) - Static method in class ij.IJ
Updates the progress bar, where bar-length = (currentIndex/finalIndex)*total-length.
showProgress - Variable in class ij.plugin.filter.ParticleAnalyzer
 
showProgress(double) - Method in class ij.process.ImageProcessor
 
showResults - Variable in class ij.plugin.filter.ParticleAnalyzer
 
showSizeDistribution - Variable in class ij.plugin.filter.ParticleAnalyzer
 
showSlice(int) - Method in class ij.gui.StackWindow
Displays the specified slice and updates the stack scrollbar.
showStatus() - Method in class ij.gui.Roi
 
showStatus(String) - Static method in class ij.IJ
Displays a message in the ImageJ status bar.
showTime(ImagePlus, long, String) - Static method in class ij.IJ
 
SIAPGenerator - Class in skyview.survey
This class gets a set of candidates from a SIAP request
SIAPGenerator() - Constructor for class skyview.survey.SIAPGenerator
 
SimpleCommands - Class in ij.plugin
This plugin implements the Help/About ImageJ, Help/ImageJ Web Site, Plugins/Utilities/Unlock Image and the Image/Rename commands.
SimpleCommands() - Constructor for class ij.plugin.SimpleCommands
 
SIN - Static variable in interface ij.macro.MacroConstants
 
SinProjecter - Class in skyview.geometry.projecter
 
SinProjecter() - Constructor for class skyview.geometry.projecter.SinProjecter
 
SinProjecter.SinDeprojecter - Class in skyview.geometry.projecter
 
SinProjecter.SinDeprojecter() - Constructor for class skyview.geometry.projecter.SinProjecter.SinDeprojecter
 
size() - Method in class nom.tam.fits.Fits
Deprecated. The meaning of size of ambiguous. Use
size() - Method in class nom.tam.fits.FitsHeap
Return the size of the Heap
size() - Method in class nom.tam.fits.Header
Deprecated. see numberOfCards(). The units of the size of the header may be unclear.
size() - Method in class nom.tam.util.HashedList
Return the number of elements in the list.
sizes - Static variable in interface nom.tam.util.PrimitiveInfo
Sizes
skeletonize() - Method in class ij.process.BinaryProcessor
Uses a lookup table to repeatably removes pixels from the edges of objects in a binary image, reducing them to single pixel wide skeletons.
skeletonize() - Method in class ij.process.ByteProcessor
 
SKEWNESS - Static variable in interface ij.measure.Measurements
 
SKEWNESS - Static variable in class ij.measure.ResultsTable
 
skewness - Variable in class ij.process.ImageStatistics
 
skip(long) - Method in interface nom.tam.util.ArrayDataInput
 
skip(long) - Method in class nom.tam.util.BufferedFile
Skip from the current position.
skip(int) - Method in class nom.tam.util.ByteParser
Skip bytes in the buffer
skipBytes(int) - Method in class nom.tam.util.BufferedDataInputStream
Skip the requested number of bytes.
skipBytes(int) - Method in class nom.tam.util.BufferedFile
Skip the number of bytes.
skipData(ArrayDataInput, Header) - Static method in class nom.tam.fits.BasicHDU
Skip the Data object immediately after the given Header object on the given stream object.
skipData(ArrayDataInput) - Method in class nom.tam.fits.BasicHDU
Skip the Data object for this HDU.
skipHDU(int) - Method in class nom.tam.fits.Fits
Skip HDUs on the associate input stream.
skipHDU() - Method in class nom.tam.fits.Fits
Skip the next HDU on the default input stream.
skipWhite(int) - Method in class nom.tam.util.ByteParser
Skip white space.
skyview - package skyview
 
skyview.data - package skyview.data
 
skyview.executive - package skyview.executive
 
skyview.geometry - package skyview.geometry
 
skyview.geometry.csys - package skyview.geometry.csys
 
skyview.geometry.deedger - package skyview.geometry.deedger
 
skyview.geometry.distorter - package skyview.geometry.distorter
 
skyview.geometry.imagefinder - package skyview.geometry.imagefinder
 
skyview.geometry.projecter - package skyview.geometry.projecter
 
skyview.geometry.sampler - package skyview.geometry.sampler
 
skyview.geometry.spheredistorter - package skyview.geometry.spheredistorter
 
skyview.ij - package skyview.ij
 
skyview.request - package skyview.request
 
skyview.survey - package skyview.survey
 
skyview.util - package skyview.util
 
skyview.vo - package skyview.vo
 
slice - Variable in class ij.gui.StackWindow
 
SLICE - Static variable in interface ij.measure.Measurements
 
SLICE - Static variable in class ij.measure.ResultsTable
 
slice - Variable in class ij.plugin.filter.ParticleAnalyzer
 
sliceLabels - Variable in class ij.io.FileInfo
 
Slicer - Class in ij.plugin
Implements the Image/Stacks/Reslice command.
Slicer() - Constructor for class ij.plugin.Slicer
 
sliceSelector - Variable in class ij.gui.StackWindow
 
slider - Variable in class ij.gui.GenericDialog
 
SmartIntArray - Class in skyview.util
this class allows you to build an array as you go.
SmartIntArray() - Constructor for class skyview.util.SmartIntArray
 
