Serialized Form
Class ij.ImageJ extends java.awt.Frame implements Serializable |
toolbar
Toolbar toolbar
statusBar
java.awt.Panel statusBar
progressBar
ProgressBar progressBar
statusLine
java.awt.Label statusLine
firstTime
boolean firstTime
applet
java.applet.Applet applet
classes
java.util.Vector<E> classes
exitWhenQuiting
boolean exitWhenQuiting
quitting
boolean quitting
keyPressedTime
long keyPressedTime
actionPerformedTime
long actionPerformedTime
hotkey
boolean hotkey
numberField
java.util.Vector<E> numberField
stringField
java.util.Vector<E> stringField
checkbox
java.util.Vector<E> checkbox
choice
java.util.Vector<E> choice
slider
java.util.Vector<E> slider
textArea1
java.awt.TextArea textArea1
textArea2
java.awt.TextArea textArea2
defaultValues
java.util.Vector<E> defaultValues
defaultText
java.util.Vector<E> defaultText
theLabel
java.awt.Component theLabel
cancel
java.awt.Button cancel
okay
java.awt.Button okay
wasCanceled
boolean wasCanceled
y
int y
nfIndex
int nfIndex
sfIndex
int sfIndex
cbIndex
int cbIndex
choiceIndex
int choiceIndex
grid
java.awt.GridBagLayout grid
c
java.awt.GridBagConstraints c
firstNumericField
boolean firstNumericField
firstSlider
boolean firstSlider
invalidNumber
boolean invalidNumber
errorMessage
java.lang.String errorMessage
firstPaint
boolean firstPaint
labels
java.util.Hashtable<K,V> labels
macro
boolean macro
macroOptions
java.lang.String macroOptions
stats
ImageStatistics stats
histogram
int[] histogram
lut
LookUpTable lut
frame
java.awt.Rectangle frame
list
java.awt.Button list
save
java.awt.Button save
copy
java.awt.Button copy
log
java.awt.Button log
value
java.awt.Label value
count
java.awt.Label count
decimalPlaces
int decimalPlaces
digits
int digits
newMaxCount
int newMaxCount
plotScale
int plotScale
logScale
boolean logScale
cal
Calibration cal
yMax
int yMax
imp
ImagePlus imp
imageUpdated
boolean imageUpdated
srcRect
java.awt.Rectangle srcRect
imageWidth
int imageWidth
imageHeight
int imageHeight
xMouse
int xMouse
yMouse
int yMouse
ij
ImageJ ij
magnification
double magnification
dstWidth
int dstWidth
dstHeight
int dstHeight
xMouseStart
int xMouseStart
yMouseStart
int yMouseStart
xSrcStart
int xSrcStart
ySrcStart
int ySrcStart
flags
int flags
firstFrame
long firstFrame
frames
int frames
fps
int fps
count
int count
imp
ImagePlus imp
ij
ImageJ ij
ic
ImageCanvas ic
initialMagnification
double initialMagnification
newWidth
int newWidth
newHeight
int newHeight
closed
boolean closed
textGap
int textGap
running
boolean running
- This variable is set false if presses the escape key or closes the window.
running2
boolean running2
- This variable is set false if the user clicks in this
window, presses the escape key, or closes the window.
