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A

abort() - Static method in class ij.Macro: Aborts the currently running macro or any plugin using IJ.run().
abort() - Static method in class ij.macro.Interpreter: Aborts currently running macro.
abortPaste() - Method in class ij.gui.Roi
ABOUT_MENU - Static variable in class ij.Menus
AboutBox - Class in ij.plugin: This plugin implements the Help/About ImageJ command by opening the about.jpg in ij.jar, scaling it 400% and adding some text.
AboutBox() - Constructor for class ij.plugin.AboutBox
ABS - Static variable in interface ij.macro.MacroConstants
abs() - Method in class ij.process.FloatProcessor
abs() - Method in class ij.process.ImageProcessor: If this is a 32-bit or signed 16-bit image, performs an absolute value transform, otherwise does nothing.
abs() - Method in class ij.process.ShortProcessor
accept(File, String) - Method in class ij.plugin.Compiler
ACOS - Static variable in interface ij.macro.MacroConstants
actionPerformed(ActionEvent) - Method in class ij.gui.GenericDialog
actionPerformed(ActionEvent) - Method in class ij.gui.HistogramWindow
actionPerformed(ActionEvent) - Method in class ij.gui.HTMLDialog
actionPerformed(ActionEvent) - Method in class ij.gui.MessageDialog
actionPerformed(ActionEvent) - Method in class ij.gui.PlotWindow
actionPerformed(ActionEvent) - Method in class ij.gui.SaveChangesDialog
actionPerformed(ActionEvent) - Method in class ij.gui.StackWindow
actionPerformed(ActionEvent) - Method in class ij.gui.Toolbar
actionPerformed(ActionEvent) - Method in class ij.gui.YesNoCancelDialog
actionPerformed(ActionEvent) - Method in class ij.ImageJ: Handle menu events.
actionPerformed(ActionEvent) - Method in class ij.plugin.filter.Calibrator
actionPerformed(ActionEvent) - Method in class ij.plugin.filter.Convolver
actionPerformed(ActionEvent) - Method in class ij.plugin.frame.ContrastAdjuster
actionPerformed(ActionEvent) - Method in class ij.plugin.frame.Editor
actionPerformed(ActionEvent) - Method in class ij.plugin.frame.Fitter
actionPerformed(ActionEvent) - Method in class ij.plugin.frame.Recorder
actionPerformed(ActionEvent) - Method in class ij.plugin.frame.RoiManager
actionPerformed(ActionEvent) - Method in class ij.plugin.frame.ThresholdAdjuster
actionPerformed(ActionEvent) - Method in class ij.plugin.LUT_Editor
actionPerformed(ActionEvent) - Method in class ij.plugin.MacroInstaller
actionPerformed(ActionEvent) - Method in class ij.text.TextPanel
actionPerformed(ActionEvent) - Method in class ij.text.TextWindow
add(ImageProcessor, double) - Method in class ij.plugin.filter.SaltAndPepper
add(ImagePlus, Roi, int) - Method in class ij.plugin.frame.RoiManager: Adds the specified ROI to the list.
ADD - Static variable in interface ij.process.Blitter: dst=dst+src
add(int) - Method in class ij.process.FloatProcessor
add(double) - Method in class ij.process.FloatProcessor
add(int) - Method in class ij.process.ImageProcessor: Adds 'value' to each pixel in the image or ROI.
add(double) - Method in class ij.process.ImageProcessor: Adds 'value' to each pixel in the image or ROI.
add(int) - Method in class ij.process.ShortProcessor
add(double) - Method in class ij.process.ShortProcessor
add(Object) - Method in interface nom.tam.util.Cursor: Add an unkeyed element to the collection.
add(Object, Object) - Method in interface nom.tam.util.Cursor: Add a keyed element to the collection.
add(Object) - Method in class nom.tam.util.HashedList: Add an element to the end of the list.
add(Object, Object) - Method in class nom.tam.util.HashedList: Add a keyed element to the end of the list.
add(int, Object, Object) - Method in class nom.tam.util.HashedList: Add an element to the list.
add(String, String) - Static method in class skyview.executive.Settings: Add a setting to a list -- but only if it is not already in the list.
add(Transformer) - Method in class skyview.geometry.Converter: Add a component to the transformation
add(Rotater) - Method in class skyview.geometry.Rotater: Add an additional rotation to the current rotation.
add(Scaler) - Method in class skyview.geometry.Scaler: Add a second affine transformation to this one and return the composite transformation.
add(int) - Method in class skyview.util.SmartIntArray: add element (integer) to array , check size and increase it if necessary
ADD_TO_MANAGER - Static variable in class ij.plugin.filter.ParticleAnalyzer: Add particles to ROI Manager.
addAll(Collection) - Method in class nom.tam.util.HashedList: Add another collection to this one list.
addArgs(String[]) - Static method in class skyview.executive.Settings: Add settings from a list of arguments.
addBatchModeImage(ImagePlus) - Static method in class ij.macro.Interpreter
addChar(char) - Method in class ij.gui.TextRoi: Adds the specified character to the end of the text string.
addCheckbox(String, boolean) - Method in class ij.gui.GenericDialog: Adds a checkbox.
addCheckboxGroup(int, int, String[], boolean[]) - Method in class ij.gui.GenericDialog: Adds a group of checkboxs using a grid layout.
addChoice(String, String[], String) - Method in class ij.gui.GenericDialog: Adds a popup menu.
addCircle(String, String, String) - Static method in class ij.gui.ShapeRoi
addColor(Color) - Method in class ij.process.ImageProcessor: Adds the color to the end of the color model if not already there.
addColor(Color, int) - Method in class ij.process.ImageProcessor: Adds the color to the color model at the specified index.
addColumn(Object) - Method in class nom.tam.fits.AsciiTable: Add a row to the table.
addColumn(Object, int) - Method in class nom.tam.fits.AsciiTable: This version of addColumn allows the user to override the default length associated with each column type.
addColumn(Object) - Method in class nom.tam.fits.AsciiTableHDU: Add a column
addColumn(Object) - Method in class nom.tam.fits.BinaryTable: Add a column to the end of a table.
addColumn(Object) - Method in class nom.tam.fits.BinaryTableHDU: Add a column without any associated header information.
addColumn(Object) - Method in interface nom.tam.fits.TableData
addColumn(Object) - Method in class nom.tam.fits.TableHDU
addColumn(Object, int) - Method in class nom.tam.util.ColumnTable: Add a column
addCriterion(String, String, String) - Method in class skyview.vo.ConeQuerier
addErrorBars(float[]) - Method in class ij.gui.Plot: Adds error bars to the plot.
addErrorBars(double[]) - Method in class ij.gui.Plot: Adds error bars to the plot.
addErrorBars(float[]) - Method in class ij.gui.PlotWindow: Adds error bars to the plot.
addFlattenedColumn(Object, int[]) - Method in class nom.tam.fits.BinaryTable: Add a column where the data is already flattened.
addHDU(BasicHDU) - Method in class nom.tam.fits.Fits: Add an HDU to the Fits object.
addImageListener(ImageListener) - Static method in class ij.ImagePlus
addKeyListener(KeyListener) - Method in class ij.text.TextPanel: Unused keyPressed events will be passed to 'listener'.
addLabel(double, double, String) - Method in class ij.gui.Plot: Draws text at the specified location, where (0,0) is the upper left corner of the the plot frame and (1,1) is the lower right corner.
addLabel(double, double, String) - Method in class ij.gui.PlotWindow: Draws a label.
addLabel(String, String) - Method in class ij.measure.ResultsTable: Adds a label to the beginning of the current row.
addLayoutComponent(String, Component) - Method in class ij.gui.ImageLayout: Not used by this class.
addLine(HeaderCard) - Method in class nom.tam.fits.Header: Add a card image to the header.
addLine(String) - Method in class nom.tam.fits.Header: Add a card image to the header.
addMacroTool(String, MacroInstaller, int) - Method in class ij.gui.Toolbar: Used by the MacroInstaller class to install macro tools.
addMessage(String) - Method in class ij.gui.GenericDialog: Adds a message consisting of one or more lines of text.
addNotify() - Method in class ij.gui.MultiLineLabel
addNumericField(String, double, int) - Method in class ij.gui.GenericDialog: Adds a numeric field.
addNumericField(String, double, int, int, String) - Method in class ij.gui.GenericDialog: Adds a numeric field.
addOffset() - Method in class ij.gui.PolygonRoi
addOpenRecentItem(String) - Static method in class ij.Menus: Adds a file path to the beginning of the File/Open Recent submenu.
addPadding(int) - Static method in class nom.tam.fits.FitsUtil: Total size of blocked FITS element
addPanel(Panel) - Method in class ij.gui.GenericDialog: Adds a Panel to the dialog.
addPanel(Panel, int, Insets) - Method in class ij.gui.GenericDialog: Adds a Panel to the dialog with custom contraint and insets.
addPlotString(String, double, double, double) - Method in class ij.process.ImageProcessor
addPoint(int, int) - Method in class ij.gui.PointRoi: Adds a point to this selection and return the result.
addPointer(Object) - Method in class nom.tam.util.ColumnTable
addPoints(float[], float[], int) - Method in class ij.gui.Plot: Adds a set of points to the plot or adds a curve if shape is set to LINE.
addPoints(double[], double[], int) - Method in class ij.gui.Plot: Adds a set of points to the plot using double arrays.
addPoints(float[], float[], int) - Method in class ij.gui.PlotWindow: Adds a set of points to the plot or adds a curve if shape is set to LINE.
addPoints(double[], double[], int) - Method in class ij.gui.PlotWindow: Adds a set of points to the plot using double arrays.
addRow(Object[]) - Method in class nom.tam.fits.AsciiTable: Add a row to the FITS table.
addRow(Object[]) - Method in class nom.tam.fits.BinaryTable: Add a row at the end of the table.
addRow(Object[]) - Method in interface nom.tam.fits.TableData
addRow(Object[]) - Method in class nom.tam.fits.TableHDU
addRow(Object[]) - Method in class nom.tam.util.ColumnTable: Add a row to the table.
addSlice(String, Object) - Method in class ij.ImageStack: Adds an image in the forma of a pixel array to the end of the stack.
addSlice(String, ImageProcessor) - Method in class ij.ImageStack: Adds the image in 'ip' to the end of the stack.
addSlice(String, ImageProcessor, int) - Method in class ij.ImageStack: Adds the image in 'ip' to the stack following slice 'n'.
addSlider(String, double, double, double) - Method in class ij.gui.GenericDialog
addStringField(String, String) - Method in class ij.gui.GenericDialog: Adds an 8 column text field.
addStringField(String, String, int) - Method in class ij.gui.GenericDialog: Adds a text field.
addTextAreas(String, String, int, int) - Method in class ij.gui.GenericDialog: Adds one or two (side by side) text areas.
addToManager - Variable in class ij.plugin.filter.ParticleAnalyzer
addTool(String) - Method in class ij.gui.Toolbar: Adds a tool to the toolbar.
addUnsignedShortSlice(String, Object) - Method in class ij.ImageStack: Obsolete.
addValue(int, double) - Method in class ij.measure.ResultsTable: Adds a value to the end of the given column.
addValue(String, double) - Method in class ij.measure.ResultsTable: Adds a value to the end of the given column.
addValue(String, boolean, String) - Method in class nom.tam.fits.BasicHDU: Add information to the header
addValue(String, int, String) - Method in class nom.tam.fits.BasicHDU
addValue(String, double, String) - Method in class nom.tam.fits.BasicHDU
addValue(String, String, String) - Method in class nom.tam.fits.BasicHDU
addValue(String, boolean, String) - Method in class nom.tam.fits.Header: Add or replace a key with the given boolean value and comment.
addValue(String, double, String) - Method in class nom.tam.fits.Header: Add or replace a key with the given double value and comment.
addValue(String, String, String) - Method in class nom.tam.fits.Header: Add or replace a key with the given string value and comment.
addValue(String, long, String) - Method in class nom.tam.fits.Header: Add or replace a key with the given long value and comment.
addWindow(Frame) - Static method in class ij.WindowManager: Adds the specified window to the Window menu.
adjustCoordX(double) - Static method in class skyview.util.Utilities: Ensure that a value is in the region -PI to PI.
adjustCoordY(double) - Static method in class skyview.util.Utilities: Ensure that a value is in the approrpiate range from -PI/2 to PI/2.
adjustmentValueChanged(AdjustmentEvent) - Method in class ij.gui.ColorChooser
adjustmentValueChanged(AdjustmentEvent) - Method in class ij.gui.GenericDialog
adjustmentValueChanged(AdjustmentEvent) - Method in class ij.gui.StackWindow
adjustmentValueChanged(AdjustmentEvent) - Method in class ij.plugin.frame.ContrastAdjuster
adjustmentValueChanged(AdjustmentEvent) - Method in class ij.plugin.frame.LineWidthAdjuster
adjustmentValueChanged(AdjustmentEvent) - Method in class ij.plugin.frame.ThresholdAdjuster
adjustmentValueChanged(AdjustmentEvent) - Method in class ij.text.TextPanel
AitProjecter - Class in skyview.geometry.projecter: This class implements the AIT (Hammer-Aitov) projection.
AitProjecter() - Constructor for class skyview.geometry.projecter.AitProjecter
AitProjecter.AitDeprojecter - Class in skyview.geometry.projecter
AitProjecter.AitDeprojecter() - Constructor for class skyview.geometry.projecter.AitProjecter.AitDeprojecter
alignFill(byte[], int, int) - Method in class nom.tam.util.ByteFormatter: Fill the buffer with blanks to align a field.
ALL_KEYS - Static variable in class ij.IJ
allSurveys() - Static method in class skyview.survey.XMLSurveyDescription
altKeyDown() - Static method in class ij.IJ: Returns true if the alt key is down.
analyze(ImagePlus) - Method in class ij.plugin.filter.LineGraphAnalyzer: Uses ImageJ's particle analyzer to extract a set of coordinate pairs from a digitized line graph.
analyze(ImagePlus) - Method in class ij.plugin.filter.ParticleAnalyzer: Performs particle analysis on the specified image.
analyze(ImagePlus, ImageProcessor) - Method in class ij.plugin.filter.ParticleAnalyzer: Performs particle analysis on the specified ImagePlus and ImageProcessor.
Analyzer - Class in ij.plugin.filter: This plugin implements ImageJ's Analyze/Measure and Analyze/Set Measurements commands.
Analyzer() - Constructor for class ij.plugin.filter.Analyzer
Analyzer(ImagePlus) - Constructor for class ij.plugin.filter.Analyzer: Constructs a new Analyzer using the specified ImagePlus object and the system-wide measurement options and results table.
Analyzer(ImagePlus, int, ResultsTable) - Constructor for class ij.plugin.filter.Analyzer: Construct a new Analyzer using an ImagePlus object and private measurement options and results table.
analyzer - Variable in class ij.plugin.filter.ParticleAnalyzer
and(ShapeRoi) - Method in class ij.gui.ShapeRoi: Unary intersection operator.
AND - Static variable in interface ij.process.Blitter: dst=dst AND src
and(int) - Method in class ij.process.FloatProcessor
and(int) - Method in class ij.process.ImageProcessor: Binary AND of each pixel in the image or ROI with 'value'.
and(int) - Method in class ij.process.ShortProcessor
ANGLE - Static variable in class ij.gui.Roi
ANGLE - Static variable in class ij.gui.Toolbar
ANGLE - Static variable in class ij.measure.ResultsTable
angle - Variable in class ij.process.EllipseFitter: Angle in degrees
angle - Variable in class ij.process.ImageStatistics: Angle in degrees of fitted ellipse
AngScale - Class in skyview.data: Find an appropriate delta to use for getting grid intervals.
AngScale() - Constructor for class skyview.data.AngScale
angstromSymbol - Static variable in class ij.IJ
angularDistance(double, double, double, double) - Static method in class skyview.util.Utilities: Calculates angular distance between two points on a sphere.
Animator - Class in ij.plugin: This plugin animates stacks.
Animator() - Constructor for class ij.plugin.Animator
antialiasedText - Static variable in class ij.Prefs: No longer used
antialiasedText - Variable in class ij.process.ImageProcessor
antialiasedTools - Static variable in class ij.Prefs: Draw tool icons using antialiasing.
append(String) - Method in class ij.plugin.frame.Editor
append(String) - Method in class ij.text.TextPanel: Adds one or more lines to the end of this TextPanel.
append(String) - Method in class ij.text.TextWindow: Adds one or lines of text to the window.
appendLine(String) - Method in class ij.text.TextPanel: Adds a single line to the end of this TextPanel.
applyLut() - Method in class ij.process.ByteProcessor
applyTable(int[]) - Method in class ij.process.ByteProcessor
applyTable(int[]) - Method in class ij.process.ColorProcessor
applyTable(int[], int) - Method in class ij.process.ColorProcessor
applyTable(int[]) - Method in class ij.process.FloatProcessor
applyTable(int[]) - Method in class ij.process.ImageProcessor: Transforms the image or ROI using a lookup table.
applyTable(int[]) - Method in class ij.process.ShortProcessor: Transforms the pixel data using a 65536 entry lookup table.
applyTable(int[]) - Method in class ij.process.StackProcessor
ArcProjecter - Class in skyview.geometry.projecter
ArcProjecter() - Constructor for class skyview.geometry.projecter.ArcProjecter
ArcProjecter.ArcDeprojecter - Class in skyview.geometry.projecter
ArcProjecter.ArcDeprojecter() - Constructor for class skyview.geometry.projecter.ArcProjecter.ArcDeprojecter
AREA - Static variable in interface ij.measure.Measurements
AREA - Static variable in class ij.measure.ResultsTable
area - Variable in class ij.process.ImageStatistics
AREA_FRACTION - Static variable in interface ij.measure.Measurements
AREA_FRACTION - Static variable in class ij.measure.ResultsTable
areaFraction - Variable in class ij.process.ImageStatistics
ARGB - Static variable in class ij.io.FileInfo: 32-bit interleaved ARGB.
ARRAY - Static variable in interface ij.macro.MacroConstants
ARRAY_FUNCTION - Static variable in interface ij.macro.MacroConstants
ArrayDataInput - Interface in nom.tam.util
ArrayDataOutput - Interface in nom.tam.util
arrayDescription(Object) - Static method in class nom.tam.util.ArrayFuncs: Generate a description of an array (presumed rectangular).
arrayEquals(Object, Object) - Static method in class nom.tam.util.ArrayFuncs: Are two objects equal? Arrays have the standard object equals method which only returns true if the two object are the same.
arrayEquals(Object, Object, double, double) - Static method in class nom.tam.util.ArrayFuncs: Are two objects equal? Arrays have the standard object equals method which only returns true if the two object are the same.
ArrayFuncs - Class in nom.tam.util: This is a package of static functions which perform computations on arrays.
ArrayFuncs() - Constructor for class nom.tam.util.ArrayFuncs
ArrayFuncsTest - Class in nom.tam.util.test
ArrayFuncsTest(String) - Constructor for class nom.tam.util.test.ArrayFuncsTest
ArrayFuncsTest.CloneTest - Class in nom.tam.util.test
ArrayFuncsTest.CloneTest() - Constructor for class nom.tam.util.test.ArrayFuncsTest.CloneTest
ArrayFuncsTester - Class in nom.tam.util.test
ArrayFuncsTester() - Constructor for class nom.tam.util.test.ArrayFuncsTester
arrayFunctionIDs - Static variable in interface ij.macro.MacroConstants
arrayFunctions - Static variable in interface ij.macro.MacroConstants
AsciiTable - Class in nom.tam.fits: An ASCII table.
AsciiTable(Header) - Constructor for class nom.tam.fits.AsciiTable: Create an ASCII table given a header
AsciiTable() - Constructor for class nom.tam.fits.AsciiTable: Create an empty ASCII table
AsciiTableHDU - Class in nom.tam.fits: FITS ASCII table header/data unit
AsciiTableHDU(Header, Data) - Constructor for class nom.tam.fits.AsciiTableHDU: Create an ascii table header/data unit.
AsciiTableTester - Class in nom.tam.fits.test: This class tests the AsciiTableHDU and AsciiTable FITS classes and implicitly the ByteFormatter and ByteParser classes in the nam.tam.util library.
AsciiTableTester() - Constructor for class nom.tam.fits.test.AsciiTableTester
ASIN - Static variable in interface ij.macro.MacroConstants
ATAN - Static variable in interface ij.macro.MacroConstants
ATAN2 - Static variable in interface ij.macro.MacroConstants
AUTO_UPDATE - Static variable in interface ij.macro.MacroConstants
autoClose - Static variable in class ij.gui.PlotWindow: Automatically close window after saving values.
autoOutline(int, int) - Method in class ij.gui.Wand: Traces the boundary of an area of uniform color, where 'startX' and 'startY' are somewhere inside the area.
autoOutline(int, int, double, double) - Method in class ij.gui.Wand: Traces an object defined by lower and upper threshold values.
autoOutline(int, int, int, int) - Method in class ij.gui.Wand: This is a variation of autoOutline that uses int threshold arguments.
autotest() - Static method in class nom.tam.fits.FitsDate
autoThreshold() - Method in class ij.process.ColorProcessor
autoThreshold() - Method in class ij.process.FloatProcessor: Not implemented.
autoThreshold() - Method in class ij.process.ImageProcessor: Converts the image to binary using an automatically determined threshold.
AVERAGE - Static variable in interface ij.process.Blitter: dst=(dst+src)/2
average3dData(double[][]) - Static method in class skyview.util.Utilities: Average a 2-D array over it's first dimension.
AVG_METHOD - Static variable in class ij.plugin.ZProjector
AVIWriter - Class in ij.plugin.filter: This plugin saves stacks in AVI format.
AVIWriter() - Constructor for class ij.plugin.filter.AVIWriter

B

B1950 - Static variable in class skyview.geometry.CoordinateSystem: Standard B1950 coordinates
backgroundColor - Static variable in class ij.ImageJ
backgroundIsZero - Variable in class ij.plugin.filter.BinaryFiller
BackgroundSubtracter - Class in ij.plugin.filter: Implements ImageJ's Subtract Background command.
BackgroundSubtracter() - Constructor for class ij.plugin.filter.BackgroundSubtracter
backup - Variable in class skyview.geometry.sampler.ComboSampler
BackupMosaicker - Class in skyview.process: This mosaicker is used to create a mosaic where if there are pixels unfilled by the primary survey one or more secondary surveys are invoked to fill them.
BackupMosaicker() - Constructor for class skyview.process.BackupMosaicker
BadHeaderException - Exception in nom.tam.fits: This exception indicates that an error was detected while parsing a FITS header record.
BadHeaderException() - Constructor for exception nom.tam.fits.BadHeaderException
BadHeaderException(String) - Constructor for exception nom.tam.fits.BadHeaderException
BARG - Static variable in class ij.io.FileInfo: 32-bit interleaved BARG (MCID).
baseCM - Variable in class ij.process.ImageProcessor
BasicHDU - Class in nom.tam.fits: This abstract class is the parent of all HDU types.