SmartIntArray(int) - Constructor for class skyview.util.SmartIntArray
 
SmartIntArray(int, int) - Constructor for class skyview.util.SmartIntArray
 
smooth() - Method in class ij.process.ImageProcessor
Replaces each pixel with the 3x3 neighborhood mean.
SNAPSHOT - Static variable in interface ij.macro.MacroConstants
 
snapshot() - Method in class ij.process.ByteProcessor
Make a snapshot of the current image.
snapshot() - Method in class ij.process.ColorProcessor
 
snapshot() - Method in class ij.process.FloatProcessor
 
snapshot() - Method in class ij.process.ImageProcessor
Makes a copy of this image's pixel data.
snapshot() - Method in class ij.process.ShortProcessor
 
snapshotHeight - Variable in class ij.process.ImageProcessor
 
snapshotPixels - Variable in class ij.process.ByteProcessor
 
snapshotPixels - Variable in class ij.process.ColorProcessor
 
snapshotWidth - Variable in class ij.process.ImageProcessor
 
SocketListener - Class in ij
Runs commands sent to the port returned by ImageJ.getPort().
SocketListener() - Constructor for class ij.SocketListener
 
SOFTWARE - Static variable in class ij.io.TiffDecoder
 
sort(ImageStack) - Method in class ij.plugin.DICOM_Sorter
 
sort(String[]) - Static method in class ij.util.StringSorter
Sorts the array.
sort(Comparator) - Method in class nom.tam.util.HashedList
Sort the keys into some desired order.
source - Variable in class ij.process.ImageProcessor
 
SourceCoordinates - Class in skyview.request
Converts user input to coordinates and stores coordinates in decimal and sexigesimal formats.
SourceCoordinates(double, double) - Constructor for class skyview.request.SourceCoordinates
 
SourceCoordinates(String, String, double, String) - Constructor for class skyview.request.SourceCoordinates
Constructor
south(ImageProcessor) - Method in class ij.plugin.filter.Shadows
 
southeast(ImageProcessor) - Method in class ij.plugin.filter.Shadows
 
southwest(ImageProcessor) - Method in class ij.plugin.filter.Shadows
 
spaceBarDown() - Static method in class ij.IJ
Returns true if the space bar is down.
SPARE1 - Static variable in class ij.gui.Toolbar
 
SPARE2 - Static variable in class ij.gui.Toolbar
 
SPARE3 - Static variable in class ij.gui.Toolbar
 
SPARE4 - Static variable in class ij.gui.Toolbar
 
SPARE5 - Static variable in class ij.gui.Toolbar
 
SPARE6 - Static variable in class ij.gui.Toolbar
 
SPARE7 - Static variable in class ij.gui.Toolbar
 
specialReference() - Method in class skyview.geometry.Projection
 
SpecifyROI - Class in ij.plugin.filter
This plugin implements the Edit/Selection/Specify command.
SpecifyROI() - Constructor for class ij.plugin.filter.SpecifyROI
 
sphdist(double, double, double, double) - Static method in class skyview.geometry.Util
Distance between two points on a unit sphere.
sphdistDeg(double, double, double, double) - Static method in class skyview.geometry.Util
Distance between two points on a unit sphere with angles in degres.
SphereDistorter - Class in skyview.geometry
This class defines a non-linear distortion in the image plane.
SphereDistorter() - Constructor for class skyview.geometry.SphereDistorter
 
SplineFitter - Class in ij.measure
This class fits a spline function to a set of points.
SplineFitter(int[], int[], int) - Constructor for class ij.measure.SplineFitter
 
splinePoints - Variable in class ij.gui.PolygonRoi
 
SplineSampler - Class in skyview.geometry.sampler
 
SplineSampler() - Constructor for class skyview.geometry.sampler.SplineSampler
 
SPLIT - Static variable in interface ij.macro.MacroConstants
 
split(ImagePlus) - Method in class ij.plugin.filter.RGBStackSplitter
Splits the specified RGB image or stack into three 8-bit grayscale images or stacks.
split(ImageStack, boolean) - Method in class ij.plugin.filter.RGBStackSplitter
Splits the specified RGB stack into three 8-bit grayscale stacks.
split(String) - Static method in class ij.util.Tools
Splits a string into substrings using the default delimiter set, which is " \t\n\r" (space, tab, newline and carriage-return).
split(String, String) - Static method in class ij.util.Tools
Splits a string into substring using the characters contained in the second argument as the delimiter set.
SPLIT_X - Static variable in class skyview.geometry.imagefinder.Border
 