x1
int x1
y1
int y1
x2
int x2
y2
int y2
x1d
double x1d
y1d
double y1d
x2d
double x2d
y2d
double y2d
x1R
double x1R
y1R
double y1R
x2R
double x2R
y2R
double y2R
xHandleOffset
double xHandleOffset
yHandleOffset
double yHandleOffset
startxd
double startxd
startyd
double startyd
button
java.awt.Button button
label
MultiLineLabel label
lines
java.lang.String[] lines
num_lines
int num_lines
margin_width
int margin_width
margin_height
int margin_height
line_height
int line_height
line_ascent
int line_ascent
line_widths
int[] line_widths
max_width
int max_width
list
java.awt.Button list
save
java.awt.Button save
copy
java.awt.Button copy
coordinates
java.awt.Label coordinates
font
java.awt.Font font
defaultDigits
int defaultDigits
realNumbers
boolean realNumbers
xdigits
int xdigits
ydigits
int ydigits
markSize
int markSize
plot
Plot plot
maxPoints
int maxPoints
xp
int[] xp
yp
int[] yp
xp2
int[] xp2
yp2
int[] yp2
nPoints
int nPoints
xSpline
int[] xSpline
ySpline
int[] ySpline
xScreenSpline
int[] xScreenSpline
yScreenSpline
int[] yScreenSpline
splinePoints
int splinePoints
clip
java.awt.Rectangle clip
angle1
double angle1
degrees
double degrees
xClipMin
int xClipMin
yClipMin
int yClipMin
xClipMax
int xClipMax
yClipMax
int yClipMax
userCreated
boolean userCreated
mouseUpTime
long mouseUpTime
canvasWidth
int canvasWidth
canvasHeight
int canvasHeight
x
int x
y
int y
width
int width
height
int height
percent
double percent
startTime
long startTime
count
int count
showBar
boolean showBar
negativeProgress
boolean negativeProgress
barColor
java.awt.Color barColor
fillColor
java.awt.Color fillColor
backgroundColor
java.awt.Color backgroundColor
frameBrighter
java.awt.Color frameBrighter
frameDarker
java.awt.Color frameDarker
Class ij.gui.Roi extends java.lang.Object implements Serializable |
startX
int startX
startY
int startY
x
int x
y
int y
width
int width
height
int height
activeHandle
int activeHandle
state
int state
modState
int modState
type
int type
xMax
int xMax
yMax
int yMax
imp
ImagePlus imp
ic
ImageCanvas ic
oldX
int oldX
oldY
int oldY
oldWidth
int oldWidth
oldHeight
int oldHeight
clipX
int clipX
clipY
int clipY
clipWidth
int clipWidth
clipHeight
int clipHeight
clipboard
ImagePlus clipboard
constrain
boolean constrain
center
boolean center
updateFullWindow
boolean updateFullWindow
mag
double mag
name
java.lang.String name
cachedMask
ImageProcessor cachedMask
dontSave
java.awt.Button dontSave
cancel
java.awt.Button cancel
save
java.awt.Button save
cancelPressed
boolean cancelPressed
savePressed
boolean savePressed
shape
java.awt.Shape shape
- The
java.awt.Shape
encapsulated by this object.
maxerror
double maxerror
- The instance value of the maximum tolerance (MAXERROR) allowed in calculating the
length of the curve segments of this ROI's shape.
flatness
double flatness
- The instance value of the coefficient (FLATNESS) used to
obtain a flattened version of this ROI's shape.
maxPoly
int maxPoly
- The instance value of MAXPOLY.
flatten
boolean flatten
- If true then methods that manipulate this ROI's shape will work on
a flattened version of the shape.
forceTrace
boolean forceTrace
- Flag which specifies how Roi objects will be constructed from closed (sub)paths having more than
MAXPOLY
and composed exclusively of line segments.
If true
then (sub)path will be parsed into a
Roi.TRACED_ROI
; else, into a Roi.FREEROI
.
forceAngle
boolean forceAngle
- Flag which specifies if Roi objects constructed from open (sub)paths composed of only two line segments
will be of type
Roi.ANGLE
.
If true
then (sub)path will be parsed into a Roi.ANGLE
;
else, into a Roi.POLYLINE
.