BasicHDU() - Constructor for class nom.tam.fits.BasicHDU
BasicTester - Class in skyview.test: This class does basic testing of the features of the SkyView JAR.
BasicTester() - Constructor for class skyview.test.BasicTester
Batch - Class in skyview.executive
Batch() - Constructor for class skyview.executive.Batch
BCOLOR - Static variable in class ij.Prefs
beep() - Static method in class ij.IJ: Emits an audio beep.
BEEP - Static variable in interface ij.macro.MacroConstants
Benchmark - Class in ij.plugin.filter: Implements the Plugins/Utilities/Run Benchmark command.
Benchmark() - Constructor for class ij.plugin.filter.Benchmark
BesselianCoordinateSystem - Class in skyview.geometry.csys: This class implements Besselian coordinate systems.
BesselianCoordinateSystem(double) - Constructor for class skyview.geometry.csys.BesselianCoordinateSystem: Get a CoordinateSystem of a given epoch.
BesselianDistorter - Class in skyview.geometry.spheredistorter: This class implements the distortion of Besselian coordinate systems.
BesselianDistorter() - Constructor for class skyview.geometry.spheredistorter.BesselianDistorter
BesselianDistorter.BesselianInverseDistorter - Class in skyview.geometry.spheredistorter: This inner class defines the inverse distortion to the enclosing Besselian distorter.
BesselianDistorter.BesselianInverseDistorter() - Constructor for class skyview.geometry.spheredistorter.BesselianDistorter.BesselianInverseDistorter
bestFit(int, boolean[], boolean) - Method in class skyview.process.imagefinder.Border: Find the best image to use for a given unit vector.
bestFit(int, boolean[]) - Method in class skyview.process.imagefinder.Checker: Find the best image to use for a given unit vector.
bestFit(int, boolean[], boolean) - Method in class skyview.process.imagefinder.Radius: Find the best image to use for a given unit vector.
bestFit(int, boolean[]) - Method in class skyview.sia.Checker: Find the best image to use for a given unit vector.
BGR - Static variable in class ij.io.FileInfo: 24-bit interleaved BGR.
bin0 - Variable in class skyview.executive.Imager: The beginning of the first pixel in energy space.
Binary - Class in ij.plugin.filter: Implements the commands in the Process/Binary submenu.
Binary() - Constructor for class ij.plugin.filter.Binary
BinaryFiller - Class in ij.plugin.filter: Binary Fill (Process/Binary/Fill) by Gabriel Landini, G.Landini at bham.ac.uk.
BinaryFiller() - Constructor for class ij.plugin.filter.BinaryFiller
BinaryProcessor - Class in ij.process: This class processes binary images.
BinaryProcessor(ByteProcessor) - Constructor for class ij.process.BinaryProcessor: Creates a BinaryProcessor from a ByteProcessor.
BinaryTable - Class in nom.tam.fits: This class defines the methods for accessing FITS binary table data.
BinaryTable() - Constructor for class nom.tam.fits.BinaryTable: Create a null binary table data segment.
BinaryTable(Header) - Constructor for class nom.tam.fits.BinaryTable: Create a binary table from given header information.
BinaryTable(Object[][]) - Constructor for class nom.tam.fits.BinaryTable: Create a binary table from existing data in row order.
BinaryTable(Object[]) - Constructor for class nom.tam.fits.BinaryTable: Create a binary table from existing data in column order.
BinaryTable(ColumnTable) - Constructor for class nom.tam.fits.BinaryTable: Create a binary table from an existing ColumnTable
BinaryTableHDU - Class in nom.tam.fits: FITS binary table header/data unit
BinaryTableHDU(Header, Data) - Constructor for class nom.tam.fits.BinaryTableHDU
BinaryTableTester - Class in nom.tam.fits.test: This class tests the binary table classes for the Java FITS library, notably BinaryTableHDU, BinaryTable, FitsHeap and the utility class ColumnTable.
BinaryTableTester() - Constructor for class nom.tam.fits.test.BinaryTableTester
binSize - Variable in class ij.process.ImageStatistics
BIT_DEPTH - Static variable in interface ij.macro.MacroConstants
BitBuffer - Class in ij.io: A class for reading arbitrary numbers of bits from a byte array.
BitBuffer(byte[]) - Constructor for class ij.io.BitBuffer
BITMAP - Static variable in class ij.io.FileInfo: 1-bit black and white.
BITPIX_BYTE - Static variable in class nom.tam.fits.BasicHDU
BITPIX_DOUBLE - Static variable in class nom.tam.fits.BasicHDU
BITPIX_FLOAT - Static variable in class nom.tam.fits.BasicHDU
BITPIX_INT - Static variable in class nom.tam.fits.BasicHDU
BITPIX_LONG - Static variable in class nom.tam.fits.BasicHDU
BITPIX_SHORT - Static variable in class nom.tam.fits.BasicHDU
BITS_PER_SAMPLE - Static variable in class ij.io.TiffDecoder
BLACK - Static variable in class ij.process.ImageProcessor: Value of pixels included in masks.
BLACK_AND_WHITE_LUT - Static variable in class ij.process.ImageProcessor
blackBackground - Static variable in class ij.Prefs: Backgound is black in binary images
blackCanvas - Static variable in class ij.Prefs: Use black image border.
Blitter - Interface in ij.process: ImageJ bit blitting classes must implement this interface.
blue - Variable in class ij.plugin.filter.RGBStackSplitter: These are the three stacks created by the split(ImageStack) method.
blues - Variable in class ij.io.FileInfo
blur(ImageProcessor, double) - Method in class ij.plugin.filter.GaussianBlur
blur(ImageProcessor, int) - Method in class ij.plugin.filter.RankFilters
blurRGB(ImageProcessor, float[]) - Method in class ij.plugin.filter.GaussianBlur
bLUT1 - Variable in class ij.process.ImageProcessor
bLUT2 - Variable in class ij.process.ImageProcessor
BMP - Static variable in class ij.io.FileInfo
BMP - Static variable in class ij.io.Opener
BMP_Reader - Class in ij.plugin: This plugin reads BMP files.
BMP_Reader() - Constructor for class ij.plugin.BMP_Reader
BMP_Writer - Class in ij.plugin: Implements the File/Save As/BMP command.
BMP_Writer() - Constructor for class ij.plugin.BMP_Writer
boldFont - Variable in class ij.process.ImageProcessor
BOOLEAN_INDEX - Static variable in interface nom.tam.util.PrimitiveInfo
Border - Class in skyview.process.imagefinder: This class finds the best images to be used for sampling using a recursive rectangle algorithm.
Border() - Constructor for class skyview.process.imagefinder.Border
BOTTOM_MARGIN - Static variable in class ij.gui.Plot: the margin width below the plot frame
BoundaryAverage - Class in skyview.process.deedger: This class adjusts the 0 point for data taken from multiple images to try to minize edge effects.
BoundaryAverage() - Constructor for class skyview.process.deedger.BoundaryAverage
BoundaryMedian - Class in skyview.process.deedger: This class adjusts the 0 point for data taken from multiple images to try to minize edge effects.
BoundaryMedian() - Constructor for class skyview.process.deedger.BoundaryMedian
BoundaryMedianDSS2 - Class in skyview.process.deedger: This class adjusts the 0 point for data taken from multiple images to try to minize edge effects.
BoundaryMedianDSS2() - Constructor for class skyview.process.deedger.BoundaryMedianDSS2
bounds - Variable in class skyview.geometry.Sampler: This gives the minX,maxX, minY,maxY pixel values for the current output image.
BOX - Static variable in class ij.gui.Plot: Display points using an box-shaped mark.
BOX - Static variable in class ij.gui.PlotWindow: Display points using an box-shaped mark.
BoxSmoother - Class in skyview.data: Do a box car smoothing of an image
BoxSmoother() - Constructor for class skyview.data.BoxSmoother
BrowserLauncher - Class in ij.plugin: This plugin implements the File/Import/URL command and the commands in the Help menu that open web pages.
BrowserLauncher() - Constructor for class ij.plugin.BrowserLauncher
BufferedDataInputStream - Class in nom.tam.util: This class is intended for high performance I/O in scientific applications.
BufferedDataInputStream(InputStream) - Constructor for class nom.tam.util.BufferedDataInputStream: Use the BufferedInputStream constructor
BufferedDataInputStream(InputStream, int) - Constructor for class nom.tam.util.BufferedDataInputStream: Use the BufferedInputStream constructor
BufferedDataOutputStream - Class in nom.tam.util: This class is intended for high performance I/O in scientific applications.
BufferedDataOutputStream(OutputStream) - Constructor for class nom.tam.util.BufferedDataOutputStream: Use the BufferedOutputStream constructor
BufferedDataOutputStream(OutputStream, int) - Constructor for class nom.tam.util.BufferedDataOutputStream: Use the BufferedOutputStream constructor
BufferedFile - Class in nom.tam.util
BufferedFile(String) - Constructor for class nom.tam.util.BufferedFile: Create a read-only buffered file
BufferedFile(String, String) - Constructor for class nom.tam.util.BufferedFile: Create a buffered file with the given mode.
BufferedFile(File) - Constructor for class nom.tam.util.BufferedFile: Create a buffered file from a File descriptor
BufferedFile(File, String) - Constructor for class nom.tam.util.BufferedFile: Create a buffered file from a File descriptor
BufferedFile(String, String, int) - Constructor for class nom.tam.util.BufferedFile: Create a buffered file with the given mode and a specified buffer size.
BufferedFile(File, String, int) - Constructor for class nom.tam.util.BufferedFile: Create a buffered file from a file descriptor
bufferedFileTest(String, int, double[], double[], float[], float[], long[], long[], int[], int[], short[], short[], char[], char[], byte[], byte[], boolean[], boolean[], int[][][][], int[][][][]) - Static method in class nom.tam.util.test.BufferedFileTester
BufferedFileTester - Class in nom.tam.util.test: This class provides runs tests of the BufferedI/O classes: BufferedFile, BufferedDataInputStream and BufferedDataOutputStream.
BufferedFileTester() - Constructor for class nom.tam.util.test.BufferedFileTester
bufferedStreamTest(String, int, double[], double[], float[], float[], long[], long[], int[], int[], short[], short[], char[], char[], byte[], byte[], boolean[], boolean[], int[][][][], int[][][][]) - Static method in class nom.tam.util.test.BufferedFileTester
buffStreamSimpleTest(String, int, int[], int[]) - Static method in class nom.tam.util.test.BufferedFileTester
buildByColumn() - Method in class nom.tam.fits.test.BinaryTableTester
buildByRow() - Method in class nom.tam.fits.test.BinaryTableTester
buildControlDialog(int, int) - Method in class ij.plugin.ZProjector: Builds dialog to query users for projection parameters.
button - Variable in class ij.gui.MessageDialog
BYTE_INDEX - Static variable in interface nom.tam.util.PrimitiveInfo
byteArrayToStrings(byte[], int) - Static method in class nom.tam.fits.FitsUtil: Convert bytes to Strings
ByteBlitter - Class in ij.process: This class does bit blitting of byte images.
ByteBlitter(ByteProcessor) - Constructor for class ij.process.ByteBlitter: Constructs a ByteBlitter from a ByteProcessor.
ByteFormatParseTester - Class in nom.tam.util.test
ByteFormatParseTester() - Constructor for class nom.tam.util.test.ByteFormatParseTester
ByteFormatter - Class in nom.tam.util: This class provides mechanisms for efficiently formatting numbers and Strings.
ByteFormatter() - Constructor for class nom.tam.util.ByteFormatter
ByteParser - Class in nom.tam.util: This class provides routines for efficient parsing of data stored in a byte array.
ByteParser(byte[]) - Constructor for class nom.tam.util.ByteParser: Construct a parser.
ByteProcessor - Class in ij.process: This is an 8-bit image and methods that operate on that image.
ByteProcessor(Image) - Constructor for class ij.process.ByteProcessor: Creates a ByteProcessor from an 8-bit, indexed color AWT Image.
ByteProcessor(int, int) - Constructor for class ij.process.ByteProcessor: Creates a blank ByteProcessor of the specified dimensions.
ByteProcessor(int, int, byte[], ColorModel) - Constructor for class ij.process.ByteProcessor: Creates a ByteProcessor from a pixel array and IndexColorModel.
ByteStatistics - Class in ij.process: 8-bit image statistics, including histogram.
ByteStatistics(ImageProcessor) - Constructor for class ij.process.ByteStatistics: Construct an ImageStatistics object from a ByteProcessor using the standard measurement options (area, mean, mode, min and max) and no calibration.
ByteStatistics(ImageProcessor, int, Calibration) - Constructor for class ij.process.ByteStatistics: Constructs a ByteStatistics object from a ByteProcessor using the specified measurement and calibration.

C

c - Variable in class skyview.executive.Imager: The CoordinateSystem object for the output image.
c2hex(Color) - Static method in class ij.util.Tools: Converts a Color to an 7 byte hex string starting with '#'.
cache - Variable in class ij.io.PluginClassLoader
cachedMask - Variable in class ij.gui.Roi
CachingImageFactory - Class in skyview.survey
CachingImageFactory() - Constructor for class skyview.survey.CachingImageFactory
cal - Variable in class ij.gui.HistogramWindow
cal - Variable in class ij.process.ImageStatistics
calculate(String, ImagePlus, ImagePlus) - Method in class ij.plugin.ImageCalculator
CALCULATOR - Static variable in interface ij.macro.MacroConstants
CALIBRATE - Static variable in interface ij.macro.MacroConstants
calibrate(ImagePlus) - Method in class ij.plugin.filter.Calibrator
calibrated() - Method in class ij.measure.Calibration: Returns true if this image is density calibrated.
Calibration - Class in ij.measure: Calibration objects contain an image's spatial and density calibration data.
Calibration(ImagePlus) - Constructor for class ij.measure.Calibration: Constructs a new Calibration object using the default values.
Calibration() - Constructor for class ij.measure.Calibration: Constructs a new Calibration object using the default values.
CalibrationBar - Class in ij.plugin.filter: This plugin displays a calibration bar on the active image.
CalibrationBar() - Constructor for class ij.plugin.filter.CalibrationBar
calibrationFunction - Variable in class ij.io.FileInfo
Calibrator - Class in ij.plugin.filter: Implements the Analyze/Calibrate command.
Calibrator() - Constructor for class ij.plugin.filter.Calibrator
CALL - Static variable in interface ij.macro.MacroConstants
canBePrimary() - Method in class nom.tam.fits.ImageHDU: Indicate that Images can appear at the beginning of a FITS dataset
canBePrimary() - Method in class nom.tam.fits.RandomGroupsHDU: Indicate that a RandomGroupsHDU can come at the beginning of a FITS file.
CANCELED - Static variable in class ij.IJ
cancelPressed() - Method in class ij.gui.SaveChangesDialog: Returns true if the user dismissed dialog by pressing "Cancel".
cancelPressed() - Method in class ij.gui.YesNoCancelDialog: Returns true if the user dismissed dialog by pressing "Cancel".
cand - Variable in class skyview.executive.Imager: The candidate images for use in resampling
canEnlarge(int, int) - Method in class ij.gui.ImageCanvas
CanvasResizer - Class in ij.plugin: This plugin implements the Image/Adjust/Canvas Size command.
CanvasResizer() - Constructor for class ij.plugin.CanvasResizer
CarProjecter - Class in skyview.geometry.projecter: This class implements the Cartesian (rectangular) projection.
CarProjecter() - Constructor for class skyview.geometry.projecter.CarProjecter
CarProjecter.CarDeprojecter - Class in skyview.geometry.projecter
CarProjecter.CarDeprojecter() - Constructor for class skyview.geometry.projecter.CarProjecter.CarDeprojecter
CatalogPostProcessor - Class in skyview.vo: The CatalogPostProcessor is called to finish processing for catalog requests.
CatalogPostProcessor() - Constructor for class skyview.vo.CatalogPostProcessor
CatalogProcessor - Class in skyview.vo
CatalogProcessor() - Constructor for class skyview.vo.CatalogProcessor
center(Window) - Static method in class ij.gui.GUI: Positions the specified frame in the center of the screen.
center - Variable in class ij.gui.Roi
CENTER_JUSTIFY - Static variable in class ij.process.ImageProcessor: Center justify text.
CENTER_OF_MASS - Static variable in interface ij.measure.Measurements
centerNextImage() - Static method in class ij.gui.ImageWindow: Causes the next image to be opened to be centered on the screen and displayed without informational text above the image.
centers - Variable in class skyview.process.imagefinder.Radius
CENTROID - Static variable in interface ij.measure.Measurements
CGIInitiator - Class in skyview.request: This class initiates a SkyView request from CGI.
CGIInitiator() - Constructor for class skyview.request.CGIInitiator
CHANGE_VALUES - Static variable in interface ij.macro.MacroConstants
changeFont(Font) - Method in class ij.gui.Plot: Changes the font.
changeFont(Font) - Method in class ij.gui.PlotWindow: Changes the font.
changes - Variable in class ij.ImagePlus: True if any changes have been made to this image.
CHAR_CODE_AT - Static variable in interface ij.macro.MacroConstants
CHAR_INDEX - Static variable in interface nom.tam.util.PrimitiveInfo
CHECK_AVAILABLE_MEMORY - Static variable in class ij.gui.NewImage
checkArrayConsistency(Object[], int[]) - Method in class nom.tam.util.ColumnTable: Check that the columns and sizes are consistent.
checkbox - Variable in class ij.gui.GenericDialog
checkBuf(int) - Method in class nom.tam.util.BufferedDataOutputStream
Checker - Class in skyview.process.imagefinder: This class sees if any pixels have coverage.
Checker() - Constructor for class skyview.process.imagefinder.Checker
Checker - Class in skyview.sia: This class sees if any pixels have coverage.
Checker() - Constructor for class skyview.sia.Checker
checkForDuplicateName - Static variable in class ij.WindowManager
checkNaNs - Variable in class skyview.process.imagefinder.Border: Do we wish to check that the input image does not have a NaN value?
checkNaNs - Variable in class skyview.process.imagefinder.Checker: Do we wish to check that the input image does not have a NaN value?
checkNaNs - Variable in class skyview.sia.Checker: Do we wish to check that the input image does not have a NaN value?
checkUpdateSettings() - Method in class skyview.executive.Imager
checkURLEnd(String) - Static method in class skyview.vo.ConeQuerier: Make sure that URLs can be appended to
choice - Variable in class ij.gui.GenericDialog
CIRCLE - Static variable in class ij.gui.Plot: Display points using a circle 5 pixels in diameter.
CIRCLE - Static variable in class ij.gui.PlotWindow: Display points using a circle 5 pixels in diameter.
CIRCULARITY - Static variable in interface ij.measure.Measurements
CIRCULARITY - Static variable in class ij.measure.ResultsTable
ClassChecker - Class in ij.plugin: Checks for duplicate class files in the plugins directory and deletes older duplicates.
ClassChecker() - Constructor for class ij.plugin.ClassChecker
classes - Static variable in interface nom.tam.util.PrimitiveInfo: Classes of the primitives.
clear(ImageProcessor) - Method in class ij.plugin.filter.Filler
clear() - Method in class ij.text.TextPanel: Deletes all the lines.
clear() - Method in class nom.tam.util.HashedList: Clear the collection
CLEAR_WORKSHEET - Static variable in class ij.plugin.filter.ParticleAnalyzer: Clear ImageJ console before starting.
clearData() - Method in class skyview.survey.DSSImage: Clear the data array
clearData() - Method in class skyview.survey.Image: Clear the data array
clearData() - Method in class skyview.survey.ProxyImage: Clear the data array
clearImageCache() - Method in class skyview.executive.Imager
clearOutside(ImageProcessor) - Method in class ij.plugin.filter.Filler
clearPlotStrings() - Method in class ij.process.ImageProcessor
clearRequests() - Static method in class skyview.vo.CatalogProcessor: Empty the request hash
clearSelection() - Method in class ij.text.TextPanel: Deletes the selected lines.
clipboard - Variable in class ij.gui.Roi
Clipboard - Class in ij.plugin: Copies and pastes images to the clipboard.
Clipboard() - Constructor for class ij.plugin.Clipboard
clipHeight - Variable in class ij.gui.Roi
ClipSampler - Class in skyview.geometry.sampler: The class implements a fast flux conserving resampling based on the Sutherland-Hodgman clipping algorithm.
ClipSampler() - Constructor for class skyview.geometry.sampler.ClipSampler
clipWidth - Variable in class ij.gui.Roi
clipX - Variable in class ij.gui.Roi
clipXMax - Variable in class ij.process.ImageProcessor
clipXMin - Variable in class ij.process.ImageProcessor
clipY - Variable in class ij.gui.Roi
clipYMax - Variable in class ij.process.ImageProcessor
clipYMin - Variable in class ij.process.ImageProcessor
clone() - Method in class ij.gui.PolygonRoi: Returns a copy of this PolygonRoi.
clone() - Method in class ij.gui.Roi: Returns a copy of this roi.
clone() - Method in class ij.gui.ShapeRoi: Returns a deep copy of this.
clone() - Method in class ij.measure.Calibration
clone() - Method in class ij.measure.ResultsTable: Creates a copy of this ResultsTable.
clone() - Method in class nom.tam.util.test.ArrayFuncsTest.CloneTest
close() - Method in class ij.gui.ImageWindow: Removes this window from the window list and disposes of it.
close() - Method in class ij.gui.StackWindow
close() - Method in class ij.ImagePlus: Closes this image and sets the pixel arrays to null.
close() - Method in class ij.io.RandomAccessStream
CLOSE - Static variable in interface ij.macro.MacroConstants
close() - Method in class ij.plugin.frame.ContrastAdjuster: Overrides close() in PlugInFrame.
close() - Method in class ij.plugin.frame.Editor: Overrides close() in PlugInFrame.
close() - Method in class ij.plugin.frame.LineWidthAdjuster: Overrides close() in PlugInFrame.
close() - Method in class ij.plugin.frame.PasteController
close() - Method in class ij.plugin.frame.PlugInFrame: Closes this window.
close() - Method in class ij.plugin.frame.Recorder
close() - Method in class ij.plugin.frame.RoiManager: Overrides PlugInFrame.close().
close() - Method in class ij.plugin.frame.ThresholdAdjuster: Overrides close() in PlugInFrame.
close() - Method in class ij.text.TextWindow
close() - Method in interface nom.tam.util.ArrayDataInput
close() - Method in interface nom.tam.util.ArrayDataOutput
close() - Method in class nom.tam.util.BufferedFile: Close the file
closeAllWindows() - Static method in class ij.WindowManager: Closes all windows.
closed - Variable in class ij.gui.ImageWindow
CLOSED - Static variable in class ij.ImagePlus
cm - Variable in class ij.process.ImageProcessor
cm2 - Variable in class ij.process.ImageProcessor
coefficients - Variable in class ij.io.FileInfo
COLOR8 - Static variable in class ij.io.FileInfo: 8-bit unsigned integer with color lookup table.