SPLIT_XY - Static variable in class skyview.geometry.imagefinder.Border
 
SPLIT_Y - Static variable in class skyview.geometry.imagefinder.Border
 
sqr() - Method in class ij.process.FloatProcessor
 
sqr() - Method in class ij.process.ImageProcessor
Performs a square transform on the image or ROI.
sqr() - Method in class ij.process.ShortProcessor
 
SQRT - Static variable in interface ij.macro.MacroConstants
 
sqrt() - Method in class ij.process.FloatProcessor
 
sqrt() - Method in class ij.process.ImageProcessor
Performs a square root transform on the image or ROI.
sqrt() - Method in class ij.process.ShortProcessor
 
SqrtScaler - Class in skyview.util
Scale an object linearly.
SqrtScaler() - Constructor for class skyview.util.SqrtScaler
Provide default scaler that positive values will scale the array as the square root between 0-255.
SqrtScaler(double, double, int, int, boolean) - Constructor for class skyview.util.SqrtScaler
Provide a scaler with a specified scaling range to a specified range of bytes.
srcRect - Variable in class ij.gui.ImageCanvas
 
STACK_REQUIRED - Static variable in interface ij.plugin.filter.PlugInFilter
Set this flag if the filter requires a stack.
StackConverter - Class in ij.process
This class does stack type conversions.
StackConverter(ImagePlus) - Constructor for class ij.process.StackConverter
 
StackEditor - Class in ij.plugin
Implements the AddSlice, DeleteSlice and "Convert Windows to Stack" commands.
StackEditor() - Constructor for class ij.plugin.StackEditor
 
StackProcessor - Class in ij.process
This class processes stacks.
StackProcessor(ImageStack, ImageProcessor) - Constructor for class ij.process.StackProcessor
Constructs a StackProcessor from a stack.
StackStatistics - Class in ij.process
Statistics, including the histogram, of a stack.
StackStatistics(ImagePlus) - Constructor for class ij.process.StackStatistics
 
StackStatistics(ImagePlus, int, double, double) - Constructor for class ij.process.StackStatistics
 
StackWindow - Class in ij.gui
This class is an extended ImageWindow used to display image stacks.
StackWindow(ImagePlus) - Constructor for class ij.gui.StackWindow
 
StackWindow(ImagePlus, ImageCanvas) - Constructor for class ij.gui.StackWindow
 
StackWriter - Class in ij.plugin
Writes the slices of stack as separate files.
StackWriter() - Constructor for class ij.plugin.StackWriter
 
standardWCS() - Method in class skyview.geometry.WCS
 
startPaste(ImagePlus) - Method in class ij.gui.Roi
 
STARTS_WITH - Static variable in interface ij.macro.MacroConstants
 
startTiming() - Method in class ij.ImagePlus
Calls System.currentTimeMillis() to save the current time so it can be retrieved later using getStartTime() to calculate the elapsed time of an operation.
stats - Variable in class ij.gui.HistogramWindow
 
STD_DEV - Static variable in interface ij.measure.Measurements
 
STD_DEV - Static variable in class ij.measure.ResultsTable
 
stdDev - Variable in class ij.process.ImageStatistics
 
stop() - Method in class skyview.request.SourceCoordinates
 
str - Variable in class ij.macro.Symbol
 
STRAIGHT_LINE - Static variable in class ij.measure.Calibration
 
STRAIGHT_LINE - Static variable in class ij.measure.CurveFitter
 
streamInit(InputStream, boolean, boolean) - Method in class nom.tam.fits.Fits
Do the stream initialization.
stretchHistogram(ImagePlus, double) - Method in class ij.plugin.ContrastEnhancer
 
stretchHistogram(ImageProcessor, double) - Method in class ij.plugin.ContrastEnhancer
 
stretchHistogram(ImageProcessor, double, ImageStatistics) - Method in class ij.plugin.ContrastEnhancer
 
STRING_CONSTANT - Static variable in interface ij.macro.MacroConstants
 
STRING_FUNCTION - Static variable in interface ij.macro.MacroConstants
 
stringField - Variable in class ij.gui.GenericDialog
 
stringFunctionIDs - Static variable in interface ij.macro.MacroConstants
 
stringFunctions - Static variable in interface ij.macro.MacroConstants
 
StringSorter - Class in ij.util
A simple QuickSort for String arrays.
StringSorter() - Constructor for class ij.util.StringSorter
 
stringsToByteArray(String[], int) - Static method in class nom.tam.fits.FitsUtil
Copy an array of Strings to bytes.
STRIP_BYTE_COUNT - Static variable in class ij.io.TiffDecoder
 