savedRois
java.util.Vector<E> savedRois
sliceSelector
java.awt.Scrollbar sliceSelector
thread
java.lang.Thread thread
done
boolean done
slice
int slice
theText
java.lang.String[] theText
previousMag
double previousMag
firstChar
boolean firstChar
firstMouseUp
boolean firstMouseUp
cline
int cline
ps
java.awt.Dimension ps
down
boolean[] down
previous
int previous
x
int x
y
int y
xOffset
int xOffset
yOffset
int yOffset
mouseDownTime
long mouseDownTime
g
java.awt.Graphics g
mpPrevious
int mpPrevious
names
java.lang.String[] names
icons
java.lang.String[] icons
pc
int pc
icon
java.lang.String icon
macroInstaller
MacroInstaller macroInstaller
gray
java.awt.Color gray
brighter
java.awt.Color brighter
darker
java.awt.Color darker
evenDarker
java.awt.Color evenDarker
trim
int trim
yesB
java.awt.Button yesB
noB
java.awt.Button noB
cancelB
java.awt.Button cancelB
cancelPressed
boolean cancelPressed
yesPressed
boolean yesPressed
plot
ij.plugin.frame.ContrastPlot plot
thread
java.lang.Thread thread
minSliderValue
int minSliderValue
maxSliderValue
int maxSliderValue
brightnessValue
int brightnessValue
contrastValue
int contrastValue
sliderRange
int sliderRange
doAutoAdjust
boolean doAutoAdjust
doReset
boolean doReset
doSet
boolean doSet
doApplyLut
boolean doApplyLut
panel
java.awt.Panel panel
tPanel
java.awt.Panel tPanel
autoB
java.awt.Button autoB
resetB
java.awt.Button resetB
setB
java.awt.Button setB
applyB
java.awt.Button applyB
previousImageID
int previousImageID
previousType
int previousType
previousSnapshot
java.lang.Object previousSnapshot
ij
ImageJ ij
min
double min
max
double max
previousMin
double previousMin
previousMax
double previousMax
defaultMin
double defaultMin
defaultMax
double defaultMax
contrast
int contrast
brightness
int brightness
RGBImage
boolean RGBImage
minSlider
java.awt.Scrollbar minSlider
maxSlider
java.awt.Scrollbar maxSlider
contrastSlider
java.awt.Scrollbar contrastSlider
brightnessSlider
java.awt.Scrollbar brightnessSlider
minLabel
java.awt.Label minLabel
maxLabel
java.awt.Label maxLabel
windowLabel
java.awt.Label windowLabel
levelLabel
java.awt.Label levelLabel
done
boolean done
autoThreshold
int autoThreshold
gridbag
java.awt.GridBagLayout gridbag
c
java.awt.GridBagConstraints c
y
int y
windowLevel
boolean windowLevel
balance
boolean balance
monoFont
java.awt.Font monoFont
sanFont
java.awt.Font sanFont
channels
int channels
choice
java.awt.Choice choice
ta
java.awt.TextArea ta
path
java.lang.String path
changes
boolean changes
fileMenu
java.awt.Menu fileMenu
editMenu
java.awt.Menu editMenu
p
java.util.Properties p
macroStarts
int[] macroStarts
macroNames
java.lang.String[] macroNames
mb
java.awt.MenuBar mb
macrosMenu
java.awt.Menu macrosMenu
nMacros
int nMacros
pgm
Program pgm
eventCount
int eventCount
shortcutsInUse
java.lang.String shortcutsInUse
inUseCount
int inUseCount
nShortcuts
int nShortcuts
installer
MacroInstaller installer
dontShowWindow
boolean dontShowWindow
fit
java.awt.Choice fit
doIt
java.awt.Button doIt
open
java.awt.Button open
apply
java.awt.Button apply
settings
java.awt.Checkbox settings
fitTypeStr
java.lang.String fitTypeStr
textArea
java.awt.TextArea textArea
dx
double[] dx
dy
double[] dy
x
double[] x
y
double[] y
panel
java.awt.Panel panel
font
java.awt.Choice font
size
java.awt.Choice size
style
java.awt.Choice style
sliderRange
int sliderRange
slider
java.awt.Scrollbar slider
value
int value
setText
boolean setText
thread
java.lang.Thread thread
done
boolean done
tf
java.awt.TextField tf
panel
java.awt.Panel panel
pasteMode
java.awt.Choice pasteMode
title
java.lang.String title
makeMacro
java.awt.Button makeMacro