COLOR_256 - Static variable in class ij.ImagePlus: 8-bit indexed color
COLOR_MAP - Static variable in class ij.io.TiffDecoder
COLOR_RGB - Static variable in class ij.ImagePlus: 32-bit RGB color
ColorBlitter - Class in ij.process: This class does bit blitting of RGB images.
ColorBlitter(ColorProcessor) - Constructor for class ij.process.ColorBlitter: Constructs a ColorBlitter from a ColorProcessor.
ColorChooser - Class in ij.gui: Displays a dialog that allows the user to select a color using three sliders.
ColorChooser(String, Color, boolean) - Constructor for class ij.gui.ColorChooser: Constructs a ColorChooser using the specified title and initial color.
ColorPicker - Class in ij.plugin: Implements the Image/Color/Color Picker command.
ColorPicker() - Constructor for class ij.plugin.ColorPicker
ColorProcessor - Class in ij.process: This is an 32-bit RGB image and methods that operate on that image..
ColorProcessor(Image) - Constructor for class ij.process.ColorProcessor: Creates a ColorProcessor from an AWT Image.
ColorProcessor(int, int) - Constructor for class ij.process.ColorProcessor: Creates a blank ColorProcessor of the specified dimensions.
ColorProcessor(int, int, int[]) - Constructor for class ij.process.ColorProcessor: Creates a ColorProcessor from a pixel array.
Colors - Class in ij.plugin: This plugin implements most of the Edit/Options/Colors command.
Colors() - Constructor for class ij.plugin.Colors
ColorStatistics - Class in ij.process: RGB image statistics, including histogram.
ColorStatistics(ImageProcessor) - Constructor for class ij.process.ColorStatistics: Construct an ImageStatistics object from a ColorProcessor using the standard measurement options (area, mean, mode, min and max).
ColorStatistics(ImageProcessor, int, Calibration) - Constructor for class ij.process.ColorStatistics: Constructs a ColorStatistics object from a ColorProcessor using the specified measurement options.
COLUMN_IN_USE - Static variable in class ij.measure.ResultsTable
COLUMN_NOT_FOUND - Static variable in class ij.measure.ResultsTable
columnExists(int) - Method in class ij.measure.ResultsTable: Returns true if the specified column exists and is not empty.
columnKeyStems() - Method in class nom.tam.fits.AsciiTableHDU: Return the keyword column stems for an ASCII table.
columnKeyStems() - Method in class nom.tam.fits.BinaryTableHDU: What are the standard column stems for a binary table?
columnKeyStems() - Method in class nom.tam.fits.TableHDU: Get the stems of the keywords that are associated with table columns.
ColumnTable - Class in nom.tam.util: A data table is conventionally considered to consist of rows and columns, where the structure within each column is constant, but different columns may have different structures.
ColumnTable(Object[], int[]) - Constructor for class nom.tam.util.ColumnTable: Create the object after checking consistency.
combo - Variable in class skyview.geometry.sampler.ComboSampler
ComboSampler - Class in skyview.geometry.sampler: This class uses two samplers.
ComboSampler() - Constructor for class skyview.geometry.sampler.ComboSampler
COMMAND_IN_USE - Static variable in class ij.Menus
COMMAND_NOT_FOUND - Static variable in class ij.Menus
commandInUse(String) - Static method in class ij.Menus
CommandLister - Class in ij.plugin: Lists ImageJ commands or keyboard shortcuts in a text window.
CommandLister() - Constructor for class ij.plugin.CommandLister
commandPrefix - Static variable in class ij.plugin.MacroInstaller
Commands - Class in ij.plugin: Runs File and Window menu commands.
Commands() - Constructor for class ij.plugin.Commands
compare(Object, Object) - Method in class nom.tam.fits.HeaderOrder: Which order should the cards indexed by these keys be written out? This method assumes that the arguments are either the FITS Header keywords as strings, and some other type (or null) for comment style keywords.
Compiler - Class in ij.plugin: Compiles and runs plugins using the javac compiler.
Compiler() - Constructor for class ij.plugin.Compiler
Component - Interface in skyview
COMPOSITE - Static variable in class ij.gui.Roi
compositeImage - Variable in class ij.ImagePlus
COMPOUND_FILTER - Static variable in class ij.Undo
COMPOUND_FILTER_DONE - Static variable in class ij.Undo
compression - Variable in class ij.io.FileInfo
COMPRESSION - Static variable in class ij.io.TiffDecoder
COMPRESSION_NONE - Static variable in class ij.io.FileInfo
COMPRESSION_UNKNOWN - Static variable in class ij.io.FileInfo
computeSize(Object) - Static method in class nom.tam.util.ArrayFuncs: Compute the size of an object.
ConeQuerier - Class in skyview.vo: This class queries a cone search service and returns the positions and IDs.
ConeQuerier(String, String, double, double, double) - Constructor for class skyview.vo.ConeQuerier: Build a cone querier using the base URL and cone search parameters.
ConeQuerier(String, String) - Constructor for class skyview.vo.ConeQuerier: Build a cone querier using the full URL.
conjugateMultiply(FHT) - Method in class ij.process.FHT: Returns the image resulting from the point by point Hartley conjugate multiplication of this image and the specified image.
constrain - Variable in class ij.gui.Roi
CONSTRUCTING - Static variable in class ij.gui.Roi
CONSUMED - Static variable in class skyview.process.imagefinder.Border
CONSUMED - Static variable in class skyview.process.imagefinder.Checker
CONSUMED - Static variable in class skyview.sia.Checker
contains(int, int) - Method in class ij.gui.Line
contains(int, int) - Method in class ij.gui.OvalRoi
contains(int, int) - Method in class ij.gui.PolygonRoi
contains(int, int) - Method in class ij.gui.Roi
contains(int, int) - Method in class ij.gui.ShapeRoi: Checks whether the specified coordinates are inside a on this ROI's shape boundaries.
contains(Object) - Method in class nom.tam.util.HashedList: Does the HashedList contain this element?
containsAll(Collection) - Method in class nom.tam.util.HashedList: Does the HashedList contain all the elements of this other collection.
containsKey(String) - Method in class nom.tam.fits.Header: Tests if the specified keyword is present in this table.
containsKey(Object) - Method in class nom.tam.util.HashedList: Check if the key is included in the list
contour() - Method in class skyview.data.Contourer: Return a map of simple contours.
Contourer - Class in skyview.data: Find countours of an image.
Contourer() - Constructor for class skyview.data.Contourer
Contourer.CSqrt - Class in skyview.data
Contourer.CSqrt() - Constructor for class skyview.data.Contourer.CSqrt
ContrastAdjuster - Class in ij.plugin.frame: This plugin implements the Brightness/Contrast, Window/level and Color Balance commands, all in the Image/Adjust sub-menu.
ContrastAdjuster() - Constructor for class ij.plugin.frame.ContrastAdjuster
ContrastEnhancer - Class in ij.plugin: Implements ImageJ's Process/Enhance Contrast command.
ContrastEnhancer() - Constructor for class ij.plugin.ContrastEnhancer
ControlPanel - Class in ij.plugin: ControlPanel.
ControlPanel() - Constructor for class ij.plugin.ControlPanel
convert(String) - Method in class ij.plugin.Converter: Converts the ImagePlus to the specified image type.
convert(int) - Method in class ij.process.MedianCut: Uses Heckbert's median-cut algorithm to divide the color space defined by "hist" into "maxcubes" cubes.
convertArray(Object, Class, boolean) - Static method in class nom.tam.util.ArrayFuncs: Convert an array to a specified type.
convertArray(Object, Class) - Static method in class nom.tam.util.ArrayFuncs: Convert an array to a specified type.
convertBack(ImageProcessor, ImageProcessor, int) - Method in class ij.plugin.filter.RankFilters
Converter - Class in ij.plugin: Implements the conversion commands in the Image/Type submenu.
Converter() - Constructor for class ij.plugin.Converter
Converter - Class in skyview.geometry: A converter applies a succession of transformations on the data
Converter() - Constructor for class skyview.geometry.Converter
convertGrayJpegTo8Bits(ImagePlus) - Static method in class ij.io.Opener: If this image is grayscale, convert it to 8-bits.
convertHSBToRGB() - Method in class ij.process.ImageConverter: Converts a 3-slice (hue, saturation, brightness) 8-bit stack to RGB.
convertImagesToStack() - Method in class ij.plugin.StackEditor
convertNotation(String) - Static method in class skyview.util.Utilities: Handle exponential notation.
convertRGBStackToRGB() - Method in class ij.process.ImageConverter: Converts a 2 or 3 slice 8-bit stack to RGB.
convertRGBtoIndexedColor(int) - Method in class ij.process.ImageConverter: Converts an RGB image to 8-bits indexed color.
convertShortcutToCode(String) - Static method in class ij.Menus
convertStackToImages(ImagePlus) - Method in class ij.plugin.StackEditor
convertToByte(boolean) - Method in class ij.process.ImageProcessor: Returns an 8-bit version of this image as a ByteProcessor.
convertToByte(int) - Method in class ij.process.MedianCut: This is a version of convert that returns a ByteProcessor.
convertToByte() - Method in class ij.process.TypeConverter: Converts processor to a ByteProcessor.
convertToCoords() - Method in class skyview.request.SourceCoordinates: convert user input string to coords
convertToFloat() - Method in class ij.process.ImageProcessor: Returns a 32-bit float version of this image as a FloatProcessor.
convertToFloat(float[]) - Method in class ij.process.TypeConverter: Converts processor to a FloatProcessor.
convertToGray16() - Method in class ij.process.ImageConverter: Converts this ImagePlus to 16-bit grayscale.
convertToGray16() - Method in class ij.process.StackConverter: Converts this Stack to 16-bit grayscale.
convertToGray32() - Method in class ij.process.ImageConverter: Converts this ImagePlus to 32-bit grayscale.
convertToGray32() - Method in class ij.process.StackConverter: Converts this Stack to 32-bit (float) grayscale.
convertToGray8() - Method in class ij.process.ImageConverter: Converts this ImagePlus to 8-bit grayscale.
convertToGray8() - Method in class ij.process.StackConverter: Converts this Stack to 8-bit grayscale.
convertToHSB() - Method in class ij.process.ImageConverter: Converts an RGB image to a HSB (hue, saturation and brightness) stack.
convertToIndexedColor(int) - Method in class ij.process.StackConverter: Converts the stack to 8-bits indexed color.
convertToRGB() - Method in class ij.process.ImageConverter: Converts this ImagePlus to RGB.
convertToRGB() - Method in class ij.process.ImageProcessor: Returns an RGB version of this image as a ColorProcessor.
convertToRGB() - Method in class ij.process.StackConverter: Converts the Stack to RGB.
convertToRGB() - Method in class ij.process.TypeConverter: Converts processor to a ColorProcessor.
convertToRGBStack() - Method in class ij.process.ImageConverter: Converts an RGB image to an RGB (red, green and blue) stack.
convertToShort(boolean) - Method in class ij.process.ImageProcessor: Returns a 16-bit version of this image as a ShortProcessor.
convertToShort() - Method in class ij.process.TypeConverter: Converts processor to a ShortProcessor.
convolve(ImageProcessor, float[], int, int) - Method in class ij.plugin.filter.Convolver
convolve(float[], int, int) - Method in class ij.process.ByteProcessor: Performs a convolution operation using the specified kernel.
convolve(float[], int, int) - Method in class ij.process.ColorProcessor: Performs a convolution operation using the specified kernel.
convolve(float[], int, int) - Method in class ij.process.FloatProcessor: Performs a convolution operation using the specified kernel.
convolve(float[], int, int) - Method in class ij.process.ImageProcessor: Performs a convolution operation using the specified kernel.
convolve(float[], int, int) - Method in class ij.process.ShortProcessor: Performs a convolution operation using the specified kernel.
convolve3x3(int[]) - Method in class ij.process.ByteProcessor: 3x3 convolution contributed by Glynne Casteel.
convolve3x3(int[]) - Method in class ij.process.ColorProcessor: 3x3 convolution contributed by Glynne Casteel.
convolve3x3(int[]) - Method in class ij.process.FloatProcessor: 3x3 convolution contributed by Glynne Casteel.
convolve3x3(int[]) - Method in class ij.process.ImageProcessor: Convolves the image or ROI with the specified 3x3 integer convolution kernel.
convolve3x3(int[]) - Method in class ij.process.ShortProcessor: 3x3 convolution contributed by Glynne Casteel.
convolveFloat(ImageProcessor, float[], int, int) - Method in class ij.plugin.filter.Convolver: Convolves the image ip with a kernel of width kw and height kh.
Convolver - Class in ij.plugin.filter: This plugin does convolutions on real images using user user defined kernels.
Convolver() - Constructor for class ij.plugin.filter.Convolver
convolveRGB(ImageProcessor, float[], int, int) - Method in class ij.plugin.filter.Convolver
coord(double[]) - Static method in class skyview.geometry.Util: Convert a unit vector to the corresponding coordinates.
coord(double[], double[]) - Static method in class skyview.geometry.Util: Convert a unit vector to the corresponding coordinates.
CoordinateFormatter - Class in skyview.data
CoordinateFormatter() - Constructor for class skyview.data.CoordinateFormatter
CoordinateSystem - Class in skyview.geometry: The class defines coordinate systems in terms of the operations needed to transform the standard coordinate system (currently J2000) to the coordinate system associated with the object.
CoordinateSystem() - Constructor for class skyview.geometry.CoordinateSystem
CoordsPixel - Class in skyview.util: This class gives the coordinate values corresponding to a given pixel location in an image.
CoordsPixel() - Constructor for class skyview.util.CoordsPixel
copy - Variable in class ij.gui.HistogramWindow
copy(boolean) - Method in class ij.gui.ImageWindow: Copies the current ROI to the clipboard.
copy(boolean) - Method in class ij.ImagePlus: Copies the contents of the current selection to the internal clipboard.
copy() - Method in class ij.measure.Calibration: Returns a clone of this object.
COPY - Static variable in interface ij.process.Blitter: dst=src
COPY_INVERTED - Static variable in interface ij.process.Blitter: dst=255-src (8-bits and RGB)
COPY_TRANSPARENT - Static variable in interface ij.process.Blitter: Copies with white pixels transparent.
copyArray(Object, Object) - Static method in class nom.tam.util.ArrayFuncs: Copy one array into another.
copyBits(ImageProcessor, int, int, int) - Method in interface ij.process.Blitter: Copies the image in 'src' to (x,y) using the specified mode.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ByteBlitter: Copies the byte image in 'ip' to (x,y) using the specified mode.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ByteProcessor: Copies the image contained in 'ip' to (xloc, yloc) using one of the transfer modes defined in the Blitter interface.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ColorBlitter: Copies the RGB image in 'ip' to (x,y) using the specified mode.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ColorProcessor: Copies the image contained in 'ip' to (xloc, yloc) using one of the transfer modes defined in the Blitter interface.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.FloatBlitter: Copies the float image in 'ip' to (x,y) using the specified mode.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.FloatProcessor: Copies the image contained in 'ip' to (xloc, yloc) using one of the transfer modes defined in the Blitter interface.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ImageProcessor: Copies the image contained in 'ip' to (xloc, yloc) using one of the transfer modes defined in the Blitter interface.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ShortBlitter: Copies the 16-bit image in 'ip' to (x,y) using the specified mode.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ShortProcessor: Copies the image contained in 'ip' to (xloc, yloc) using one of the transfer modes defined in the Blitter interface.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.StackProcessor
copyBits(ImageStack, int, int, int) - Method in class ij.process.StackProcessor
copyInto(Object, Object) - Static method in class nom.tam.util.ArrayFuncs: Copy an array into an array of a different type.
copyScale(ImagePlus) - Method in class ij.ImagePlus: Copies the calibration of the specified image to this image.
copySelection() - Method in class ij.text.TextPanel: Copies the current selection to the system clipboard.
copyToClipboard() - Method in class ij.gui.HistogramWindow
copyToHeader(Header) - Method in class skyview.geometry.WCS
cornerMatch(int[], boolean[], boolean[]) - Method in class skyview.process.imagefinder.Border: Check the corners of a rectangle.
cornerMatch(int[], boolean[], boolean[]) - Method in class skyview.process.imagefinder.Checker: Check the corners of a rectangle.
cornerMatch(int[], boolean[], boolean[]) - Method in class skyview.sia.Checker: Check the corners of a rectangle.
cornersOnly - Variable in class skyview.process.imagefinder.Border: Do we want to only check on the corners of the rectangles and not the edges.
cornersOnly - Variable in class skyview.process.imagefinder.Checker: Do we want to only check on the corners of the rectangles and not the edges.
cornersOnly - Variable in class skyview.sia.Checker: Do we want to only check on the corners of the rectangles and not the edges.
COS - Static variable in interface ij.macro.MacroConstants
count - Variable in class ij.gui.HistogramWindow
COUNT - Static variable in class ij.plugin.filter.MaximumFinder: Output type no image, only count maxima
create(String, String) - Method in class ij.plugin.frame.Editor
createBlankImage(int, int) - Static method in class ij.gui.GUI: Creates a white AWT Image image of the specified size.
createByColumn() - Method in class nom.tam.fits.test.AsciiTableTester
createByRow() - Method in class nom.tam.fits.test.AsciiTableTester
createByteImage(String, int, int, int, int) - Static method in class ij.gui.NewImage
createColorModel(FileInfo) - Method in class ij.io.FileOpener: Returns an IndexColorModel for the image specified by this FileInfo.
createEmptyStack() - Method in class ij.ImagePlus: Returns an empty image stack that has the same width, height and color table as this image.
createFitsFile() - Method in class skyview.executive.Imager: Create the FITS file
createFloatImage(String, int, int, int, int) - Static method in class ij.gui.NewImage
createGrayscaleColorModel(boolean) - Static method in class ij.LookUpTable
createImage(String, int, int, int, int, int) - Static method in class ij.gui.NewImage
createImage(String, String, int, int, int) - Static method in class ij.IJ: Creates a new imagePlus.
createImage() - Method in class ij.process.ByteProcessor
createImage() - Method in class ij.process.ColorProcessor
createImage() - Method in class ij.process.FloatProcessor
createImage() - Method in class ij.process.ImageProcessor: Returns a copy of this image is the form of an AWT Image.
createImage() - Method in class ij.process.ShortProcessor: Create an 8-bit AWT image by scaling pixels in the range min-max to 0-255.
createImagePlus() - Method in class ij.ImagePlus: Returns a new ImagePlus with this ImagePlus' attributes (e.g.
createInputStream(FileInfo) - Method in class ij.io.FileOpener: Returns an InputStream for the image described by this FileInfo.
createLut() - Method in class ij.ImagePlus: Creates a LookUpTable object corresponding to this image.
createLUT() - Method in class ij.plugin.filter.AVIWriter
createMacro(String, String) - Method in class ij.plugin.frame.Editor
createMacro(String) - Method in class ij.plugin.NewPlugin
createNewRoi(int, int) - Method in class ij.ImagePlus: Starts the process of creating a new selection, where sx and sy are the starting screen coordinates.
createPlugin(String, int, String) - Method in class ij.plugin.NewPlugin
createProcessor(int, int) - Method in class ij.process.ByteProcessor: Returns a new, blank ByteProcessor with the specified width and height.
createProcessor(int, int) - Method in class ij.process.ColorProcessor: Returns a new, blank ShortProcessor with the specified width and height.
createProcessor(int, int) - Method in class ij.process.FloatProcessor: Returns a new, blank FloatProcessor with the specified width and height.
createProcessor(int, int) - Method in class ij.process.ImageProcessor: Returns a new, blank processor with the specified width and height.
createProcessor(int, int) - Method in class ij.process.ShortProcessor: Returns a new, blank ShortProcessor with the specified width and height.
createRGBImage(String, int, int, int, int) - Static method in class ij.gui.NewImage
createShortImage(String, int, int, int, int) - Static method in class ij.gui.NewImage: Creates an unsigned short image.
createUnsignedShortImage(String, int, int, int, int) - Static method in class ij.gui.NewImage: Obsolete.
createWindow() - Method in class ij.gui.ProfilePlot: Displays this profile plot in a window.
criterion(double, int) - Method in class skyview.process.imagefinder.Border
criterion(double, int) - Method in class skyview.process.imagefinder.Checker
criterion(double, int) - Method in class skyview.process.imagefinder.MaxExposure: The criterion for the best image
criterion(double, int) - Method in class skyview.sia.Checker
crop() - Method in class ij.process.ByteProcessor
crop() - Method in class ij.process.ColorProcessor
crop() - Method in class ij.process.FloatProcessor
crop() - Method in class ij.process.ImageProcessor: Creates a new processor containing an image that corresponds to the current ROI.
crop() - Method in class ij.process.ShortProcessor
crop(int, int, int, int) - Method in class ij.process.StackProcessor: Crops the stack to the specified rectangle.
CROSS - Static variable in class ij.gui.Plot: Display points using an cross-shaped mark.
CROSS - Static variable in class ij.gui.PlotWindow: Display points using an cross-shaped mark.
CROSSHAIR - Static variable in class ij.gui.Toolbar
crosshairCursor - Static variable in class ij.gui.ImageCanvas
CscProjecter - Class in skyview.geometry.projecter
CscProjecter() - Constructor for class skyview.geometry.projecter.CscProjecter
CscProjecter.CscDeprojecter - Class in skyview.geometry.projecter
CscProjecter.CscDeprojecter() - Constructor for class skyview.geometry.projecter.CscProjecter.CscDeprojecter
cTable - Variable in class ij.process.ImageProcessor
curl(Object, int[]) - Static method in class nom.tam.util.ArrayFuncs: Curl an input array up into a multi-dimensional array.
currentMemory() - Static method in class ij.IJ: Returns the amount of memory currently being used by ImageJ.
currentSize() - Method in class nom.tam.fits.Fits: Deprecated. See getNumberOfHDUs()
currentSlice - Variable in class ij.ImagePlus
Cursor - Interface in nom.tam.util: This interface extends the Iterator interface to allow insertion of data and move to previous entries in a collection.
cursorTest() - Method in class nom.tam.fits.test.HeaderTester
CurveFitter - Class in ij.measure: Curve fitting class based on the Simplex method described in the article "Fitting Curves to Data" in the May 1984 issue of Byte magazine, pages 340-362.
CurveFitter(double[], double[]) - Constructor for class ij.measure.CurveFitter: Construct a new CurveFitter.
CUSTOM - Static variable in class ij.io.Opener
CUSTOM - Static variable in class ij.measure.Calibration
cx - Variable in class ij.process.ImageProcessor
cy - Variable in class ij.process.ImageProcessor

D

d2s(double) - Static method in class ij.IJ: Converts a number to a formatted string using 2 digits to the right of the decimal point.
d2s(double, int) - Static method in class ij.IJ: Converts a number to a rounded formatted string.