STRIP_OFFSETS - Static variable in class ij.io.TiffDecoder
 
stripLengths - Variable in class ij.io.FileInfo
 
stripOffsets - Variable in class ij.io.FileInfo
 
SUBSTRING - Static variable in interface ij.macro.MacroConstants
 
SUBTRACT - Static variable in interface ij.process.Blitter
dst=dst-src
subtractBackround(ImageProcessor, int) - Method in class ij.plugin.filter.BackgroundSubtracter
Implements a rolling-ball algorithm for the removal of smooth continuous background from a two-dimensional gel image.
subtractPoints(Roi) - Method in class ij.gui.PointRoi
Subtract the points that intersect the specified ROI and return the result.
subtractRGBBackround(ColorProcessor, int) - Method in class ij.plugin.filter.BackgroundSubtracter
 
suffixes - Static variable in interface nom.tam.util.PrimitiveInfo
Suffixes used for the classnames for primitive arrays.
SUM_METHOD - Static variable in class ij.plugin.ZProjector
 
summarize() - Method in class ij.plugin.filter.Analyzer
 
sunlong(double) - Static method in class skyview.geometry.csys.HelioeclipticCoordinateSystem
Find the ecliptic longitude of the Sun at a given epoch.
SUPPORTS_MASKING - Static variable in interface ij.plugin.filter.PlugInFilter
Set this flag if the filter wants ImageJ, for non-rectangular ROIs, to restore that part of the image that's inside the bounding rectangle but outside of the ROI.
SurfacePlotter - Class in ij.plugin
 
SurfacePlotter() - Constructor for class ij.plugin.SurfacePlotter
 
surv - Variable in class skyview.executive.Imager
The current Survey object being used.
Survey - Interface in skyview.survey
methods for describing and manipulating survey data
SurveyException - Exception in skyview.survey
This class is used for exceptions problems with the data in a survey.
SurveyException() - Constructor for exception skyview.survey.SurveyException
 
SurveyException(String) - Constructor for exception skyview.survey.SurveyException
 
SurveyFinder - Interface in skyview.survey
This interface defines the role of something that can find a survey given a survey id.
swapQuadrants(ImageProcessor) - Method in class ij.process.FHT
Swap quadrants 1 and 3 and 2 and 4 of the specified ImageProcessor so the power spectrum origin is at the center of the image.
swapQuadrants() - Method in class ij.process.FHT
Swap quadrants 1 and 3 and 2 and 4 of the image contained in this FHT.
Symbol - Class in ij.macro
Objects of this class are used as entries in the macro language symbol table.

T

t2 - Variable in class skyview.geometry.imagefinder.Border
Transformation temporaries
t3 - Variable in class skyview.geometry.imagefinder.Border
 
TABLE_FULL - Static variable in class ij.measure.ResultsTable
 
TableData - Interface in nom.tam.fits
This class allows FITS binary and ASCII tables to be accessed via a common interface.
TableException - Exception in nom.tam.util
 
TableException() - Constructor for exception nom.tam.util.TableException
 
TableException(String) - Constructor for exception nom.tam.util.TableException
 
TableHDU - Class in nom.tam.fits
This class allows FITS binary and ASCII tables to be accessed via a common interface.
TAN - Static variable in interface ij.macro.MacroConstants
 
TanProjecter - Class in skyview.geometry.projecter
 
TanProjecter() - Constructor for class skyview.geometry.projecter.TanProjecter
 
TanProjecter.TanDeprojecter - Class in skyview.geometry.projecter
 
TanProjecter.TanDeprojecter() - Constructor for class skyview.geometry.projecter.TanProjecter.TanDeprojecter
 
testArgs(String[]) - Static method in class nom.tam.fits.FitsDate
 
testPattern(Object, byte) - Static method in class nom.tam.util.ArrayFuncs
Just create a simple pattern cycling through valid byte values.
TEXT - Static variable in class ij.gui.Toolbar
 
TEXT - Static variable in class ij.io.Opener
 
TEXT_FILE - Static variable in class ij.plugin.NewPlugin
 
textArea1 - Variable in class ij.gui.GenericDialog
 
textArea2 - Variable in class ij.gui.GenericDialog
 
TextEncoder - Class in ij.io
Saves an image described by an ImageProcessor object as a tab-delimited text file.
TextEncoder(ImageProcessor, Calibration, int) - Constructor for class ij.io.TextEncoder
Constructs a