help
java.awt.Button help
macroName
java.awt.TextField macroName
fitTypeStr
java.lang.String fitTypeStr
panel
java.awt.Panel panel
list
java.awt.List list
rois
java.util.Hashtable<K,V> rois
roiCopy
Roi roiCopy
slice2
int slice2
canceled
boolean canceled
macro
boolean macro
ignoreInterrupts
boolean ignoreInterrupts
plot
ij.plugin.frame.ThresholdPlot plot
thread
java.lang.Thread thread
minValue
int minValue
maxValue
int maxValue
sliderRange
int sliderRange
doAutoAdjust
boolean doAutoAdjust
doReset
boolean doReset
doApplyLut
boolean doApplyLut
doStateChange
boolean doStateChange
doSet
boolean doSet
panel
java.awt.Panel panel
autoB
java.awt.Button autoB
resetB
java.awt.Button resetB
applyB
java.awt.Button applyB
setB
java.awt.Button setB
previousImageID
int previousImageID
previousImageType
int previousImageType
previousMin
double previousMin
previousMax
double previousMax
ij
ImageJ ij
minThreshold
double minThreshold
maxThreshold
double maxThreshold
minSlider
java.awt.Scrollbar minSlider
maxSlider
java.awt.Scrollbar maxSlider
label1
java.awt.Label label1
label2
java.awt.Label label2
done
boolean done
invertedLut
boolean invertedLut
lutColor
int lutColor
firstActivation
boolean firstActivation
iGridWidth
int iGridWidth
iGridHeight
int iGridHeight
iX
int iX
iY
int iY
sColHead
java.lang.String[] sColHead
vData
java.util.Vector<E> vData
iColWidth
int[] iColWidth
iColCount
int iColCount
iRowCount
int iRowCount
iRowHeight
int iRowHeight
iFirstRow
int iFirstRow
sbHoriz
java.awt.Scrollbar sbHoriz
sbVert
java.awt.Scrollbar sbVert
iSbWidth
int iSbWidth
iSbHeight
int iSbHeight
bDrag
boolean bDrag
iXDrag
int iXDrag
iColDrag
int iColDrag
headings
boolean headings
title
java.lang.String title
labels
java.lang.String labels
keyListener
java.awt.event.KeyListener keyListener
resizeCursor
java.awt.Cursor resizeCursor
defaultCursor
java.awt.Cursor defaultCursor
selStart
int selStart
selEnd
int selEnd
selOrigin
int selOrigin
selLine
int selLine
tc
ij.text.TextCanvas tc
pm
java.awt.PopupMenu pm
columnsManuallyAdjusted
boolean columnsManuallyAdjusted
textPanel
TextPanel textPanel
components
java.util.ArrayList<E> components
compArr
Transformer[] compArr
datArr
double[][] datArr
d2
double[] d2
d3
double[] d3
checked
boolean checked
stdDeedger
Processor stdDeedger
- The object that will do all the work.
This should be updated if a better deedger is available.
zero
double zero
- The starting value for first output bin (first input bin goes from 0-1)
delta
double delta
- The size of each output bin (in input bins)
n
int n
- The number of output bins
usedImageNames
java.util.ArrayList<E> usedImageNames
matrix
double[][] matrix
- The matrix coefficients.
transRot
Rotater transRot
- The transpose coefficients.
temp
double[] temp
- Temporary for when data is aliased.
inImage
Image inImage
- The input image. It should have a size inHeight*inWidth*inDepth
inHeight
int inHeight
inWidth
int inWidth
inDepth
int inDepth
bounds
int[] bounds
- This gives the minX,maxX, minY,maxY pixel values for the current
output image. We can use this to limit the region of the input
image we are interested in.
outImage
Image outImage
- The output image. It should have a size outHeight*outWidth*outDepth
outHeight
int outHeight
outWidth
int outWidth
outDepth
int outDepth
trans
Transformer trans
- The transformation from the output image to the input image.
x0
double x0
- Parameters of the transformation
y0
double y0
a00
double a00
a01
double a01
a10
double a10
a11
double a11
t2
double[] t2
- Temporaries that may be used in the conversion.
The use of these temporaries makes the Trasnformer classes non Thread safe.