D2S - Static variable in interface ij.macro.MacroConstants
darkBlue - Static variable in class ij.plugin.filter.Analyzer
Data - Class in nom.tam.fits: This class provides methods to access the data segment of an HDU.
Data() - Constructor for class nom.tam.fits.Data
data - Variable in class skyview.survey.Image: The data in the image.
dataFactory(Header) - Static method in class nom.tam.fits.FitsFactory: Given a Header return an appropriate datum.
DataIO - Interface in nom.tam.util: This interface combines the DataInput, DataOutput and RandomAccess interfaces to provide a reference type which can be used to build BufferedFile in a fashion that accommodates both the RandomAccessFile and ByteBuffers
dataSize - Variable in class nom.tam.fits.Data: The size of the data when last read
DataTable - Interface in nom.tam.util: This interface defines the properties that a generic table should have.
DATE_TIME - Static variable in class ij.io.TiffDecoder
DateTester - Class in nom.tam.fits.test: Test the FITS date class.
DateTester() - Constructor for class nom.tam.fits.test.DateTester
dBin - Variable in class skyview.executive.Imager: The width of pixels in energy space
debug(boolean) - Method in class skyview.geometry.Converter
debugInfo - Variable in class ij.io.FileInfo
debugMode - Static variable in class ij.IJ
debugMode - Variable in class ij.io.TiffDecoder
decimal(double, int) - Method in class skyview.data.CoordinateFormatter
decimalPlaces - Variable in class ij.gui.HistogramWindow
decodeToken(int) - Method in class ij.macro.Program
decompress(InputStream) - Static method in class skyview.survey.HDecompressor: Hdecompress static method.
decompress() - Method in class skyview.survey.HDecompressor: Decompress the input stream.
Deedger - Class in skyview.process: Invoke the standard deedger.
Deedger() - Constructor for class skyview.process.Deedger
deepClone(Object) - Static method in class nom.tam.util.ArrayFuncs: Try to create a deep clone of an Array or a standard clone of a scalar.
DEFAULT_FLAGS - Static variable in class ij.gui.Plot: the default flags
DEFAULT_PORT - Static variable in class ij.ImageJ: Address of socket where Image accepts commands
DEFAULT_QUALITY - Static variable in class ij.plugin.JpegWriter
defaultColorModel - Static variable in class ij.process.ImageProcessor
defaultCursor - Static variable in class ij.gui.ImageCanvas
defaultDirectory - Static variable in class ij.gui.HistogramWindow
defaultText - Variable in class ij.gui.GenericDialog
defaultValues - Variable in class ij.gui.GenericDialog
degreeSymbol - Static variable in class ij.IJ
delete() - Method in class nom.tam.fits.test.AsciiTableTester
deleteColumns(int, int) - Method in class nom.tam.fits.AsciiTable: Delete columns from the table.
deleteColumns(int, int) - Method in class nom.tam.fits.BinaryTable: Delete a set of columns.
deleteColumns(int, int) - Method in interface nom.tam.fits.TableData
deleteColumns(int, int) - Method in class nom.tam.util.ColumnTable: Delete a contiguous set of columns from the table.
deleteColumnsIndexOne(int, int) - Method in class nom.tam.fits.TableHDU: Delete a set of columns from a table.
deleteColumnsIndexOne(int, int, String[]) - Method in class nom.tam.fits.TableHDU: Delete a set of columns from a table.
deleteColumnsIndexZero(int, int) - Method in class nom.tam.fits.TableHDU: Delete a set of columns from a table.
deleteColumnsIndexZero(int, int, String[]) - Method in class nom.tam.fits.TableHDU: Delete a set of columns from a table.
deleteHDU(int) - Method in class nom.tam.fits.Fits: Delete an HDU from the HDU list.
deleteKey(String) - Method in class nom.tam.fits.Header: Delete the card associated with the given key.
deleteLastSlice() - Method in class ij.ImageStack: Deletes the last slice in the stack.
deleteRow(int) - Method in class ij.measure.ResultsTable: Deletes the specified row.
deleteRow(int) - Method in class nom.tam.util.ColumnTable: Delete a row from the table.
deleteRows(int, int) - Method in class nom.tam.fits.AsciiTable: Delete rows from a FITS table
deleteRows(int, int) - Method in class nom.tam.fits.BinaryTable: Delete rows from a table.
deleteRows(int, int) - Method in interface nom.tam.fits.TableData
deleteRows(int) - Method in class nom.tam.fits.TableHDU: Remove all rows from the table starting at some specific index from the table.
deleteRows(int, int) - Method in class nom.tam.fits.TableHDU: Remove a number of adjacent rows from the table.
deleteRows(int, int) - Method in class nom.tam.util.ColumnTable: Delete a contiguous set of rows from the table.
deleteSlice(int) - Method in class ij.ImageStack: Deletes the specified slice, were 1<=n<=nslices.
deproject(double, double) - Method in class skyview.geometry.projecter.ToaProjecter.ToaDeprojecter: Deproject from the plane to the sky.
Deprojecter - Class in skyview.geometry: This class deprojects a point from a projection plane onto thecelestial sphere.
Deprojecter() - Constructor for class skyview.geometry.Deprojecter
DepthSampler - Class in skyview.geometry: This class handles sampling in the depth dimension
DepthSampler(double, double, int) - Constructor for class skyview.geometry.DepthSampler: Generate an output image with the appropriate pixelization
description - Variable in class ij.io.FileInfo
DESPECKLE - Static variable in class ij.plugin.filter.RankFilters
dfht3(float[], int, boolean, int) - Method in class ij.process.FHT: Performs an optimized 1D FHT.
DFT_CACHE - Static variable in class skyview.survey.CachingImageFactory
DIALOG - Static variable in interface ij.macro.MacroConstants
DICOM - Static variable in class ij.io.FileInfo
DICOM - Static variable in class ij.io.Opener
DICOM - Class in ij.plugin: This plugin decodes DICOM files.
DICOM() - Constructor for class ij.plugin.DICOM
DICOM_Sorter - Class in ij.plugin
DICOM_Sorter() - Constructor for class ij.plugin.DICOM_Sorter
DIFFERENCE - Static variable in interface ij.process.Blitter: dst=abs(dst-src)
digits - Variable in class ij.gui.HistogramWindow
dilate() - Method in class ij.process.ByteProcessor
dilate(int, int) - Method in class ij.process.ByteProcessor
dilate() - Method in class ij.process.ColorProcessor
dilate() - Method in class ij.process.FloatProcessor: Not implemented.
dilate() - Method in class ij.process.ImageProcessor: Dilates the image or ROI using a 3x3 minimum filter.
dilate() - Method in class ij.process.ShortProcessor: Not implemented.
DIR_IMAGE - Static variable in class ij.Prefs
directory - Variable in class ij.io.FileInfo
DirectoryChooser - Class in ij.io: This class displays a dialog box that allows the user can select a directory.
DirectoryChooser(String) - Constructor for class ij.io.DirectoryChooser: Display a dialog using the specified title.
disableDensityCalibration() - Method in class ij.measure.Calibration
disablePathRecording() - Static method in class ij.plugin.frame.Recorder: Temporarily disables path recording.
disablePopupMenu(boolean) - Method in class ij.gui.ImageCanvas: Disable/enable popup menu.
disableRowLabels() - Method in class ij.measure.ResultsTable: Set the row label column to null.
disableUndo - Static variable in class ij.Prefs: Disable Edit/Undo command.
display(String, String) - Method in class ij.plugin.frame.Editor
DISPLAY_SUMMARY - Static variable in class ij.plugin.filter.ParticleAnalyzer: Display a summary.
displayComplex - Static variable in class ij.plugin.FFT
displayFHT - Static variable in class ij.plugin.FFT
displayRawPS - Static variable in class ij.plugin.FFT
displayResults() - Method in class ij.plugin.filter.Analyzer: Writes the last row in the results table to the ImageJ window.
displaySummary - Variable in class ij.plugin.filter.ParticleAnalyzer
Distorter - Class in skyview.geometry: This class defines a non-linear distortion in the image plane.
Distorter() - Constructor for class skyview.geometry.Distorter
Distribution - Class in ij.plugin: This plugin implements the Analyze/Distribution command.
Distribution() - Constructor for class ij.plugin.Distribution
DIV_BY_ZERO_VALUE - Static variable in class ij.Prefs
DIV_EQUAL - Static variable in interface ij.macro.MacroConstants
DIVIDE - Static variable in interface ij.process.Blitter: dst=dst/src
divide(FHT) - Method in class ij.process.FHT: Returns the image resulting from the point by point Hartley division of this image by the specified image.
divideByZeroValue - Static variable in class ij.process.FloatBlitter
dmode - Variable in class ij.process.ImageStatistics
DO - Static variable in interface ij.macro.MacroConstants
DO_COMMAND - Static variable in interface ij.macro.MacroConstants
DO_WAND - Static variable in interface ij.macro.MacroConstants
doCommand(String) - Static method in class ij.IJ: Starts executing a menu command in a separete thread and returns immediately.
doCurl(Object, Object, int[], int) - Static method in class nom.tam.util.ArrayFuncs: Do the curling of the 1-d to multi-d array.
DOES_16 - Static variable in interface ij.plugin.filter.PlugInFilter: Set this flag if the filter handles 16-bit images.
DOES_32 - Static variable in interface ij.plugin.filter.PlugInFilter: Set this flag if the filter handles float images.
DOES_8C - Static variable in interface ij.plugin.filter.PlugInFilter: Set this flag if the filter handles 8-bit indexed color images.
DOES_8G - Static variable in interface ij.plugin.filter.PlugInFilter: Set this flag if the filter handles 8-bit grayscale images.
DOES_ALL - Static variable in interface ij.plugin.filter.PlugInFilter: Set this flag if the filter handles all types of images.
DOES_RGB - Static variable in interface ij.plugin.filter.PlugInFilter: Set this flag if the filter handles RGB images.
DOES_STACKS - Static variable in interface ij.plugin.filter.PlugInFilter: Set this flag if the filter wants its run() method to be called for all the slices in a stack.
doFit(int) - Method in class ij.measure.CurveFitter: Perform curve fitting with the simplex method doFit(fitType) just does the fit doFit(fitType, true) pops up a dialog allowing control over simplex parameters alpha is reflection coefficient (-1) beta is contraction coefficient (0.5) gamma is expansion coefficient (2)
doFit(int, boolean) - Method in class ij.measure.CurveFitter
doFit(int) - Method in class ij.plugin.frame.Fitter
doFlatten(Object, Object, int) - Static method in class nom.tam.util.ArrayFuncs: This routine does the actually flattening of multi-dimensional arrays.
doMath(ImagePlus, ImagePlus) - Method in class ij.plugin.FFTMath
doMetadata() - Method in class skyview.sia.SIA
done - Variable in class ij.gui.StackWindow
DONE - Static variable in interface ij.plugin.filter.PlugInFilter: Set this flag if the filter does not want its run method called.
doOptions() - Method in class ij.plugin.filter.Profiler
doParse(SAXParser, DefaultHandler) - Method in class skyview.survey.XMLSurvey: Run a parser
doProcess(String) - Method in class skyview.executive.Imager
doProjection() - Method in class ij.plugin.ZProjector: Performs actual projection using specified method.
doProjections(ImagePlus) - Method in class ij.plugin.filter.Projector
doRGBProjection() - Method in class ij.plugin.ZProjector
doRGBProjections(ImagePlus) - Method in class ij.plugin.filter.Projector
DOT - Static variable in class ij.gui.Plot: Display points using a single pixel.
DOUBLE_CLICK_THRESHOLD - Static variable in class ij.gui.Toolbar
DOUBLE_INDEX - Static variable in interface nom.tam.util.PrimitiveInfo
doubleArrayEquals(double[], double[], double) - Static method in class nom.tam.util.ArrayFuncs: Compare two double arrays using a given tolerance
doubleBuffer - Static variable in class ij.Prefs: Double buffer display of selections.
doWand(int, int) - Static method in class ij.IJ: Equivalent to clicking on the current image at (x,y) with the wand tool.
DragAndDrop - Class in ij.plugin: This class opens images, roi's, luts and text files dragged and dropped on the "ImageJ" window.
DragAndDrop() - Constructor for class ij.plugin.DragAndDrop
dragEnter(DropTargetDragEvent) - Method in class ij.plugin.DragAndDrop
dragExit(DropTargetEvent) - Method in class ij.plugin.DragAndDrop
dragOver(DropTargetDragEvent) - Method in class ij.plugin.DragAndDrop
draw(Graphics) - Method in class ij.gui.Line: Draws this line in the image.
draw(Graphics) - Method in class ij.gui.OvalRoi
draw() - Method in class ij.gui.Plot: Draws the plot specified in the constructor.
draw() - Method in class ij.gui.PlotWindow: Displays the plot.
draw(Graphics) - Method in class ij.gui.PointRoi: Draws the points on the image.
draw(Graphics) - Method in class ij.gui.PolygonRoi
draw(Graphics) - Method in class ij.gui.Roi
draw(Graphics) - Method in class ij.gui.ShapeRoi: Non-destructively draws the shape of this object on the associated ImagePlus.
draw(Graphics) - Method in class ij.gui.TextRoi: Draws the text on the screen, clipped to the ROI.
draw() - Method in class ij.ImagePlus: Draws the image.
draw(int, int, int, int) - Method in class ij.ImagePlus: Draws image and roi outline using a clip rect.
draw(ImageProcessor) - Method in class ij.plugin.filter.Filler
DRAW_LINE - Static variable in interface ij.macro.MacroConstants
DRAW_OVAL - Static variable in interface ij.macro.MacroConstants
DRAW_RECT - Static variable in interface ij.macro.MacroConstants
DRAW_STRING - Static variable in interface ij.macro.MacroConstants
drawColorBar(Graphics, int, int, int, int) - Method in class ij.LookUpTable
drawColorBar(ImageProcessor, int, int) - Method in class ij.plugin.filter.CalibrationBar
drawColorBar(ImagePlus, int, int) - Method in class ij.plugin.filter.CalibrationBar
drawDot(int, int) - Method in class ij.process.ImageProcessor: Draws a dot using the current line width and fill/draw value.
drawDot2(int, int) - Method in class ij.process.ImageProcessor: Obsolete
drawEllipse(ImageProcessor) - Method in class ij.process.EllipseFitter: Draws the ellipse on the specified image.
drawEllipse(ImageProcessor) - Method in class ij.process.ImageStatistics
drawHistogram(ImageProcessor, boolean) - Method in class ij.gui.HistogramWindow
drawInfo(Graphics) - Method in class ij.gui.ImageWindow
drawingColor - Variable in class ij.process.ImageProcessor
drawLabel(ImagePlus, ImageProcessor, int, Rectangle) - Method in class ij.plugin.filter.Filler
drawLine(int, int, int, int) - Method in class ij.process.ImageProcessor: Draws a line from (x1,y1) to (x2,y2).
drawOval(int, int, int, int) - Method in class ij.process.ImageProcessor: Draws an elliptical shape.
drawParticle(ImageProcessor, Roi, ImageStatistics, ImageProcessor) - Method in class ij.plugin.filter.ParticleAnalyzer: Draws a selected particle in a separate image.
drawPixel(int, int) - Method in class ij.process.ByteProcessor: Draws a pixel in the current foreground color.
drawPixel(int, int) - Method in class ij.process.ColorProcessor: Draws a pixel in the current foreground color.
drawPixel(int, int) - Method in class ij.process.FloatProcessor: Draws a pixel in the current foreground color.
drawPixel(int, int) - Method in class ij.process.ImageProcessor: Sets the pixel at (x,y) to the current fill/draw value.
drawPixel(int, int) - Method in class ij.process.ShortProcessor: Draws a pixel in the current foreground color.
drawPixels(ImageProcessor) - Method in class ij.gui.Line
drawPixels(ImageProcessor) - Method in class ij.gui.OvalRoi: Draws an outline of this OvalRoi on the image.
drawPixels(ImageProcessor) - Method in class ij.gui.PointRoi
drawPixels(ImageProcessor) - Method in class ij.gui.PolygonRoi
drawPixels() - Method in class ij.gui.Roi: Obsolete, use drawPixels(ImageProcessor)
drawPixels(ImageProcessor) - Method in class ij.gui.Roi: Draws the selection outline on the specified ImageProcessor.
drawPixels(ImageProcessor) - Method in class ij.gui.ShapeRoi: Draws the shape of this object onto the specified ImageProcessor.
drawPixels(ImageProcessor) - Method in class ij.gui.TextRoi: Renders the text on the image.
drawPlot(Plot) - Method in class ij.gui.PlotWindow: Draws a new plot in this window.
drawPolygon(Polygon) - Method in class ij.process.ImageProcessor: Draws a polygon.
drawRect(int, int, int, int) - Method in class ij.process.ImageProcessor: Draws a rectangle.
drawString(String) - Method in class ij.process.ImageProcessor: Draws a string at the current location using the current fill/draw value.
drawString(String, int, int) - Method in class ij.process.ImageProcessor: Draws a string at the specified location using the current fill/draw value.
drawUnscaledColorBar(ImageProcessor, int, int, int, int) - Method in class ij.LookUpTable
drizzArea - Variable in class skyview.geometry.sampler.ClipSampler: Drizzle Area
drizzOffset - Variable in class skyview.geometry.sampler.ClipSampler: Drizzle offset
drop(DropTargetDropEvent) - Method in class ij.plugin.DragAndDrop
dropActionChanged(DropTargetDragEvent) - Method in class ij.plugin.DragAndDrop
DROPPER - Static variable in class ij.gui.Toolbar
dsamp - Variable in class skyview.executive.Imager: The energy sampler object used when creaing the output image.
DSS2ImageGenerator - Class in skyview.survey: This class generates DSS2 image spells.
DSS2ImageGenerator() - Constructor for class skyview.survey.DSS2ImageGenerator
DSSDistorter - Class in skyview.geometry.distorter: The distortion object for a given DSS structure.
DSSDistorter(double, double, double, double, double, double[], double[], double[]) - Constructor for class skyview.geometry.distorter.DSSDistorter
DSSDistorter.DSSInvDistorter - Class in skyview.geometry.distorter: This inner class is the inverse of the DSS Distorter and corrects the distortion generated there.
DSSDistorter.DSSInvDistorter() - Constructor for class skyview.geometry.distorter.DSSDistorter.DSSInvDistorter
DSSImage - Class in skyview.survey: This class defines an image as the combination of a set of pixel values and a WCS describing the pixel coordinates.
DSSImage(String) - Constructor for class skyview.survey.DSSImage: Construct a DSS image
DSSImageFactory - Class in skyview.survey: A little class that creates FITS images using a factory method.
DSSImageFactory() - Constructor for class skyview.survey.DSSImageFactory
dstHeight - Variable in class ij.gui.ImageCanvas
dstWidth - Variable in class ij.gui.ImageCanvas
DUMP - Static variable in interface ij.macro.MacroConstants
dump(PrintStream) - Method in class skyview.geometry.Scaler: Show the scaler.
dumpHeader(PrintStream) - Method in class nom.tam.fits.Header: Print the header to a given stream.
dumpLines() - Method in class skyview.data.Gridder: Display the lines
dumpProgram() - Method in class ij.macro.Program
dumpSymbolTable() - Method in class ij.macro.Program
duplicate(ImagePlus) - Method in class ij.plugin.filter.Duplicater
duplicate() - Method in class ij.process.ByteProcessor: Returns a duplicate of this image.
duplicate() - Method in class ij.process.ColorProcessor: Returns a duplicate of this image.
duplicate() - Method in class ij.process.FloatProcessor: Returns a duplicate of this image.
duplicate() - Method in class ij.process.ImageProcessor: Returns a duplicate of this image.
duplicate() - Method in class ij.process.ShortProcessor: Returns a duplicate of this image.
Duplicater - Class in ij.plugin.filter: This plugin implements ImageJ's Image/Duplicate command.
Duplicater() - Constructor for class ij.plugin.filter.Duplicater
duplicateStack(ImagePlus, String) - Method in class ij.plugin.filter.Duplicater
dynoProcess(String) - Method in class skyview.executive.Imager

E

east(ImageProcessor) - Method in class ij.plugin.filter.Shadows
EclipticCoordinateSystem - Class in skyview.geometry.csys: An ecliptic coordinate system in a Julian frame.
EclipticCoordinateSystem(double) - Constructor for class skyview.geometry.csys.EclipticCoordinateSystem: Get an Ecliptic Coordinate system at a given epoch.
EclipticCoordinateSystem(double, double) - Constructor for class skyview.geometry.csys.EclipticCoordinateSystem: Get an Ecliptic coordinate system where the 0 of longitude can be reset.
edgeOff(int, int, int, int, boolean[]) - Method in class skyview.process.imagefinder.Border: Check whether all pixels on an edge of a rectangle all have the same best fit image.
edgeOff(int, int, int, int, boolean[]) - Method in class skyview.process.imagefinder.Checker: Check whether all pixels on an edge of a rectangle all have the same best fit image.
edgeOff(int, int, int, int, boolean[]) - Method in class skyview.sia.Checker: Check whether all pixels on an edge of a rectangle all have the same best fit image.
Editor - Class in ij.plugin.frame: This is a simple TextArea based editor for editing and compiling plugins.
Editor() - Constructor for class ij.plugin.frame.Editor
EDM - Class in ij.plugin.filter: This plugin implements the Euclidean Distance Map (EDM), Ultimate Eroded Points and Watershed commands in the Process/Binary submenu.
EDM() - Constructor for class ij.plugin.filter.EDM
ELLIPSE - Static variable in interface ij.measure.Measurements
EllipseFitter - Class in ij.process: This class fits an ellipse to an ROI.