These temporaries are used rather than creating new arrays for
multiple invocations.
t3
double[] t3
wcsScale
double wcsScale
- This includes a nominal 'scale' for the WCS. While this
can often be calculated from the transformation, that may sometimes
be difficult.
csys
CoordinateSystem csys
- The coordinate system used in the WCS.
proj
Projection proj
- The Projection used in the WCS.
distort
Distorter distort
- The linear distorter used in the WCS.
scale
Scaler scale
- The scaler used in the WCS.
headerNaxis
int[] headerNaxis
- The size of the image if a WCS is generated from a FIS header
stdWCS
boolean stdWCS
- Is this a standards WCS
wcsKeys
java.util.HashMap<K,V> wcsKeys
lonAxis
int lonAxis
- Which axis is the longitude
latAxis
int latAxis
- Which axis is the latitude
h
Header h
- The FITS header
Package skyview.geometry.csys |
epoch
double epoch
epoch
double epoch
elon
double elon
epoch
double epoch
epoch
double epoch
Package skyview.geometry.deedger |
deltas
double[][] deltas
- The matrix of edge shifts between images.
counts
int[][] counts
- The matrix of the number of edge pixels between two images
totalCount
int totalCount
- The total number of edge pixels
nImage
int nImage
- The number of candidate source images
inputs
Image[] inputs
- The source images
output
Image output
- The image whose edges are to be removed.
source
int[] source
- The array giving the source image for each pixel in the input image.
Note that we don't care about the actual source images -- we already
have the pixel values. We just want to locate where the edges are
and know how to group the pixels for later adjustments.
nx
int nx
- The dimesions of the image
ny
int ny
offsets
double[] offsets
- The additive adjustment to be made to the image.
deltas
double[][] deltas
- The matrix of edge shifts between images.
shifts
java.util.ArrayList<E>[][] shifts
- The arrays of edge pixels
counts
int[][] counts
- The matrix of the number of edge pixels between two images
totalCount
int totalCount
- The total number of edge pixels
nImage
int nImage
- The number of candidate source images
inputs
Image[] inputs
- The source images
output
Image output
- The image whose edges are to be removed.
source
int[] source
- The array giving the source image for each pixel in the input image.
Note that we don't care about the actual source images -- we already
have the pixel values. We just want to locate where the edges are
and know how to group the pixels for later adjustments.
nx
int nx
- The dimesions of the image
ny
int ny
offsets
double[] offsets
- The additive adjustment to be made to the image.
deltas
double[][] deltas
- The matrix of edge shifts between images.
shifts
java.util.ArrayList<E>[][] shifts
- The arrays of edge pixels
counts
int[][] counts
- The matrix of the number of edge pixels between two images
totalCount
int totalCount
- The total number of edge pixels
nImage
int nImage
- The number of candidate source images
rImage
int rImage
- The number of distinct DSS images
inputs
Image[] inputs
- The source images
output
Image output
- The image whose edges are to be removed.
source
int[] source
- The array giving the source image for each pixel in the input image.
Note that we don't care about the actual source images -- we already
have the pixel values. We just want to locate where the edges are
and know how to group the pixels for later adjustments.
nx
int nx
- The dimesions of the image
ny
int ny
offsets
double[] offsets
- The additive adjustment to be made to the image.
realImage
int[] realImage
- The index of the real image corresponding to the tile
in the inputs array.
counts
int[] counts
- The matrix of the number of edge pixels between two images
totalCount
int totalCount
- The total number of edge pixels
nImage
int nImage
- The number of candidate source images
inputs
Image[] inputs
- The source images
output
Image output
- The image whose edges are to be removed.
source
int[] source
- The array giving the source image for each pixel in the input image.
nx
int nx
- The dimesions of the image
ny
int ny
offsets
double[] offsets
- The additive adjustment to be made to the image.