EllipseFitter() - Constructor for class ij.process.EllipseFitter
ELLIPSES - Static variable in class ij.plugin.filter.ParticleAnalyzer
ELSE - Static variable in interface ij.macro.MacroConstants
enableDebugging() - Method in class ij.io.TiffDecoder
encapsulate(Object) - Static method in class nom.tam.fits.AsciiTableHDU: Create a ASCII table data structure from an array of objects representing the columns.
encapsulate(Object) - Static method in class nom.tam.fits.BinaryTableHDU: Encapsulate data in a BinaryTable data type
encapsulate(Object) - Static method in class nom.tam.fits.ImageHDU: Encapsulate an object as an ImageHDU.
encapsulate(Object) - Static method in class nom.tam.fits.RandomGroupsHDU
encapsulate(Object) - Static method in class nom.tam.fits.UndefinedHDU: Encapsulate an object as an ImageHDU.
endPaste() - Method in class ij.gui.Roi
ENDS_WITH - Static variable in interface ij.macro.MacroConstants
EOF - Static variable in interface ij.macro.MacroConstants
EOL - Static variable in interface ij.macro.MacroConstants
EQ - Static variable in interface ij.macro.MacroConstants
equalize(ImagePlus) - Method in class ij.plugin.ContrastEnhancer
equalize(ImageProcessor) - Method in class ij.plugin.ContrastEnhancer: Changes the tone curves of images.
equals(Calibration) - Method in class ij.measure.Calibration: Compares two Calibration objects for equality.
equals(Object, Object) - Method in class nom.tam.fits.HeaderOrder: Can two cards be exchanged when being written out?
equals(Object) - Method in class nom.tam.util.test.ArrayFuncsTest.CloneTest
erode() - Method in class ij.process.ByteProcessor
erode(int, int) - Method in class ij.process.ByteProcessor
erode() - Method in class ij.process.ColorProcessor
erode() - Method in class ij.process.FloatProcessor: Not implemented.
erode() - Method in class ij.process.ImageProcessor: Erodes the image or ROI using a 3x3 maximum filter.
erode() - Method in class ij.process.ShortProcessor: Not implemented.
error(String) - Static method in class ij.IJ: Displays a message in a dialog box titled "ImageJ".
error(String, String) - Static method in class ij.IJ: Displays a message in a dialog box with the specified title.
error(String) - Static method in class skyview.survey.XMLSurveyDescription
escapePressed() - Static method in class ij.IJ: Returns true if the Esc key was pressed since the last ImageJ command started to execute or since resetEscape() was called.
EVAL - Static variable in interface ij.macro.MacroConstants
evalSpline(int[], int[], int, double) - Method in class ij.measure.SplineFitter: Evalutes spline function at given point
examinePrimitiveArray(Object) - Static method in class nom.tam.util.ArrayFuncs: Examine the structure of an array in detail.
EXCLUDE_EDGE_PARTICLES - Static variable in class ij.plugin.filter.ParticleAnalyzer: Do not measure particles touching edge of image.
excludeEdgeParticles - Variable in class ij.plugin.filter.ParticleAnalyzer
Executer - Class in ij: Runs ImageJ menu commands in a separate thread.
Executer(String) - Constructor for class ij.Executer: Create an Executer to run the specified menu command in this thread using the active image.
Executer(String, ImagePlus) - Constructor for class ij.Executer: Create an Executer that runs the specified menu command in a separate thread using the active image image.
EXIT - Static variable in interface ij.macro.MacroConstants
EXP - Static variable in interface ij.macro.MacroConstants
exp() - Method in class ij.process.FloatProcessor
exp() - Method in class ij.process.ImageProcessor: Performs a exponential transform on the image or ROI.
exp() - Method in class ij.process.ShortProcessor
expandImage(ImageProcessor, int, int, int, int) - Method in class ij.plugin.CanvasResizer
expandStack(ImageStack, int, int, int, int) - Method in class ij.plugin.CanvasResizer
EXPONENTIAL - Static variable in class ij.measure.Calibration
EXPONENTIAL - Static variable in class ij.measure.CurveFitter

F

f(int, double[], double) - Static method in class ij.measure.CurveFitter: Returns "fit" function value for parameters "p" at "x"
f2hex(float) - Static method in class ij.util.Tools: Converts a float to an 9 byte hex string starting with '#'.
factory(String) - Static method in class skyview.geometry.CoordinateSystem: Get a coordinate system by name.
factory(String, String) - Static method in class skyview.geometry.CoordinateSystem
factory(String) - Static method in class skyview.geometry.Sampler: Factory for creating samplers
factory(String) - Static method in class skyview.process.ImageFinder: Create an ImageFinder given a class name or return an instance of the default class if no name is given.
factory(String, String, double, String) - Static method in class skyview.request.SourceCoordinates
factory(String, String, String) - Static method in class skyview.request.SourceCoordinates
factory(String) - Method in class skyview.survey.CachingImageFactory
factory(String) - Method in class skyview.survey.DSSImageFactory
factory(String) - Method in class skyview.survey.FitsImageFactory
factory(String) - Method in interface skyview.survey.ImageFactory: Create an image given the appropriate spell
factory(String, double, double, double) - Static method in class skyview.vo.ConeQuerier: Create a ConeQuerier Object.
FALSE - Static variable in interface ij.macro.MacroConstants
FCOLOR - Static variable in class ij.Prefs
FERET - Static variable in interface ij.measure.Measurements
FERET - Static variable in class ij.measure.ResultsTable
FFT - Class in ij.plugin: This class implements the FFT, Inverse FFT and Redisplay Power Spectrum commands in the Process/FFT submenu.
FFT() - Constructor for class ij.plugin.FFT
FFTCustomFilter - Class in ij.plugin.filter: This class implements the Process/FFT/Custom Filter command.
FFTCustomFilter() - Constructor for class ij.plugin.filter.FFTCustomFilter
FFTFilter - Class in ij.plugin.filter: This class implements the Process/FFT/bandpass Filter command.
FFTFilter() - Constructor for class ij.plugin.filter.FFTFilter
FFTMath - Class in ij.plugin: The class implements the Process/FFT/Math command.
FFTMath() - Constructor for class ij.plugin.FFTMath
FHT - Class in ij.process: This class contains a Java implementation of the Fast Hartley Transform.
FHT(ImageProcessor) - Constructor for class ij.process.FHT: Constructs a FHT object from an ImageProcessor.
FILE - Static variable in interface ij.macro.MacroConstants
fileFormat - Variable in class ij.io.FileInfo
FileInfo - Class in ij.io: This class consists of public fields that describe an image file.
FileInfo() - Constructor for class ij.io.FileInfo: Creates a FileInfo object with all of its fields set to their default value.
fileInit(File, boolean) - Method in class nom.tam.fits.Fits: Get a stream from the file and then use the stream initialization.
fileName - Variable in class ij.io.FileInfo
fileName - Static variable in class ij.plugin.FFT
fileOffset - Variable in class nom.tam.fits.Data: The starting location of the data when last read
FileOpener - Class in ij.io: Opens or reverts an image specified by a FileInfo object.
FileOpener(FileInfo) - Constructor for class ij.io.FileOpener
FileSaver - Class in ij.io: Saves images in tiff, gif, jpeg, raw, zip and text format.
FileSaver(ImagePlus) - Constructor for class ij.io.FileSaver: Constructs a FileSaver from an ImagePlus.
fileTest() - Method in class nom.tam.fits.test.ImageTester
fileType - Variable in class ij.io.FileInfo
FILL - Static variable in interface ij.macro.MacroConstants
fill(ImageProcessor) - Method in class ij.plugin.filter.Filler
fill(ImageProcessor) - Method in class ij.process.ByteProcessor: Fills pixels that are within roi and part of the mask.
fill(ImageProcessor) - Method in class ij.process.ColorProcessor: Fills pixels that are within roi and part of the mask.
fill() - Method in class ij.process.ColorProcessor: Fills the current rectangular ROI.
fill() - Method in class ij.process.FloatProcessor: Fills the current rectangular ROI.
fill(ImageProcessor) - Method in class ij.process.FloatProcessor: Fills pixels that are within roi and part of the mask.
fill(int, int) - Method in class ij.process.FloodFiller: Does a 4-connected flood fill.
fill() - Method in class ij.process.ImageProcessor: Fills the image or ROI with the current fill/draw value.
fill(ImageProcessor) - Method in class ij.process.ImageProcessor: Fills pixels that are within the ROI and part of the mask (i.e.
fill(ImageProcessor, Rectangle) - Method in class ij.process.PolygonFiller: Fills the polygon using the ImageProcessor's current drawing color.
fill() - Method in class ij.process.ShortProcessor: Fills the current rectangular ROI.
fill(ImageProcessor) - Method in class ij.process.ShortProcessor: Fills pixels that are within roi and part of the mask.
fill8(int, int) - Method in class ij.process.FloodFiller: Does a 8-connected flood fill.
FILL_BLACK - Static variable in class ij.gui.NewImage
FILL_OVAL - Static variable in interface ij.macro.MacroConstants
FILL_RAMP - Static variable in class ij.gui.NewImage
FILL_RECT - Static variable in interface ij.macro.MacroConstants
FILL_WHITE - Static variable in class ij.gui.NewImage
Filler - Class in ij.plugin.filter: This plugin implements ImageJ's Fill, Clear, Clear Outside and Draw commands.
Filler() - Constructor for class ij.plugin.filter.Filler
fillFileData(Object, int, int, int) - Method in class nom.tam.image.ImageTiler: File a tile segment from a file.
fillHeader(Header) - Method in class nom.tam.fits.AsciiTable: Fill in a header with information that points to this data.
fillHeader(Header) - Method in class nom.tam.fits.BinaryTable: Update a FITS header to reflect the current state of the data.
fillHeader(Header) - Method in class nom.tam.fits.ImageData: Fill header with keywords that describe image data.
fillHeader(Header) - Method in class nom.tam.fits.RandomGroupsData
fillHeader(Header) - Method in class nom.tam.fits.UndefinedData: Fill header with keywords that describe data.
fillMemData(Object, int[], int, Object, int, int) - Method in class nom.tam.image.ImageTiler: Fill a single segment from memory.
fillOval(int, int, int, int) - Method in class ij.process.ImageProcessor: Fills an elliptical shape.
fillPolygon(Polygon) - Method in class ij.process.ImageProcessor: Fills a polygon.
fillTile(Object, Object, int[], int[], int[]) - Method in class nom.tam.image.ImageTiler: Fill the subset.
filter(int) - Method in class ij.process.ByteProcessor: Filters using a 3x3 neighborhood.
filter(int) - Method in class ij.process.ColorProcessor: 3x3 unweighted smoothing.
filter(int) - Method in class ij.process.FloatProcessor: Filters using a 3x3 neighborhood.
filter(int) - Method in class ij.process.ImageProcessor: A 3x3 filter operation, where the argument (BLUR_MORE, FIND_EDGES, etc.) determines the filter type.
filter(int) - Method in class ij.process.ShortProcessor: Filters using a 3x3 neighborhood.
FILTER - Static variable in class ij.Undo
filterRGB(int, double) - Method in class ij.process.ColorProcessor: Performs the specified 3x3 filter on the reg, green and blue planes.
Filters - Class in ij.plugin.filter: This plugin implements the Invert, Smooth, Sharpen, Find Edges, and Add Noise commands.
Filters() - Constructor for class ij.plugin.filter.Filters
FILTERS_MENU - Static variable in class ij.Menus
finalize() - Method in class nom.tam.util.BufferedFile: Clear up any pending output at cleanup.
find(double, double) - Method in class skyview.geometry.projecter.ToaProjecter
find(String) - Method in interface skyview.survey.SurveyFinder: Do we have this survey?
find(String) - Method in class skyview.survey.XMLSurveyFinder: Do we have this survey?
findCard(String) - Method in class nom.tam.fits.Header: Find the card associated with a given key.
findColumn(String) - Method in class nom.tam.fits.TableHDU
findEdges() - Method in class ij.process.ColorProcessor
findEdges() - Method in class ij.process.ImageProcessor: Finds edges in the image or ROI using a Sobel operator.
findFile(String) - Method in class skyview.survey.XMLSurveyFinder: Find the survey file given the short name
findImages(Image[], Image) - Method in class skyview.process.imagefinder.Border: Find the best image for each output pixel.
findImages(Image[], Image) - Method in class skyview.process.imagefinder.Checker: Find the best image for each output pixel.
findImages(Image[], Image) - Method in class skyview.process.ImageFinder: This is the basic method in the image finder.
findImages(Image[], Image) - Method in class skyview.process.imagefinder.MaxExposure: Find the appropriate images.
findImages(Image[], Image) - Method in class skyview.process.imagefinder.RecursiveImageFinder: Find the best image for each output pixel.
findImages(Image[], Image) - Method in class skyview.sia.Checker: Find the best image for each output pixel.
findKey(String) - Method in class nom.tam.fits.Header: Find the card associated with a given key.
findMaxima(ImageProcessor, double, double, int, boolean, boolean) - Method in class ij.plugin.filter.MaximumFinder: Here the processing is done: Find the maxima of an image (8, 16, 32 bit)
findMinAndMax() - Method in class ij.process.FloatProcessor: Calculates the minimum and maximum pixel value for the entire image.
findMinAndMax() - Method in class ij.process.ShortProcessor
findOffset(Object) - Static method in class nom.tam.fits.FitsUtil: Find out where we are in a random access file
FIRST_NUMERIC - Static variable in interface nom.tam.util.PrimitiveInfo: Index of first element of above arrays referring to a numeric type
firstCall - Variable in class skyview.process.imagefinder.Radius
fit(ImageProcessor, ImageStatistics) - Method in class ij.process.EllipseFitter: Fits an ellipse to the current ROI.
fitList - Static variable in class ij.measure.CurveFitter
FITS - Static variable in class ij.io.FileInfo
FITS - Static variable in class ij.io.Opener
Fits - Class in nom.tam.fits: This class provides access to routines to allow users to read and write FITS files.
Fits() - Constructor for class nom.tam.fits.Fits: Create an empty Fits object which is not associated with an input stream.
Fits(InputStream) - Constructor for class nom.tam.fits.Fits: Create a Fits object associated with the given uncompressed data stream.
Fits(InputStream, boolean) - Constructor for class nom.tam.fits.Fits: Create a Fits object associated with a possibly compressed data stream.
Fits(File) - Constructor for class nom.tam.fits.Fits: Associate FITS object with an uncompressed File
Fits(File, boolean) - Constructor for class nom.tam.fits.Fits: Associate the Fits object with a File
Fits(String) - Constructor for class nom.tam.fits.Fits: Associate the FITS object with a file or URL.
Fits(String, boolean) - Constructor for class nom.tam.fits.Fits: Associate the FITS object with a file or URL.
Fits(URL) - Constructor for class nom.tam.fits.Fits: Associate the FITS object with a given uncompressed URL
Fits(URL, boolean) - Constructor for class nom.tam.fits.Fits: Associate the FITS object with a given URL
FITS_Reader - Class in ij.plugin: Opens and displays FITS images.
FITS_Reader() - Constructor for class ij.plugin.FITS_Reader
FITS_Writer - Class in ij.plugin: This plugin saves a 16 or 32 bit image in FITS format.
FITS_Writer() - Constructor for class ij.plugin.FITS_Writer
FitsCopy - Class in nom.tam.fits.utilities
FitsCopy() - Constructor for class nom.tam.fits.utilities.FitsCopy
FitsDate - Class in nom.tam.fits
FitsDate(String) - Constructor for class nom.tam.fits.FitsDate: Convert a FITS date string to a Java Date object.
FitsElement - Interface in nom.tam.fits
FitsException - Exception in nom.tam.fits
FitsException() - Constructor for exception nom.tam.fits.FitsException
FitsException(String) - Constructor for exception nom.tam.fits.FitsException
FitsFactory - Class in nom.tam.fits: This class contains the code which associates particular FITS types with header and data configurations.
FitsFactory() - Constructor for class nom.tam.fits.FitsFactory
FitsHeap - Class in nom.tam.fits: This class supports the FITS heap.
FitsImage - Class in skyview.survey: This class defines an image gotten by reading a file
FitsImage(String) - Constructor for class skyview.survey.FitsImage
FitsImageFactory - Class in skyview.survey: A little class that creates FITS images using a factory method.
FitsImageFactory() - Constructor for class skyview.survey.FitsImageFactory
fitSpline(int) - Method in class ij.gui.PolygonRoi
FitsReader - Class in nom.tam.fits.utilities
FitsReader() - Constructor for class nom.tam.fits.utilities.FitsReader
FitsUtil - Class in nom.tam.fits: This class comprises static utility functions used throughout the FITS classes.
FitsUtil() - Constructor for class nom.tam.fits.FitsUtil
Fitter - Class in ij.plugin.frame: ImageJ plugin that does curve fitting using the modified CurveFitter class.
Fitter() - Constructor for class ij.plugin.frame.Fitter
fixedPoint(String) - Static method in class skyview.geometry.Projection: This static method returns the location of the default projection center for fixed point projections.
fixNewLines(String) - Static method in class ij.util.Tools: Converts carriage returns to line feeds.
flags - Variable in class ij.gui.ImageCanvas
flatten(Object) - Static method in class nom.tam.util.ArrayFuncs: Given an array of arbitrary dimensionality return the array flattened into a single dimension.
flipHorizontal() - Method in class ij.process.ImageProcessor: Flips the image or ROI horizontally.
flipHorizontal() - Method in class ij.process.StackProcessor
flipVertical() - Method in class ij.process.ByteProcessor
flipVertical() - Method in class ij.process.ColorProcessor
flipVertical() - Method in class ij.process.FloatProcessor
flipVertical() - Method in class ij.process.ImageProcessor: Flips the image or ROI vertically.
flipVertical() - Method in class ij.process.ShortProcessor
flipVertical() - Method in class ij.process.StackProcessor
fList - Static variable in class ij.measure.CurveFitter
FLOAT_INDEX - Static variable in interface nom.tam.util.PrimitiveInfo
floatArrayEquals(float[], float[], float) - Static method in class nom.tam.util.ArrayFuncs: Compare two float arrays using a given tolerance
FloatBlitter - Class in ij.process: This class does bit blitting of 32-bit floating-point images.
FloatBlitter(FloatProcessor) - Constructor for class ij.process.FloatBlitter: Constructs a FloatBlitter from a FloatProcessor.
FloatProcessor - Class in ij.process: This is an 32-bit floating-point image and methods that operate on that image.
FloatProcessor(int, int, float[], ColorModel) - Constructor for class ij.process.FloatProcessor: Creates a new FloatProcessor using the specified pixel array and ColorModel.
FloatProcessor(int, int) - Constructor for class ij.process.FloatProcessor: Creates a blank FloatProcessor using the default grayscale LUT that displays zero as black.
FloatProcessor(int, int, int[]) - Constructor for class ij.process.FloatProcessor: Creates a FloatProcessor from an int array using the default grayscale LUT.
FloatProcessor(int, int, double[]) - Constructor for class ij.process.FloatProcessor: Creates a FloatProcessor from a double array using the default grayscale LUT.
FloatProcessor(int, int, double[], double, double) - Constructor for class ij.process.FloatProcessor
FloatProcessor(float[][]) - Constructor for class ij.process.FloatProcessor: Creates a FloatProcessor from a float[][] array using the default LUT.
FloatProcessor(int[][]) - Constructor for class ij.process.FloatProcessor: Creates a FloatProcessor from an int[][] array.
FloatStatistics - Class in ij.process: 32-bit (float) image statistics, including histogram.
FloatStatistics(ImageProcessor) - Constructor for class ij.process.FloatStatistics: Constructs an ImageStatistics object from a FloatProcessor using the standard measurement options (area, mean, mode, min and max).
FloatStatistics(ImageProcessor, int, Calibration) - Constructor for class ij.process.FloatStatistics: Constructs a FloatStatistics object from a FloatProcessor using the specified measurement options.
FLOOD_FILL - Static variable in interface ij.macro.MacroConstants
floodFill - Variable in class ij.plugin.filter.ParticleAnalyzer
FloodFiller - Class in ij.process: This class, which does flood filling, is used by the floodFill() macro function and by the particle analyzer The Wikipedia at "http://en.wikipedia.org/wiki/Flood_fill" has a good description of the algorithm used here as well as examples in C and Java.
FloodFiller(ImageProcessor) - Constructor for class ij.process.FloodFiller
FLOOR - Static variable in interface ij.macro.MacroConstants
flush() - Method in class ij.ImagePlus: Sets the image arrays to null to help the garbage collector do its job.
flush() - Method in interface nom.tam.util.ArrayDataOutput
flush() - Method in class nom.tam.util.BufferedFile: Flush output buffer if necessary.
focusGained(FocusEvent) - Method in class ij.gui.GenericDialog
focusGained(FocusEvent) - Method in class ij.gui.ImageWindow
focusGained(FocusEvent) - Method in class ij.plugin.frame.PlugInFrame
focusGained(FocusEvent) - Method in class ij.plugin.Scaler
focusGained(FocusEvent) - Method in class ij.text.TextWindow
focusLost(FocusEvent) - Method in class ij.gui.GenericDialog
focusLost(FocusEvent) - Method in class ij.gui.ImageWindow
focusLost(FocusEvent) - Method in class ij.plugin.frame.PlugInFrame
focusLost(FocusEvent) - Method in class ij.plugin.Scaler
focusLost(FocusEvent) - Method in class ij.text.TextWindow
FolderOpener - Class in ij.plugin: Implements the File/Import/Image Sequence command, which opens a folder of images as a stack.
FolderOpener() - Constructor for class ij.plugin.FolderOpener
font - Variable in class ij.process.ImageProcessor
fontMetrics - Variable in class ij.process.ImageProcessor
Fonts - Class in ij.plugin.frame: Displays a window that allows the user to set the font, size and style.
Fonts() - Constructor for class ij.plugin.frame.Fonts
FOR - Static variable in interface ij.macro.MacroConstants
format(int, byte[]) - Method in class nom.tam.util.ByteFormatter: Format an int into an array.
format(int, byte[], int, int) - Method in class nom.tam.util.ByteFormatter: Format an int into an existing array.
format(long, byte[]) - Method in class nom.tam.util.ByteFormatter: Format a long into an array.
format(long, byte[], int, int) - Method in class nom.tam.util.ByteFormatter: Format a long into an existing array.
format(boolean, byte[]) - Method in class nom.tam.util.ByteFormatter: Format a boolean into an existing array.
format(boolean, byte[], int, int) - Method in class nom.tam.util.ByteFormatter: Format a boolean into an existing array
format(String, byte[]) - Method in class nom.tam.util.ByteFormatter: Insert a string at the beginning of an array
format(String, byte[], int, int) - Method in class nom.tam.util.ByteFormatter: Insert a String into an existing character array.
format(float, byte[]) - Method in class nom.tam.util.ByteFormatter: Format a float into an array.
format(float, byte[], int, int) - Method in class nom.tam.util.ByteFormatter: Format a float into an existing byteacter array.
format(double, byte[]) - Method in class nom.tam.util.ByteFormatter: Format a double into an array.
format(double, byte[], int, int) - Method in class nom.tam.util.ByteFormatter: Format a double into an existing character array.
format(double, int) - Method in class skyview.data.CoordinateFormatter
FormatException - Exception in nom.tam.util
formatted(String, int, boolean) - Method in class skyview.geometry.Position
fps - Variable in class ij.measure.Calibration: Frame rate in frames per second
FPS - Static variable in class ij.Prefs
FractalBoxCounter - Class in ij.plugin.filter: Calculate the so-called "capacity" fractal dimension.
FractalBoxCounter() - Constructor for class ij.plugin.filter.FractalBoxCounter
frame - Variable in class ij.gui.HistogramWindow
frameInterval - Variable in class ij.io.FileInfo
frameInterval - Variable in class ij.measure.Calibration: Frame interval in 'timeUnit's
FreehandRoi - Class in ij.gui: Freehand region of interest or freehand line of interest
FreehandRoi(int, int, ImagePlus) - Constructor for class ij.gui.FreehandRoi
FREELINE - Static variable in class ij.gui.Roi
FREELINE - Static variable in class ij.gui.Toolbar
freeMemory() - Static method in class ij.IJ: Runs the garbage collector and returns a string something like "64K of 256MB (25%)" that shows how much of the available memory is in use.