Package skyview.geometry.distorter |
CONS2R
double CONS2R
COND2R
double COND2R
TWOPI
double TWOPI
TOLERANCE
double TOLERANCE
xmm
double xmm
ymm
double ymm
xy
double xy
x2
double x2
y2
double y2
x2y
double x2y
y2x
double y2x
x2y2
double x2y2
x4y4
double x4y4
x3
double x3
y3
double y3
x4
double x4
y4
double y4
plate_ra
double plate_ra
plate_dec
double plate_dec
plate_scale
double plate_scale
x_pixel_size
double x_pixel_size
y_pixel_size
double y_pixel_size
ppo_coeff
double[] ppo_coeff
x_coeff
double[] x_coeff
y_coeff
double[] y_coeff
x0
double x0
y0
double y0
scale
double scale
Package skyview.geometry.projecter |
Package skyview.geometry.sampler |
depthArray
double[] depthArray
drizzOffset
double drizzOffset
- Drizzle offset
drizzArea
double drizzArea
- Drizzle Area
tArea
double tArea
- The area (in original image pixels) overlapped by
the current pixel.
intensive
boolean intensive
- Is this an intensive quantity?
rcX0
double[] rcX0
rcX1
double[] rcX1
rcY0
double[] rcY0
rcY1
double[] rcY1
psX1
double[] psX1
psY1
double[] psY1
corners
double[][] corners
- Implement the sample function of the Sampler class.
This function samples a single pixel.
primary
Sampler primary
backup
Sampler backup
combo
java.lang.String combo
nLobe
int nLobe
- The number of lobes in the window
out
double[] out
coef
double coef
coef2
double coef2
xw
double[] xw
- Weights used internally
yw
double[] yw
out
double[] out
out
double[] out
zout
double[] zout
xmin
int xmin
ymin
int ymin
splineDegree
int splineDegree
- The order of the spline
image
double[] image
- A copy of the image that is transformed into
the spline coefficients
xWeight
double[] xWeight
yWeight
double[] yWeight
xIndex
int[] xIndex
yIndex
int[] yIndex
Package skyview.geometry.spheredistorter |
v
double[] v
- These two work arrays mean that this class is not
thread safe. If multiple threads are to be used each thread
needs its own coordinate system object.
t1
double[] t1
headless
boolean headless
gridScale
double gridScale
grid
Gridder grid
ip
ImageProcessor ip
nx
int nx
ny
int ny
bi
java.awt.image.BufferedImage bi
needRevert
boolean needRevert
userFont
java.awt.Font userFont
setUserFont
boolean setUserFont
output
Image output
dssData
int[][] dssData
directory
java.lang.String directory
plate
java.lang.String plate
subimageCount
int subimageCount
dssIndex
int[] dssIndex
fitsFile
java.lang.String fitsFile
fitsHeader
Header fitsHeader
wcs
WCS wcs
- The WCS describing the transformation from
the reference sphere to pixel coordinates.
data
double[] data
- The data in the image. It should have dimension nx*ny*nz
nx
int nx
- The dimensions of the image. In pixel space the image occupies 0-nx, 0-ny.
ny
int ny
- The dimensions of the image. In pixel space the image occupies 0-nx, 0-ny.
nz
int nz
- The number of planes in the image.
iName
java.lang.String iName
- An initial name
center
double[] center
corners
double[][] corners
realImage
Image realImage
- The image that we are proxying for.
If this is not null, we simple forward requests to this.
proxyImage
Image proxyImage
- The approximate image
currentImage
Image currentImage
- The image we are currently using
spell
java.lang.String spell
- The string the image factory needs to create the real image
files
java.lang.String[] files
XMLFile
java.lang.String XMLFile
- The XML file that defines the survey
surveySize
double surveySize
- The default size of images.
images
java.util.ArrayList<E> images
- The list of image strings
threads
java.util.ArrayList<E> threads
outputImage
Image outputImage
catalogs
java.lang.String[] catalogs
pixelsValid
boolean pixelsValid
cosRad
double cosRad
hasRad
boolean hasRad
centerUnit
double[] centerUnit
centerCoords
double[] centerCoords
pixLoc
java.util.ArrayList<E> pixLoc
symbols
java.util.ArrayList<E> symbols
ps
java.io.PrintStream ps