FREEROI - Static variable in class ij.gui.Roi
FREEROI - Static variable in class ij.gui.Toolbar
FROM_CHAR_CODE - Static variable in interface ij.macro.MacroConstants
fromOut - Variable in class skyview.process.imagefinder.Border: The transformation from the output pixels to the celestial sphere
fromOut - Variable in class skyview.process.imagefinder.Checker: The transformation from the output pixels to the celestial sphere
fromOut - Variable in class skyview.sia.Checker: The transformation from the output pixels to the celestial sphere
func(double) - Method in class skyview.data.Contourer.CSqrt
FUNCTION - Static variable in interface ij.macro.MacroConstants
functionIDs - Static variable in interface ij.macro.MacroConstants
Functions - Class in ij.macro: This class implements the built-in macro functions.
functions - Static variable in interface ij.macro.MacroConstants

G

Galactic - Static variable in class skyview.geometry.CoordinateSystem: Standard Galactic coordinates
GalacticCoordinateSystem - Class in skyview.geometry.csys: The class defining Galactic coordinate system.
GalacticCoordinateSystem() - Constructor for class skyview.geometry.csys.GalacticCoordinateSystem
gamma(double) - Method in class ij.process.FloatProcessor
gamma(double) - Method in class ij.process.ImageProcessor: Performs gamma correction of the image or ROI.
gamma(double) - Method in class ij.process.ShortProcessor
GAMMA_VARIATE - Static variable in class ij.measure.Calibration
GAMMA_VARIATE - Static variable in class ij.measure.CurveFitter
gapBetweenImages - Variable in class ij.io.FileInfo
GaussianBlur - Class in ij.plugin.filter: This plugin implements ImageJ's Gaussian Blur command.
GaussianBlur() - Constructor for class ij.plugin.filter.GaussianBlur
GelAnalyzer - Class in ij.plugin: This plugin generates gel profile plots that can be analyzed using the wand tool.
GelAnalyzer() - Constructor for class ij.plugin.GelAnalyzer
generateArray(Class, int[]) - Static method in class nom.tam.util.ArrayFuncs: Create an array and populate it with a test pattern.
genericClone(Object) - Static method in class nom.tam.util.ArrayFuncs: Clone an Object if possible.
GenericDialog - Class in ij.gui: This class is a customizable modal dialog box.
GenericDialog(String) - Constructor for class ij.gui.GenericDialog: Creates a new GenericDialog with the specified title.
GenericDialog(String, Frame) - Constructor for class ij.gui.GenericDialog: Creates a new GenericDialog using the specified title and parent frame.
get(String, String) - Static method in class ij.Prefs: Uses the keyword key to retrieve a string from the preferences file.
get(String, double) - Static method in class ij.Prefs: Uses the keyword key to retrieve a number from the preferences file.
get(String, boolean) - Static method in class ij.Prefs: Uses the keyword key to retrieve a boolean from the preferences file.
get(int, int) - Method in class ij.process.ByteProcessor
get(int, int) - Method in class ij.process.ColorProcessor
get(int, int) - Method in class ij.process.FloatProcessor
get(int, int) - Method in class ij.process.ImageProcessor: This is a faster version of getPixel() that does not do bounds checking.
get(int, int) - Method in class ij.process.ShortProcessor
get(Object) - Method in class nom.tam.util.HashedList: Return the value of a keyed entry.
get(int) - Method in class nom.tam.util.HashedList: Return the n'th entry from the beginning.
get(String) - Static method in class skyview.executive.Settings: Get a value corresponding to the key
get(String, String) - Static method in class skyview.executive.Settings: Get a values corresponding to a key or the default
GET_ARGUMENT - Static variable in interface ij.macro.MacroConstants
GET_BOOLEAN - Static variable in interface ij.macro.MacroConstants
GET_BOUNDING_RECT - Static variable in interface ij.macro.MacroConstants
GET_BOUNDS - Static variable in interface ij.macro.MacroConstants
GET_COORDINATES - Static variable in interface ij.macro.MacroConstants
GET_COUNT - Static variable in interface ij.macro.MacroConstants
GET_CURSOR_LOC - Static variable in interface ij.macro.MacroConstants
GET_DATE_AND_TIME - Static variable in interface ij.macro.MacroConstants
GET_DIRECTORY - Static variable in interface ij.macro.MacroConstants
GET_FILE_LIST - Static variable in interface ij.macro.MacroConstants
GET_FONT_LIST - Static variable in interface ij.macro.MacroConstants
GET_HEIGHT - Static variable in interface ij.macro.MacroConstants
GET_HISTOGRAM - Static variable in interface ij.macro.MacroConstants
GET_ID - Static variable in interface ij.macro.MacroConstants
GET_IMAGE_INFO - Static variable in interface ij.macro.MacroConstants
GET_INFO - Static variable in interface ij.macro.MacroConstants
GET_LINE - Static variable in interface ij.macro.MacroConstants
GET_LOCATION_AND_SIZE - Static variable in interface ij.macro.MacroConstants
GET_LUT - Static variable in interface ij.macro.MacroConstants
GET_METADATA - Static variable in interface ij.macro.MacroConstants
GET_MIN_AND_MAX - Static variable in interface ij.macro.MacroConstants
GET_NUMBER - Static variable in interface ij.macro.MacroConstants
GET_PIXEL - Static variable in interface ij.macro.MacroConstants
GET_PIXEL_SIZE - Static variable in interface ij.macro.MacroConstants
GET_PROFILE - Static variable in interface ij.macro.MacroConstants
GET_RAW_STATISTICS - Static variable in interface ij.macro.MacroConstants
GET_RESULT - Static variable in interface ij.macro.MacroConstants
GET_RESULT_LABEL - Static variable in interface ij.macro.MacroConstants
GET_SLICE_NUMBER - Static variable in interface ij.macro.MacroConstants
GET_STATE - Static variable in interface ij.macro.MacroConstants
GET_STATISTICS - Static variable in interface ij.macro.MacroConstants
GET_STRING - Static variable in interface ij.macro.MacroConstants
GET_THRESHOLD - Static variable in interface ij.macro.MacroConstants
GET_TIME - Static variable in interface ij.macro.MacroConstants
GET_TITLE - Static variable in interface ij.macro.MacroConstants
GET_VERSION - Static variable in interface ij.macro.MacroConstants
GET_VOXEL_SIZE - Static variable in interface ij.macro.MacroConstants
GET_WIDTH - Static variable in interface ij.macro.MacroConstants
GET_ZOOM - Static variable in interface ij.macro.MacroConstants
getAdditionalFunctions() - Static method in class ij.macro.Interpreter
getAngle() - Method in class ij.gui.PolygonRoi: Returns the angle in degrees between the first two segments of this polyline.
getAngle(int, int, int, int) - Method in class ij.gui.Roi: Returns the angle in degrees between the specified line and a horizontal line.
getApplet() - Static method in class ij.IJ: Returns the Applet that created this ImageJ or null if running as an application.
getArray(String) - Static method in class skyview.executive.Settings: Get the values corresponding to a key as an array of strings.
getAuthor() - Method in class nom.tam.fits.BasicHDU: Return the name of the person who compiled the information in the data associated with this header.
getAutoThreshold() - Method in class ij.process.ImageProcessor: Returns a pixel value (threshold) that can be used to divide the image into objects and background.
getAutoThreshold(int[]) - Method in class ij.process.ImageProcessor: This is a version of getAutoThreshold() that uses a histogram passed as an argument.
getAxes() - Method in class nom.tam.fits.BasicHDU
getBackgroundColor() - Static method in class ij.gui.Toolbar
getBaseArray(Object) - Static method in class nom.tam.util.ArrayFuncs: This routine returns the base array of a multi-dimensional array.
getBaseClass(Object) - Static method in class nom.tam.util.ArrayFuncs: This routine returns the base class of an object.
getBaseLength(Object) - Static method in class nom.tam.util.ArrayFuncs: This routine returns the size of the base element of an array.
getBases() - Method in class nom.tam.fits.BinaryTable
getBases() - Method in class nom.tam.util.ColumnTable: Get the base classes of the columns.
getBaseURL() - Method in class skyview.survey.NeatGenerator: Find the base URL for the SIAP service and adjust as needed
getBaseURL() - Method in class skyview.survey.SIAPGenerator: Find the base URL for this SIAP service
getBatchModeImage(int) - Static method in class ij.macro.Interpreter
getBatchModeImageCount() - Static method in class ij.macro.Interpreter
getBatchModeImageIDs() - Static method in class ij.macro.Interpreter
getBestIndex(Color) - Method in class ij.process.ColorProcessor: Always returns 0 since RGB images do not use LUTs.
getBestIndex(Color) - Method in class ij.process.ImageProcessor: Returns the LUT index that's the best match for this color.
getBitDepth() - Method in class ij.ImagePlus: Returns the bit depth, 8, 16, 24 (RGB) or 32.
getBitPix() - Method in class nom.tam.fits.BasicHDU
getBits(int) - Method in class ij.io.BitBuffer
getBlankValue() - Method in class nom.tam.fits.BasicHDU
getBlues() - Method in class ij.LookUpTable
getBoolean(String, boolean) - Static method in class ij.Prefs: Finds a boolean in IJ_Props or IJ_Prefs.txt.
getBoolean() - Method in class nom.tam.util.ByteParser: Get a boolean value from the beginning of the buffer
getBoolean(int) - Method in class nom.tam.util.ByteParser: Get a boolean value from a specified region of the buffer
getBooleanValue(String) - Method in class nom.tam.fits.Header: Get the boolean value associated with the given key.
getBooleanValue(String, boolean) - Method in class nom.tam.fits.Header: Get the boolean value associated with the given key.
getBoundingRect() - Method in class ij.gui.Roi: This obsolete method has been replaced by getBounds().
getBounds() - Method in class ij.gui.Roi: Return this selection's bounding rectangle.
getBrightness() - Method in class ij.process.ColorProcessor: Returns brightness as a FloatProcessor.
getBrushSize() - Static method in class ij.gui.Toolbar
getBScale() - Method in class nom.tam.fits.BasicHDU
getBuffer() - Method in class nom.tam.util.ByteParser: Get the buffer being used by the parser
getBUnit() - Method in class nom.tam.fits.BasicHDU
getByteRow(ImageStack, int, int, int, int, int, int[]) - Method in class ij.plugin.filter.Projector
getBytesPerPixel() - Method in class ij.io.FileInfo: Returns the number of bytes used per pixel.
getBZero() - Method in class nom.tam.fits.BasicHDU
getCalibration() - Method in class ij.ImagePlus: Returns this image's calibration.
getCalibrationTable() - Method in class ij.process.ImageProcessor: Returns the calibration table or null.
getCandidates() - Method in class skyview.executive.Imager: Get the candidate images that may be used for resampling
getCanvas() - Method in class ij.gui.ImageWindow
getCanvas() - Method in class ij.ImagePlus: Returns the ImageCanvas being used to display this image, or null.
getCard(int) - Method in class nom.tam.fits.Header: Deprecated. An iterator should be used for sequential access to the header.
getCatalogs() - Method in class skyview.vo.CatalogProcessor
getCelest(int) - Method in class skyview.process.imagefinder.Border: Get the celestial coordinates corresponding to a given pixel.
getCelest(int) - Method in class skyview.process.imagefinder.Checker: Get the celestial coordinates corresponding to a given pixel.
getCelest(int) - Method in class skyview.sia.Checker: Get the celestial coordinates corresponding to a given pixel.
getCenter(int) - Method in class skyview.survey.Image: Get the center position of the given output pixel
getCenter(int) - Method in class skyview.survey.ProxyImage: Get the center position of the given output pixel
getCenters() - Method in class skyview.process.imagefinder.Radius: Find the centers of the input images.
getChannel() - Method in class nom.tam.util.BufferedFile: Get the channel associated with this file.
getCheckboxes() - Method in class ij.gui.GenericDialog: Returns the Vector containing the Checkboxes.
getChoices() - Method in class ij.gui.GenericDialog: Returns the Vector containing the Choices.
getClassLoader() - Static method in class ij.IJ: Returns an instance of the class loader ImageJ uses to run plugins.
getClipboard() - Static method in class ij.ImagePlus: Returns the internal clipboard or null if the internal clipboard is empty.
getCode() - Method in class ij.macro.Program
getCoefficients() - Method in class ij.measure.Calibration: Returns the calibration function coefficients.
getColor() - Method in class ij.gui.ColorChooser: Displays a color selection dialog and returns the color selected by the user.
getColor() - Static method in class ij.gui.Roi: Returns the color used for drawing ROI outlines.
getColor() - Method in class ij.gui.Toolbar: Obsolete.
getColor(String, Color) - Static method in class ij.Prefs: Finds a color in IJ_Props or IJ_Prefs.txt.
getColor(int, int) - Method in class ij.process.ColorProcessor
getColorModel() - Method in class ij.ImageStack: Returns this stack's color model.
getColorModel() - Method in class ij.LookUpTable
getColorModel() - Method in class ij.process.ImageProcessor: Returns this processor's color model.
getColumn(int) - Method in class ij.measure.ResultsTable: Returns a copy of the given column as a float array.
getColumn(int, int, int[], int) - Method in class ij.process.ImageProcessor: Returns the pixel values down the column starting at (x,y).
getColumn(int) - Method in class nom.tam.fits.AsciiTable: Get a column of data
getColumn(int) - Method in class nom.tam.fits.BinaryTable: Get a given column
getColumn(int) - Method in interface nom.tam.fits.TableData
getColumn(String) - Method in class nom.tam.fits.TableHDU
getColumn(int) - Method in class nom.tam.fits.TableHDU
getColumn(int) - Method in class nom.tam.util.ColumnTable: Get a particular column.
getColumn(int) - Method in interface nom.tam.util.DataTable
getColumnFormat(int) - Method in class nom.tam.fits.TableHDU: Get the FITS type of a column in the table.
getColumnHeading(int) - Method in class ij.measure.ResultsTable: Returns the heading of the specified column or null if the column is empty.
getColumnHeadings() - Method in class ij.measure.ResultsTable: Returns a tab-delimited string containing the column headings.
getColumnHeadings() - Method in class ij.text.TextPanel: Returns the column headings as a tab-delimited string.
getColumnIndex(String) - Method in class ij.measure.ResultsTable: Returns the index of the first column with the given heading.
getColumnName(int) - Method in class nom.tam.fits.TableHDU: Get the name of a column in the table.
getColumns() - Method in class nom.tam.util.ColumnTable: Get the actual data arrays
getCommand() - Static method in class ij.Executer: Returns the last command executed.
getCommandOptions() - Static method in class ij.plugin.frame.Recorder: Use by GenericDialog to determine if any options have been recorded.
getCommands() - Static method in class ij.Menus: Returns the hashtable that associates commands with plugins.
getComment() - Method in class nom.tam.fits.HeaderCard: Return the comment from this card
getCompleteImage() - Method in class nom.tam.image.ImageTiler: Read the entire image into a multidimensional array.
getComplexTransform() - Method in class ij.process.FHT: Converts this FHT to a complex Fourier transform and returns it as a two slice stack.
getCoordinates() - Method in class skyview.geometry.Position: Get the coordinates in the standard (J2000) frame.
getCoordinates(String) - Method in class skyview.geometry.Position: Get the coordinates in a specified frame.
getCoordinateSystem() - Method in class skyview.geometry.WCS: Get the CoordinateSystem used in the WCS
getCopy() - Method in class ij.process.FHT: Returns a clone of this FHT.
getCorners(int) - Method in class skyview.survey.Image: Get the corners of the given output pixel
getCorners(int) - Method in class skyview.survey.ProxyImage: Get the corners of the given output pixel
getCount() - Method in class skyview.vo.ConeQuerier: Get the number of rows returned
getCounter() - Method in class ij.measure.ResultsTable: Returns the current value of the measurement counter.
getCounter() - Static method in class ij.plugin.filter.Analyzer: Returns the current measurement count.
getCreationDate() - Method in class nom.tam.fits.BasicHDU: Get the FITS file creation date as a Date object.
getCTable() - Method in class ij.measure.Calibration: Returns the calibration table.
getCurrentColorModel() - Method in class ij.process.ImageProcessor: Returns the current color model, which may have been modified by setMinAndMax() or setThreshold().
getCurrentImage() - Static method in class ij.WindowManager: Returns the active ImagePlus.
getCurrentPasteMode() - Static method in class ij.gui.Roi: Returns the current paste transfer mode.
getCurrentSlice() - Method in class ij.ImagePlus: Returns the current stack slice number or 1 if this is a single image.
getCurrentWindow() - Static method in class ij.WindowManager: Returns the active ImageWindow.
getCursorLoc() - Method in class ij.gui.ImageCanvas: Returns the current cursor location.
getCValue(int) - Method in class ij.measure.Calibration: Converts a raw pixel value to a density calibrated value.
getCValue(double) - Method in class ij.measure.Calibration: Converts a raw pixel value to a density calibrated value.
getData() - Method in class nom.tam.fits.AsciiTable: Get the ASCII table information.
getData() - Method in class nom.tam.fits.AsciiTableHDU: Return the FITS data structure associated with this HDU.
getData() - Method in class nom.tam.fits.BasicHDU: Get the associated Data object
getData() - Method in class nom.tam.fits.BinaryTable
getData() - Method in class nom.tam.fits.Data: Return the data array object.
getData(int, Object) - Method in class nom.tam.fits.FitsHeap: Get data from the heap.
getData() - Method in class nom.tam.fits.ImageData: Return the actual data.
getData() - Method in class nom.tam.fits.RandomGroupsData
getData() - Method in class nom.tam.fits.UndefinedData: Return the actual data.
getData(String) - Method in class skyview.data.Contourer: Get the data for the contourer
getData(int) - Method in class skyview.survey.DSSImage: Get a pixels data associated with the image.
getData(int) - Method in class skyview.survey.FitsImage: Defer reading the data until it is asked for.
getData(int) - Method in class skyview.survey.Image: Get a pixels data associated with the image.
getData(int) - Method in class skyview.survey.ProxyImage: Get a pixels data associated with the image.
getDataArray() - Method in class skyview.survey.DSSImage: Get the data as an array
getDataArray() - Method in class skyview.survey.Image: Get the data as an array
getDataArray() - Method in class skyview.survey.ProxyImage: Get the data as an array
getDataSize() - Method in class nom.tam.fits.Header: Return the size of the data including any needed padding.
getDecimalPlaces(double, double) - Static method in class ij.util.Tools: Returns the number of decimal places need to display two numbers.
getDefaultColorModel() - Method in class ij.process.ImageProcessor: Returns the default grayscale IndexColorModel.
getDefaultDirectory() - Static method in class ij.io.OpenDialog: Returns the current working directory, which may be null.
getDepth() - Method in class skyview.survey.Image: Get the number of planes in the image
getDepth() - Method in class skyview.survey.ProxyImage: Get the number of planes in the image
getDescription() - Method in interface skyview.Component: Get the description of this component.
getDescription() - Method in class skyview.data.BoxSmoother
getDescription() - Method in class skyview.geometry.Converter
getDescription() - Method in class skyview.geometry.csys.BesselianCoordinateSystem
getDescription() - Method in class skyview.geometry.csys.EclipticCoordinateSystem: Get a description of this component.
getDescription() - Method in class skyview.geometry.csys.GalacticCoordinateSystem: Get a description of the object.
getDescription() - Method in class skyview.geometry.csys.HelioeclipticCoordinateSystem: Get a description of the component.
getDescription() - Method in class skyview.geometry.csys.ICRSCoordinateSystem: Get a description of the object.
getDescription() - Method in class skyview.geometry.csys.JulianCoordinateSystem: Get a description of the object.
getDescription() - Method in class skyview.geometry.DepthSampler
getDescription() - Method in class skyview.geometry.distorter.DSSDistorter.DSSInvDistorter: Get a description of this component
getDescription() - Method in class skyview.geometry.distorter.DSSDistorter
getDescription() - Method in class skyview.geometry.Distorter: What does this object do?
getDescription() - Method in class skyview.geometry.distorter.NeatDistorter
getDescription() - Method in class skyview.geometry.projecter.AitProjecter.AitDeprojecter: Description of component
getDescription() - Method in class skyview.geometry.projecter.AitProjecter: A description of the component
getDescription() - Method in class skyview.geometry.projecter.ArcProjecter.ArcDeprojecter: Get the description of the compontent
getDescription() - Method in class skyview.geometry.projecter.ArcProjecter: Get a description for the component
getDescription() - Method in class skyview.geometry.projecter.CarProjecter.CarDeprojecter: Return a description of the component
getDescription() - Method in class skyview.geometry.projecter.CarProjecter: Return a description of the component
getDescription() - Method in class skyview.geometry.projecter.CscProjecter.CscDeprojecter: Get a description of the component
getDescription() - Method in class skyview.geometry.projecter.CscProjecter: Get a descrption of the component
getDescription() - Method in class skyview.geometry.projecter.HpxProjecter: Get a description of the component
getDescription() - Method in class skyview.geometry.projecter.HpxProjecter.HpxDeprojecter: Get a description of the component
getDescription() - Method in class skyview.geometry.projecter.SflProjecter: Return a description of the component
getDescription() - Method in class skyview.geometry.projecter.SflProjecter.SflDeprojecter: Return a description of the component
getDescription() - Method in class skyview.geometry.projecter.SinProjecter: Get a description of the component
getDescription() - Method in class skyview.geometry.projecter.SinProjecter.SinDeprojecter: Get a description of the component
getDescription() - Method in class skyview.geometry.projecter.StgProjecter: Get a description of the component
getDescription() - Method in class skyview.geometry.projecter.StgProjecter.TanDeprojecter: Get a description of the component
getDescription() - Method in class skyview.geometry.projecter.TanProjecter: Get a description of the component
getDescription() - Method in class skyview.geometry.projecter.TanProjecter.TanDeprojecter: Get a description of the component
getDescription() - Method in class skyview.geometry.projecter.ToaProjecter
getDescription() - Method in class skyview.geometry.projecter.ToaProjecter.ToaDeprojecter
getDescription() - Method in class skyview.geometry.projecter.ZeaProjecter: Get a description for the component
getDescription() - Method in class skyview.geometry.projecter.ZeaProjecter.ZeaDeprojecter: Get the description of the compontent
getDescription() - Method in class skyview.geometry.Rotater: Get a description of the component
getDescription() - Method in class skyview.geometry.sampler.ClipSampler
getDescription() - Method in class skyview.geometry.sampler.ComboSampler
getDescription() - Method in class skyview.geometry.sampler.LanczosSampler
getDescription() - Method in class skyview.geometry.sampler.LISampler
getDescription() - Method in class skyview.geometry.sampler.NNSampler
getDescription() - Method in class skyview.geometry.sampler.SplineSampler
getDescription() - Method in class skyview.geometry.Scaler: What is a descrition for this component?
getDescription() - Method in class skyview.geometry.spheredistorter.BesselianDistorter.BesselianInverseDistorter
getDescription() - Method in class skyview.geometry.spheredistorter.BesselianDistorter
getDescription() - Method in class skyview.geometry.SphereDistorter: What does this object do?
getDescription() - Method in class skyview.ij.IJProcessor
getDescription() - Method in class skyview.process.BackupMosaicker: Get a description of this component
getDescription() - Method in class skyview.process.deedger.BoundaryAverage: Get a description of this object
getDescription() - Method in class skyview.process.deedger.BoundaryMedian: Get a description of this object
getDescription() - Method in class skyview.process.deedger.BoundaryMedianDSS2: Get a description of this object
getDescription() - Method in class skyview.process.Deedger
getDescription() - Method in class skyview.process.deedger.ImageMedian: Get a description of this object
getDescription() - Method in class skyview.process.IDMosaic: Get a description of this component
getDescription() - Method in class skyview.process.imagefinder.Prefetcher
getDescription() - Method in class skyview.process.InfoPrint: Get a description of this component
getDescription() - Method in class skyview.process.Mosaicker: Get a description of this component
getDescription() - Method in class skyview.request.HTMLWriter
getDescription() - Method in class skyview.request.RGBWriter
getDescription() - Method in class skyview.sia.SIAWriter: Get a description of this component
getDescription() - Method in class skyview.survey.Image: Get a description of the object
getDescription() - Method in class skyview.survey.UserSurvey
getDescription() - Method in class skyview.survey.XMLSurvey: Get a description of the component
getDescription() - Method in class skyview.vo.CatalogPostProcessor
getDescription() - Method in class skyview.vo.CatalogProcessor
getDescriptionString() - Method in class ij.io.FileSaver: Returns a string containing information about the specified image.
getDescrition() - Method in class skyview.geometry.distorter.NeatDistorter.NeatInvDistorter
getDimens() - Method in class nom.tam.fits.BinaryTable
getDimensions() - Method in class ij.ImagePlus: Returns the dimensions of this image (width, height, nChannels, nSlices, nFrames) as a 5 element int array.
getDimensions(Object) - Static method in class nom.tam.util.ArrayFuncs: Find the dimensions of an object.
getDir(String) - Method in class ij.io.Opener
getDir(String) - Static method in class ij.Macro
getDirectory(String) - Static method in class ij.IJ: Returns the path to the home ("user.home"), startup (ImageJ directory), plugins, macros, temp, current or image directory if title is "home", "startup", "plugins", "macros", "temp", "current" or "image", otherwise, displays a dialog and returns the path to the directory selected by the user.
getDirectory() - Method in class ij.io.DirectoryChooser: Returns the directory selected by the user.
getDirectory() - Method in class ij.io.OpenDialog: Returns the selected directory.
getDirectory() - Method in class ij.io.SaveDialog: Returns the selected directory.
getDirectory() - Method in class ij.macro.Functions
getDistorter() - Method in class skyview.geometry.Projection: Get any distortion in the plane associated with this projection.
getDistorter() - Method in class skyview.geometry.WCS: Get the plane distorter used in the projection (or null)
getDoScaling() - Static method in class ij.process.ImageConverter: Returns true if scaling is enabled.
getDouble(String, double) - Static method in class ij.Prefs: Looks up a real number in IJ_Props or IJ_Prefs.txt.
getDouble() - Method in class nom.tam.util.ByteParser: Read in the buffer until a double is read.
getDouble(int) - Method in class nom.tam.util.ByteParser: Look for a double in the buffer.
getDoubleValue(String) - Method in class nom.tam.fits.Header: Get the double value associated with the given key.
getDoubleValue(String, double) - Method in class nom.tam.fits.Header: Get the double value associated with the given key.
getDummyHDU() - Static method in class nom.tam.fits.BasicHDU
getEdgeAdjustments() - Method in class skyview.executive.Imager: Get any adjustments made to image intensities to minimize edge effects.
getEditor() - Method in class ij.plugin.NewPlugin: Returns the Editor the newly created macro or plugin was opened in.
getElement(int, int) - Method in class nom.tam.fits.AsciiTable: Get a single element as a one-d array.
getElement(int, int) - Method in class nom.tam.fits.BinaryTable: Get a particular element from the table.
getElement(int, int) - Method in interface nom.tam.fits.TableData
getElement(int, int) - Method in class nom.tam.fits.TableHDU
getElement(int, int) - Method in class nom.tam.util.ColumnTable: Get a element of the table.
getElement(int, int) - Method in interface nom.tam.util.DataTable
getEpoch() - Method in class nom.tam.fits.BasicHDU: Deprecated. Replaced by getEquinox
getEquinox() - Method in class nom.tam.fits.BasicHDU: Get the equinox in years for the celestial coordinate system in which positions given in either the header or data are expressed.
getErrorMessage() - Method in class ij.gui.GenericDialog: Returns an error message if getNextNumber was unable to convert a string into a number, otherwise, returns null.
getf(int, int) - Method in class ij.process.ByteProcessor
getf(int, int) - Method in class ij.process.ColorProcessor
getf(int, int) - Method in class ij.process.FloatProcessor
getf(int, int) - Method in class ij.process.ImageProcessor
getf(int, int) - Method in class ij.process.ShortProcessor
getFD() - Method in class nom.tam.util.BufferedFile: Get the file descriptor associated with this stream.
getFeretsDiameter() - Method in class ij.gui.OvalRoi: Returns Feret's diameter, the greatest distance between any two points along the ROI boundary.
getFeretsDiameter() - Method in class ij.gui.PolygonRoi: Returns Feret's diameter, the greatest distance between any two points along the ROI boundary.
getFeretsDiameter() - Method in class ij.gui.Roi: Returns Feret's diameter, the greatest distance between any two points along the ROI boundary.
getFeretsDiameter() - Method in class ij.gui.ShapeRoi: Returns the maximum Feret diameter (i.e., the largest distance between the shape's boundaries).
getFileInfo() - Method in class ij.ImagePlus: Returns a FileInfo object containing information, including the pixel array, needed to save this image.
getFileInfo() - Method in class ij.io.ImportDialog: Displays the dialog and returns a FileInfo object that can be used to open the image.
getFileName() - Method in class ij.io.OpenDialog: Returns the selected file name.
getFileName() - Method in class ij.io.SaveDialog: Returns the selected file name.
getFileOffset() - Method in class nom.tam.fits.BasicHDU: Get the starting offset of the HDU
getFileOffset() - Method in class nom.tam.fits.Data: Get the file offset
getFileOffset() - Method in interface nom.tam.fits.FitsElement: Get the byte at which this element begins.
getFileOffset() - Method in class nom.tam.fits.FitsHeap: Get the file offset of the heap
getFileOffset() - Method in class nom.tam.fits.Header: Get the offset of this header
getFilePointer() - Method in class ij.io.RandomAccessStream
getFilePointer() - Method in class nom.tam.util.BufferedFile: Get the current offset into the file.
getFilePointer() - Method in interface nom.tam.util.RandomAccess: Get the current position in the stream
getFileSeparator() - Static method in class ij.Prefs: Returns the file.separator system property.
getFileType(String) - Method in class ij.io.Opener: Attempts to determine the image file type by looking for 'magic numbers' and the file name extension.
getFitGoodness() - Method in class ij.measure.CurveFitter: Get a measure of "goodness of fit" where 1.0 is best.
getFitsDateString() - Static method in class nom.tam.fits.FitsDate: Return the current date in FITS date format
getFitsDateString(Date) - Static method in class nom.tam.fits.FitsDate: Create FITS format date string Java Date object.
getFitsDateString(Date, boolean) - Static method in class nom.tam.fits.FitsDate: Create FITS format date string.
getFixedMax() - Static method in class ij.gui.ProfilePlot: Returns the profile plot y-axis max.
getFixedMin() - Static method in class ij.gui.ProfilePlot: Returns the profile plot y-axis min.
getFlatColumns() - Method in class nom.tam.fits.BinaryTable
getFlattenedColumn(int) - Method in class nom.tam.fits.BinaryTable: Get a column in flattened format.
getFloat() - Method in class nom.tam.util.ByteParser: Get a floating point value from the buffer.
getFloat(int) - Method in class nom.tam.util.ByteParser: Get a floating point value in a region of the buffer
getFloatArray() - Method in class ij.process.ImageProcessor
getFloatValue(String, float) - Method in class nom.tam.fits.Header: Get the float value associated with the given key.
getFloatValue(String) - Method in class nom.tam.fits.Header: Get the float value associated with the given key.
getFont() - Static method in class ij.gui.TextRoi: Returns the name of the current font.
getFont() - Static method in class ij.Menus
getFontMetrics() - Method in class ij.process.ImageProcessor: Returns the current FontMetrics.
getFontSize() - Static method in class ij.Menus: Returns the size (in points) used for the fonts in ImageJ menus.
getForegroundColor() - Static method in class ij.gui.Toolbar
getFrame(String) - Static method in class ij.WindowManager: Returns the frame with the specified title or null if a frame with that title is not found.
getFrameRate() - Static method in class ij.plugin.Animator: Returns the current animation speed in frames per second.
getFreeColumn(String) - Method in class ij.measure.ResultsTable: Sets the heading of the the first available column and returns that column's index.
getFrontWindow() - Static method in class ij.WindowManager: Returns the front most window or null.
getFunction() - Method in class ij.measure.Calibration: Returns the calibration function ID.
getGlobalCalibration() - Method in class ij.ImagePlus: Returns the system-wide calibration, or null.
getGlobals() - Method in class ij.macro.Program
getGreens() - Method in class ij.LookUpTable
getGroupCount() - Method in class nom.tam.fits.BasicHDU
getHDU(int) - Method in class nom.tam.fits.Fits: Return the n'th HDU.
getHeader() - Method in class nom.tam.fits.BasicHDU: Get the associated header
getHeader() - Method in class skyview.survey.FitsImage
getHeaderNaxis() - Method in class skyview.geometry.WCS
getHeapOffset() - Method in class nom.tam.fits.BinaryTable: What is the offset to the heap
getHeapSize() - Method in class nom.tam.fits.BinaryTable: What is the size of the heap -- including the offset from the end of the table data.
getHeight() - Method in class ij.ImagePlus
getHeight() - Method in class ij.ImageStack
getHeight() - Method in class ij.process.ImageProcessor: Returns the height of this image in pixels.
getHeight() - Method in class skyview.survey.Image: Get the height of the image
getHeight() - Method in class skyview.survey.ProxyImage: Get the height of the image
getHigherZoomLevel(double) - Static method in class ij.gui.ImageCanvas
getHistogram() - Method in class ij.gui.HistogramWindow
getHistogram() - Method in class ij.process.ByteProcessor
getHistogram(ImageProcessor) - Method in class ij.process.ByteProcessor
getHistogram() - Method in class ij.process.ColorProcessor
getHistogram(ImageProcessor) - Method in class ij.process.ColorProcessor
getHistogram() - Method in class ij.process.FloatProcessor: Not implemented.
getHistogram() - Method in class ij.process.ImageProcessor: Returns the histogram of the image or ROI.
getHistogram() - Method in class ij.process.ShortProcessor: Returns 65536 bin histogram of the current ROI, which can be non-rectangular.
getHistogramMax() - Method in class ij.process.ImageProcessor: Returns the maximum histogram value used for histograms of float images.
getHistogramMin() - Method in class ij.process.ImageProcessor: Returns the minimum histogram value used for histograms of float images.
getHistogramSize() - Method in class ij.process.ImageProcessor: Returns the number of float image histogram bins.
getHomeDir() - Static method in class ij.Prefs: Returns the path to the ImageJ directory.
getHSB(byte[], byte[], byte[]) - Method in class ij.process.ColorProcessor: Returns hue, saturation and brightness in 3 byte arrays.
getID() - Method in class ij.ImagePlus: Returns this image's unique numeric ID.
getIDList() - Static method in class ij.WindowManager: Returns a list of the IDs of open images.
getIDs() - Method in class skyview.vo.ConeQuerier: Get the specified IDs
getImage() - Static method in class ij.IJ: Returns a reference to the active image.
getImage() - Method in class ij.ImagePlus: Returns the current AWT image.
getImage(int) - Static method in class ij.WindowManager: For IDs less than zero, returns the ImagePlus with the specified ID.
getImage(String) - Static method in class ij.WindowManager: Returns the first image that has the specified title or null if it is not found.
getImage(Image, double[]) - Method in class skyview.process.imagefinder.Border: Convert an input unit vector to a position in an image.
getImage(Image, double[]) - Method in class skyview.process.imagefinder.Checker: Convert an input unit vector to a position in an image.
getImage(Image, double[]) - Method in class skyview.sia.Checker: Convert an input unit vector to a position in an image.
getImage() - Method in class skyview.survey.HDecompressor: Get decompressed image as a one-d array of ints.
getImageArray() - Method in class ij.ImageStack: Returns the stack as an array of 1D pixel arrays.
getImageCount() - Static method in class ij.WindowManager: Returns the number of open images.
getImageData() - Method in class skyview.executive.Imager: Get the output data as 1-d double array
getImageInfo(ImagePlus, ImageProcessor) - Method in class ij.plugin.filter.Info
getImagePlus() - Method in class ij.gui.ImageWindow
getImagePlus() - Method in class ij.gui.Plot: Returns the plot as an ImagePlus.
getImager() - Static method in class skyview.executive.Imager: Get an Imager object -- normally the last one created.
getImages(double, double, double, ArrayList<String>) - Method in class skyview.survey.DSS2ImageGenerator
getImages(double, double, double, ArrayList<String>) - Method in interface skyview.survey.ImageGenerator
getImages(double, double, double, ArrayList<String>) - Method in class skyview.survey.SIAPGenerator: Get images from a SIAP service
getImages(Position, double) - Method in interface skyview.survey.Survey: Find a list of images that are within size of the given position.
getImages(double, double, double, ArrayList<String>) - Method in class skyview.survey.TwoMASSGenerator: Get images from a SIAP service
getImages(Position, double) - Method in class skyview.survey.UserSurvey
getImages(Position, double) - Method in class skyview.survey.XMLSurvey: Find candidate images from this survey.
getImageStack() - Method in class ij.ImagePlus: Returns the base image stack.
getImageStackSize() - Method in class ij.ImagePlus: If this is a stack, returns the actual number of images in the stack, else returns 1.
getImagesURL() - Static method in class ij.Prefs: Returns the URL of the directory that contains the ImageJ sample images.
getIndexSampleModel() - Method in class ij.process.ImageProcessor
getInfo(boolean) - Method in class ij.macro.Functions
getInitialMagnification() - Method in class ij.gui.ImageWindow
getInputDimension() - Method in class skyview.geometry.Converter: Get the dimensionality of the input vectors.
getInputDimension() - Method in class skyview.geometry.Deprojecter: What is the input dimensionality of a deprojecter?
getInputDimension() - Method in class skyview.geometry.Distorter: What is the input dimensionality of a Distorter?
getInputDimension() - Method in class skyview.geometry.Projecter: What is the input dimensionality of a projecter?
getInputDimension() - Method in class skyview.geometry.Rotater: Get the input dimension to a Rotater
getInputDimension() - Method in class skyview.geometry.Scaler: What is the dimensionality of the input to a Scaler
getInputDimension() - Method in class skyview.geometry.SphereDistorter: What is the input dimensionality of a Distorter?
getInputDimension() - Method in class skyview.geometry.Transformer: Get the dimensionality of the input vectors.
getInsets() - Method in class ij.gui.GenericDialog
getInsets() - Method in class ij.gui.ImageWindow: Override Container getInsets() to make room for some text above the image.
getInstance() - Static method in class ij.gui.Toolbar: Returns a reference to the ImageJ toolbar.
getInstance() - Static method in class ij.IJ: Returns a reference to the "ImageJ" frame.
getInstance() - Static method in class ij.macro.Interpreter
getInstance() - Static method in class ij.plugin.frame.RoiManager: Returns a reference to the ROI Manager or null if it is not open.
getInstrument() - Method in class nom.tam.fits.BasicHDU: Get the name of the instrument which was used to acquire the data in this FITS file.
getInt(String, int) - Static method in class ij.Prefs: Finds an int in IJ_Props or IJ_Prefs.txt.
getInt(int) - Method in class nom.tam.util.ByteParser: Convert a region of the buffer to an integer
getInt() - Method in class nom.tam.util.ByteParser: Look for an integer at the beginning of the buffer
getIntArray() - Method in class ij.process.ImageProcessor
getInterpolate() - Method in class ij.process.ImageProcessor: Returns the value of the interpolate field.
getInterpolatedPixel(double, double) - Method in class ij.process.ByteProcessor: Uses bilinear interpolation to find the pixel value at real coordinates (x,y).
getInterpolatedPixel(double, double) - Method in class ij.process.ColorProcessor: Calls getPixelValue(x,y).
getInterpolatedPixel(double, double) - Method in class ij.process.FloatProcessor: Uses bilinear interpolation to find the pixel value at real coordinates (x,y).
getInterpolatedPixel(double, double) - Method in class ij.process.ImageProcessor: Uses bilinear interpolation to find the pixel value at real coordinates (x,y).
getInterpolatedPixel(double, double) - Method in class ij.process.ShortProcessor: Uses bilinear interpolation to find the pixel value at real coordinates (x,y).
getInterpolatedRGBPixel(double, double) - Method in class ij.process.ColorProcessor: Uses bilinear interpolation to find the pixel value at real coordinates (x,y).
getInterpolatedValue(double, double) - Method in class ij.process.ImageProcessor: Uses bilinear interpolation to find the pixel value at real coordinates (x,y).
getIntValue(String, int) - Method in class nom.tam.fits.Header: Get the value associated with the key as an int.
getIntValue(String) - Method in class nom.tam.fits.Header: Get the int value associated with the given key.
getIterations() - Method in class ij.measure.CurveFitter: Get number of iterations performed
getKernel() - Method in class nom.tam.fits.BasicHDU: Get the non-FITS data object
getKernel() - Method in class nom.tam.fits.Data: Return the non-FITS data object
getKey(int) - Method in class nom.tam.fits.Header: Deprecated. An iterator should be used for sequential access to the header.
getKey() - Method in class nom.tam.fits.HeaderCard: Return the keyword from this card
getKeys() - Static method in class skyview.executive.Settings: Return the array of keys in the current settings
getLabel(int) - Method in class ij.measure.ResultsTable: Returns the label of the specified row.
getLabels() - Method in class skyview.data.Gridder: Get the labels for the lines
getLastBatchModeImage() - Static method in class ij.macro.Interpreter
getLastProcessor() - Static method in class skyview.vo.CatalogProcessor
getLat() - Method in class skyview.executive.Imager: Get the central latitude/declination of the output image
getLength() - Method in class ij.gui.Line: Returns the length of this line.
getLength() - Method in class ij.gui.OvalRoi: Returns the perimeter length.
getLength() - Method in class ij.gui.PolygonRoi: Returns the perimeter (for ROIs) or length (for lines).
getLength() - Method in class ij.gui.Roi: Returns the perimeter length.
getLength() - Method in class ij.gui.ShapeRoi: Returns the length of this shape (perimeter, if shape is closed).
getLine(double, double, double, double) - Method in class ij.process.ImageProcessor: Returns an array containing the pixel values along the line starting at (x1,y1) and ending at (x2,y2).
getLine(int) - Method in class ij.text.TextPanel: Returns the specified line as a string.
getLineCount() - Method in class ij.text.TextPanel: Returns the number of lines of text in this TextPanel.
getLines() - Method in class skyview.data.Gridder: Get the line points
getList() - Method in class ij.plugin.frame.RoiManager: Returns the selection list.
getLocalCalibration() - Method in class ij.ImagePlus: Returns this image's local calibration, ignoring the "Global" calibration flag.
getLocation(String) - Static method in class ij.Prefs: Uses the keyword key to retrieve a location from the preferences file.
getLocationAsString(int, int) - Method in class ij.ImagePlus: Converts the current cursor location to a string.
getLon() - Method in class skyview.executive.Imager: Get the central longitude/RA of the output image
getLong(int) - Method in class nom.tam.util.ByteParser: Look for a long in a specified region of the buffer
getLongValue(String) - Method in class nom.tam.fits.Header: Get the long value associated with the given key.
getLongValue(String, long) - Method in class nom.tam.fits.Header: Get the long value associated with the given key.
getLowerZoomLevel(double) - Static method in class ij.gui.ImageCanvas
getLutUpdateMode() - Method in class ij.process.ImageProcessor: Returns the LUT update mode, which can be RED_LUT, BLACK_AND_WHITE_LUT, OVER_UNDER_LUT or NO_LUT_UPDATE.
getMacroCount() - Method in class ij.plugin.MacroInstaller
getMacroShortcuts() - Static method in class ij.Menus: Returns the hashtable that associates keyboard shortcuts with macros.
getMacrosMenu() - Static method in class ij.Menus
getMacrosPath() - Static method in class ij.Menus: Returns the path to the macros directory or null if the macros directory was not found.
getMagnification() - Method in class ij.gui.ImageCanvas
getMapSize() - Method in class ij.LookUpTable
getMask() - Method in class ij.gui.OvalRoi
getMask() - Method in class ij.gui.PointRoi
getMask() - Method in class ij.gui.PolygonRoi: Override Roi.nudge() to support splines.
getMask() - Method in class ij.gui.Roi
getMask() - Method in class ij.gui.ShapeRoi: Returns this ROI's mask pixels as a ByteProcessor with pixels "in" the mask set to white (255) and pixels "outside" the mask set to black (0).
getMask() - Method in class ij.ImagePlus: For images with irregular ROIs, returns a byte mask, otherwise, returns null.
getMask() - Method in class ij.process.ImageProcessor: For images with irregular ROIs, returns a mask, otherwise, returns null.
getMask(int, int) - Method in class ij.process.PolygonFiller: Returns a byte mask containing a filled version of the polygon.
getMaskArray() - Method in class ij.process.ImageProcessor: Returns the mask byte array, or null if there is no mask.
getMatrix() - Method in class skyview.geometry.Rotater: Return the double coefficients for the matrix
getMax() - Method in class ij.gui.ProfilePlot: Returns the calculated maximum value.
getMax(double[]) - Static method in class ij.measure.CurveFitter: Gets index of highest value in an array.
getMax() - Method in class ij.process.ByteProcessor: Returns the largest displayed pixel value.
getMax() - Method in class ij.process.ColorProcessor: Returns the largest displayed pixel value.
getMax() - Method in class ij.process.FloatProcessor: Returns the largest displayed pixel value.
getMax() - Method in class ij.process.ImageProcessor: Returns the largest displayed pixel value.
getMax() - Method in class ij.process.ShortProcessor: Returns the largest displayed pixel value.
getMaximumBounds() - Method in class ij.gui.ImageWindow
getMaximumValue() - Method in class nom.tam.fits.BasicHDU: Return the minimum valid value in the array.
getMaxIterations() - Method in class ij.measure.CurveFitter: Get maximum number of iterations allowed
getMaxOutput() - Method in class skyview.util.Scaler
getMaxThreshold() - Method in class ij.process.ImageProcessor: Returns the upper threshold level.
getMaxVal() - Method in class skyview.util.Scaler
getMeasurements() - Static method in class ij.plugin.filter.Analyzer
getMemoryImage() - Method in class nom.tam.fits.ImageData.ImageDataTiler
getMemoryImage() - Method in class nom.tam.image.ImageTiler: See if we can get the image data from memory.
getMemorySetting() - Method in class ij.plugin.Memory
getMenuBar() - Static method in class ij.Menus
getMenus() - Method in class ij.macro.Program
getMessage() - Method in class ij.gui.GenericDialog: Returns a reference to the Label or MultiLineLabel created by addMessage(), or null if addMessage() was not called.
getMin() - Method in class ij.gui.ProfilePlot: Returns the calculated minimum value.
getMin() - Method in class ij.process.ByteProcessor: Returns the smallest displayed pixel value.
getMin() - Method in class ij.process.ColorProcessor: Returns the smallest displayed pixel value.
getMin() - Method in class ij.process.FloatProcessor: Returns the smallest displayed pixel value.
getMin() - Method in class ij.process.ImageProcessor: Returns the smallest displayed pixel value.
getMin() - Method in class ij.process.ShortProcessor: Returns the smallest displayed pixel value.
getMinimumSize() - Method in class ij.gui.MultiLineLabel
getMinimumSize() - Method in class ij.gui.Toolbar
getMinimumSize() - Method in class ij.gui.TrimmedButton
getMinimumValue() - Method in class nom.tam.fits.BasicHDU: Return the minimum valid value in the array.
getMinMax(double[]) - Static method in class ij.util.Tools
getMinMax(float[]) - Static method in class ij.util.Tools
getMinOutput() - Method in class skyview.util.Scaler
getMinThreshold() - Method in class ij.process.ImageProcessor: Returns the lower threshold level.
getMinVal() - Method in class skyview.util.Scaler
getModifiers() - Method in class ij.gui.ImageCanvas: Returns the mouse event modifiers.
getName() - Method in class ij.gui.Roi: Returns the name of this ROI, or null.
getName(String) - Method in class ij.io.Opener
getName(String) - Static method in class ij.Macro
getName(String) - Method in class ij.plugin.ClassChecker
getName(String) - Static method in class ij.plugin.frame.RoiManager: Returns the name of the selection with the specified index.
getName() - Method in class ij.plugin.TextReader: Returns the file name.
getName() - Method in interface skyview.Component: Get the name of this component.
getName() - Method in class skyview.data.BoxSmoother
getName() - Method in class skyview.geometry.Converter
getName() - Method in class skyview.geometry.csys.BesselianCoordinateSystem
getName() - Method in class skyview.geometry.csys.EclipticCoordinateSystem: Get the name of this component.
getName() - Method in class skyview.geometry.csys.GalacticCoordinateSystem: Get the name of this object.
getName() - Method in class skyview.geometry.csys.HelioeclipticCoordinateSystem: Get the name of the component.
getName() - Method in class skyview.geometry.csys.ICRSCoordinateSystem: Get the name of this object.
getName() - Method in class skyview.geometry.csys.JulianCoordinateSystem: Get the name of this object.
getName() - Method in class skyview.geometry.DepthSampler
getName() - Method in class skyview.geometry.distorter.DSSDistorter.DSSInvDistorter: Get the name of this component
getName() - Method in class skyview.geometry.distorter.DSSDistorter: Get the name of this component
getName() - Method in class skyview.geometry.Distorter: A name for this object
getName() - Method in class skyview.geometry.distorter.NeatDistorter
getName() - Method in class skyview.geometry.distorter.NeatDistorter.NeatInvDistorter
getName() - Method in class skyview.geometry.projecter.AitProjecter.AitDeprojecter: Name of component
getName() - Method in class skyview.geometry.projecter.AitProjecter: The name of the Component
getName() - Method in class skyview.geometry.projecter.ArcProjecter.ArcDeprojecter: Get the name of the component
getName() - Method in class skyview.geometry.projecter.ArcProjecter: Get a name for the component
getName() - Method in class skyview.geometry.projecter.CarProjecter.CarDeprojecter: Get the name of the compontent
getName() - Method in class skyview.geometry.projecter.CarProjecter: Get the name of the compontent
getName() - Method in class skyview.geometry.projecter.CscProjecter.CscDeprojecter: Get the name of the component
getName() - Method in class skyview.geometry.projecter.CscProjecter: Get the name of the component
getName() - Method in class skyview.geometry.projecter.HpxProjecter: Get the name of the compontent
getName() - Method in class skyview.geometry.projecter.HpxProjecter.HpxDeprojecter: Get the name of the component
getName() - Method in class skyview.geometry.projecter.SflProjecter: Get the name of the compontent
getName() - Method in class skyview.geometry.projecter.SflProjecter.SflDeprojecter: Get the name of the compontent
getName() - Method in class skyview.geometry.projecter.SinProjecter: Get the name of the component
getName() - Method in class skyview.geometry.projecter.SinProjecter.SinDeprojecter: Get the name of the component
getName() - Method in class skyview.geometry.projecter.StgProjecter: Get the name of the compontent
getName() - Method in class skyview.geometry.projecter.StgProjecter.TanDeprojecter: Get the name of the component
getName() - Method in class skyview.geometry.projecter.TanProjecter: Get the name of the compontent
getName() - Method in class skyview.geometry.projecter.TanProjecter.TanDeprojecter: Get the name of the component
getName() - Method in class skyview.geometry.projecter.ToaProjecter
getName() - Method in class skyview.geometry.projecter.ToaProjecter.ToaDeprojecter
getName() - Method in class skyview.geometry.projecter.ZeaProjecter: Get a name for the component
getName() - Method in class skyview.geometry.projecter.ZeaProjecter.ZeaDeprojecter: Get the name of the component
getName() - Method in class skyview.geometry.Rotater: Get the name of the component
getName() - Method in class skyview.geometry.sampler.ClipSampler
getName() - Method in class skyview.geometry.sampler.ComboSampler
getName() - Method in class skyview.geometry.sampler.LanczosSampler
getName() - Method in class skyview.geometry.sampler.LISampler
getName() - Method in class skyview.geometry.sampler.NNSampler
getName() - Method in class skyview.geometry.sampler.SplineSampler
getName() - Method in class skyview.geometry.Scaler: What is a name for this component?
getName() - Method in class skyview.geometry.spheredistorter.BesselianDistorter.BesselianInverseDistorter
getName() - Method in class skyview.geometry.spheredistorter.BesselianDistorter
getName() - Method in class skyview.geometry.SphereDistorter: A name for this object
getName() - Method in class skyview.ij.IJProcessor
getName() - Method in class skyview.process.BackupMosaicker: Get the name of this component
getName() - Method in class skyview.process.deedger.BoundaryAverage: Get a name for this object
getName() - Method in class skyview.process.deedger.BoundaryMedian: Get a name for this object
getName() - Method in class skyview.process.deedger.BoundaryMedianDSS2: Get a name for this object
getName() - Method in class skyview.process.Deedger
getName() - Method in class skyview.process.deedger.ImageMedian: Get a name for this object
getName() - Method in class skyview.process.IDMosaic: Get the name of this component
getName() - Method in class skyview.process.imagefinder.Prefetcher
getName() - Method in class skyview.process.InfoPrint
getName() - Method in class skyview.process.Mosaicker: Get the name of this component
getName() - Method in class skyview.request.HTMLWriter
getName() - Method in class skyview.request.RGBWriter
getName() - Method in class skyview.sia.SIAWriter
getName() - Method in class skyview.survey.Image: Get the name of the image
getName() - Method in class skyview.survey.ProxyImage: Get the name of the image
getName() - Method in class skyview.survey.UserSurvey
getName() - Method in class skyview.survey.XMLSurvey: Get the name of the compontent
getName() - Method in class skyview.vo.CatalogPostProcessor
getName() - Method in class skyview.vo.CatalogProcessor
getNChannels() - Method in class ij.ImagePlus: Returns the number of channels.
getNCols() - Method in class nom.tam.fits.AsciiTable: Get the number of columns in the table
getNCols() - Method in class nom.tam.fits.BinaryTable: Get the number of columns in the table.
getNCols() - Method in interface nom.tam.fits.TableData
getNCols() - Method in class nom.tam.fits.TableHDU: Get the number of columns for this table
getNCols() - Method in class nom.tam.util.ColumnTable: Get the number of columns in the table.
getNCols() - Method in interface nom.tam.util.DataTable
getNCoordinates() - Method in class ij.gui.PolygonRoi: Returns the number of XY coordinates.
getNextBoolean() - Method in class ij.gui.GenericDialog: Returns the state of the next checkbox.
getNextChoice() - Method in class ij.gui.GenericDialog: Returns the selected item in the next popup menu.
getNextChoiceIndex() - Method in class ij.gui.GenericDialog: Returns the index of the selected item in the next popup menu.
getNextNumber() - Method in class ij.gui.GenericDialog: Returns the contents of the next numeric field.
getNextString() - Method in class ij.gui.GenericDialog: Returns the contents of the next text field.
getNextText() - Method in class ij.gui.GenericDialog: Returns the contents of the next text area.
getNFrames() - Method in class ij.ImagePlus: Returns the number of frames (time-points).
getNonImageWindows() - Static method in class ij.WindowManager: Returns an array containing a list of the non-image windows.
getNRows() - Method in class nom.tam.fits.AsciiTable: Get the number of rows in the table
getNRows() - Method in class nom.tam.fits.BinaryTable: Get the number of rows in the table
getNRows() - Method in interface nom.tam.fits.TableData
getNRows() - Method in class nom.tam.fits.TableHDU: Get the number of rows for this table
getNRows() - Method in class nom.tam.util.ColumnTable: Get the number of rows in the table.
getNRows() - Method in interface nom.tam.util.DataTable
getNSlices() - Method in class ij.ImagePlus: Returns the image depth (number of z-slices).
getNthImageID(int) - Static method in class ij.WindowManager: Returns the ID of the Nth open image.
getNumber(String, double) - Static method in class ij.IJ: Allows the user to enter a number in a dialog box.
getNumberLength() - Method in class nom.tam.util.ByteParser: Get the number of characters used to parse the previous number (or the length of the previous String returned).
getNumberOfCards() - Method in class nom.tam.fits.Header: Find the number of cards in the header
getNumberOfHDUs() - Method in class nom.tam.fits.Fits: Get the current number of HDUs in the Fits object.
getNumberOfRows() - Method in class nom.tam.util.ColumnTable: Calculate the number of rows to read/write at a time.
getNumericFields() - Method in class ij.gui.GenericDialog: Returns the Vector containing the numeric TextFields.
getNumParams() - Method in class ij.measure.CurveFitter: Get number of parameters for current fit function
getNx() - Method in class skyview.survey.HDecompressor: Get the X-dimension of the decompressed image.
getNy() - Method in class skyview.survey.HDecompressor: Get the Y-dimension of the decompressed image.
getObject() - Method in class nom.tam.fits.BasicHDU: Get the name of the observed object in this FITS file.
getObservationDate() - Method in class nom.tam.fits.BasicHDU: Get the FITS file observation date as a Date object.
getObserver() - Method in class nom.tam.fits.BasicHDU: Get the name of the person who acquired the data in this FITS file.
getOffset(int[], int[]) - Static method in class nom.tam.image.ImageTiler: Get the offset of a given position.
getOffset() - Method in class nom.tam.util.ByteParser: Get the current offset
getOpenUsingPlugins() - Static method in class ij.io.Opener: Returns the state of the openUsingPlugins flag.
getOptions() - Static method in class ij.Macro: If a command started using run(name, options) is running, returns the options string, otherwise, returns null.
getOrigin() - Method in class nom.tam.fits.BasicHDU: Get the name of the organization which created this FITS file.
getOriginalFileInfo() - Method in class ij.ImagePlus: Returns the FileInfo object that was used to open this image.
getOutputDimension() - Method in class skyview.geometry.Converter: Get the dimensionality of the output vectors.
getOutputDimension() - Method in class skyview.geometry.Deprojecter: What is the output dimensionality of a deprojecter?
getOutputDimension() - Method in class skyview.geometry.Distorter: What is the output dimensionality of a Distorter?
getOutputDimension() - Method in class skyview.geometry.Projecter: What is the output dimensionality of a projecter?
getOutputDimension() - Method in class skyview.geometry.Rotater: Get the output dimension to a Rotater
getOutputDimension() - Method in class skyview.geometry.Scaler: What is the dimensionality of the output of a Scaler
getOutputDimension() - Method in class skyview.geometry.SphereDistorter: What is the output dimensionality of a Distorter?
getOutputDimension() - Method in class skyview.geometry.Transformer: Get the dimensionality of the output vectors.
getParameterCount() - Method in class nom.tam.fits.BasicHDU
getParams() - Method in class ij.measure.CurveFitter: Get the set of parameter values from the best corner of the simplex
getParams() - Method in class skyview.geometry.Scaler
getPasteMode() - Method in class ij.gui.Roi: Returns the current paste transfer mode, or NOT_PASTING (-1) if no paste operation is in progress.
getPixel(int, int) - Method in class ij.ImagePlus: Returns the pixel value at (x,y) as a 4 element array.
getPixel(int, int) - Method in class ij.process.ByteProcessor
getPixel(int, int) - Method in class ij.process.ColorProcessor
getPixel(int, int, int[]) - Method in class ij.process.ColorProcessor: Returns the 3 samples for the pixel at (x,y) in an array of int.
getPixel(int, int) - Method in class ij.process.FloatProcessor: Returns a pixel value that must be converted using Float.intBitsToFloat().
getPixel(int, int, int[]) - Method in class ij.process.FloatProcessor: Returns the value of the pixel at (x,y) in a one element int array.
getPixel(int, int) - Method in class ij.process.ImageProcessor: Returns the value of the pixel at (x,y).
getPixel(int, int, int[]) - Method in class ij.process.ImageProcessor: Returns the samples for the pixel at (x,y) in an int array.
getPixel(int, int) - Method in class ij.process.ShortProcessor
getPixelDepth() - Method in class skyview.executive.Imager: Get the energy depth of the output image
getPixelHeight() - Method in class skyview.executive.Imager: Get the height of the output image in pixels
getPixels() - Method in class ij.gui.Line: Returns the pixel values along this line.
getPixels(int) - Method in class ij.ImageStack: Returns the pixel array for the specified slice, were 1<=n<=nslices.
getPixels() - Method in class ij.process.ByteProcessor: Returns a reference to the byte array containing this image's pixel data.
getPixels() - Method in class ij.process.ColorProcessor: Returns a reference to the int array containing this image's pixel data.
getPixels() - Method in class ij.process.FloatProcessor: Returns a reference to the float array containing this image's pixel data.
getPixels() - Method in class ij.process.ImageProcessor: Returns a reference to this image's pixel array.
getPixels() - Method in class ij.process.ShortProcessor: Returns a reference to the short array containing this image's pixel data.
getPixels() - Method in class skyview.vo.CatalogProcessor
getPixelsCopy() - Method in class ij.process.ByteProcessor: Returns a reference to this image's snapshot (undo) array if it is not null and 'snapshotCopyMode' is true.
getPixelsCopy() - Method in class ij.process.ColorProcessor: Returns a reference to this image's snapshot (undo) array if it is not null and 'snapshotCopyMode' is true.
getPixelsCopy() - Method in class ij.process.FloatProcessor: Returns a reference to this image's snapshot (undo) array if it is not null and 'snapshotCopyMode' is true.
getPixelsCopy() - Method in class ij.process.ImageProcessor: Returns a reference to this image's snapshot (undo) array if it is not null and 'snapshotCopyMode' is true.
getPixelsCopy() - Method in class ij.process.ShortProcessor: Returns a reference to this image's snapshot (undo) array if it is not null and 'snapshotCopyMode' is true.
getPixelValue(int, int) - Method in class ij.process.ByteProcessor
getPixelValue(int, int) - Method in class ij.process.ColorProcessor: Converts the specified pixel to grayscale using the formula g=(r+g+b)/3 and returns it as a float.
getPixelValue(int, int) - Method in class ij.process.FloatProcessor: Returns the value of the pixel at (x,y) as a float.
getPixelValue(int, int) - Method in class ij.process.ImageProcessor: Returns the value of the pixel at (x,y).
getPixelValue(int, int) - Method in class ij.process.ShortProcessor: Returns the value of the pixel at (x,y) as a float.
getPixelWidth() - Method in class skyview.executive.Imager: Get the width of the output image in pixels
getPlotSize() - Method in class ij.gui.ProfilePlot: Returns the size of the plot that createWindow() creates.
getPlugins() - Static method in class ij.Menus: Returns a list of the plugins in the plugins menu.
getPlugInsPath() - Static method in class ij.Menus: Returns the path to the user plugins directory or null if the plugins directory was not found.
getPolygon() - Method in class ij.gui.Line
getPolygon() - Method in class ij.gui.OvalRoi: Returns this OvalRoi as a polygon.
getPolygon() - Method in class ij.gui.PolygonRoi: Returns this PolygonRoi as a Polygon.
getPolygon() - Method in class ij.gui.Roi: Returns the outline of this selection as a Polygon, or null if this is a straight line selection.
getPopupMenu() - Static method in class ij.Menus
getPort() - Static method in class ij.ImageJ: Returns the port that ImageJ checks on startup to see if another instance is running.
getPosition() - Method in class skyview.request.SourceCoordinates: Get the position associated with these coordinates.
getPositions() - Method in class skyview.vo.ConeQuerier: Get the array of position
getPowerSpectrum() - Method in class ij.process.FHT: Returns an 8-bit power spectrum, log-scaled to 1-254.
getPrecision() - Static method in class ij.plugin.filter.Analyzer: Returns the number of digits displayed to the right of decimal point.
getPreferredLocation() - Method in class ij.ImageJ
getPreferredSize() - Method in class ij.gui.ImageCanvas
getPreferredSize() - Method in class ij.gui.MultiLineLabel
getPreferredSize() - Method in class ij.gui.ProgressBar
getPreferredSize() - Method in class ij.gui.Toolbar
getPreferredSize() - Method in class ij.gui.TrimmedButton
getProcessor() - Method in class ij.gui.Plot: Returns the plot as an ImageProcessor.
getProcessor() - Method in class ij.ImagePlus: Returns a reference to the current ImageProcessor.
getProcessor(int) - Method in class ij.ImageStack: Returns an ImageProcessor for the specified slice, were 1<=n<=nslices.
getProfile() - Method in class ij.gui.ProfilePlot: Returns the profile plot data.
getProgram() - Method in class ij.plugin.MacroInstaller
getProgressBar() - Method in class ij.ImageJ
getProjecter() - Method in class skyview.geometry.Projection: Get the projection algorithm associated with this rotation.
getProjection() - Method in class ij.plugin.ZProjector: Retrieve results of most recent projection operation.
getProjection() - Method in class skyview.geometry.WCS: Get the projection used in the WCS
getProperties() - Method in class ij.ImagePlus: Returns this image's Properties.
getProperty(String) - Method in class ij.ImagePlus: Returns the property associated with 'key'.
getQuality() - Static method in class ij.plugin.JpegWriter
getRange() - Method in class skyview.data.Contourer
getRawElement(int, int) - Method in class nom.tam.fits.BinaryTable: Get a particular element from the table but do no processing of this element (e.g., dimension conversion or extraction of variable length array elements/)
getRawLength() - Method in class ij.gui.Line: Returns the length of this line in pixels.
getRawValue(double) - Method in class ij.measure.Calibration: Converts a density calibrated value into a raw pixel value.
getRedirectImage(ImagePlus) - Static method in class ij.plugin.filter.Analyzer: Returns the image selected in the "Redirect To:" popup menu of the Analyze/Set Measurements dialog or null if "None" is selected, the image was not found or the image is not the same size as currentImage.
getReds() - Method in class ij.LookUpTable
getReference() - Method in class nom.tam.fits.BasicHDU: Return the citation of a reference where the data associated with this header are published.
getRegime(String) - Static method in class skyview.survey.XMLSurveyDescription
getResiduals() - Method in class ij.measure.CurveFitter: Returns residuals array ie.
getResource(String) - Method in class ij.io.PluginClassLoader: Returns a resource from the path or JAR files as a URL
getResourceAsStream(String) - Method in class ij.io.PluginClassLoader: Returns a resource from the path or JAR files as an InputStream
getResourceOrFile(String) - Static method in class skyview.survey.Util: Open a stream from a resource or a file.
getRestarts() - Method in class ij.measure.CurveFitter: Get number of simplex restarts to do
getResultsTable() - Static method in class ij.measure.ResultsTable: Returns the ResultsTable used by the Measure command.
getResultsTable() - Static method in class ij.plugin.filter.Analyzer: Returns the ImageJ results table.
getResultString() - Method in class ij.measure.CurveFitter: Get a string description of the curve fitting results for easy output.
getRGB(byte[], byte[], byte[]) - Method in class ij.process.ColorProcessor: Returns the red, green and blue planes as 3 byte arrays.
getRGBRow(ImageStack, int, int, int, int, int, int[]) - Method in class ij.plugin.filter.Projector
getRoi() - Method in class ij.ImagePlus
getRoi() - Method in class ij.ImageStack
getRoi() - Method in class ij.io.RoiDecoder: Returns the ROI.
getRoi() - Method in class ij.process.ImageProcessor: Returns a Rectangle that represents the current region of interest.
getRois() - Method in class ij.gui.ShapeRoi: Converts a Shape into Roi object(s).
getROIs() - Method in class ij.plugin.frame.RoiManager: Returns the ROI Hashtable.
getRoot() - Method in class ij.plugin.ControlPanel
getRotater() - Method in class skyview.geometry.CoordinateSystem: Get the rotation associated with the projection.
getRotater() - Method in class skyview.geometry.csys.BesselianCoordinateSystem
getRotater() - Method in class skyview.geometry.csys.EclipticCoordinateSystem
getRotater() - Method in class skyview.geometry.csys.GalacticCoordinateSystem: Return the rotation associated with the coordinate system.
getRotater() - Method in class skyview.geometry.csys.ICRSCoordinateSystem: Return the rotation associated with the coordinate system.
getRotater() - Method in class skyview.geometry.csys.JulianCoordinateSystem: Return the rotation associated with the coordinate system.
getRotater() - Method in class skyview.geometry.Projection: Get the rotation that needs to be performed before the rotation.
getRow(int, int, int[], int) - Method in class ij.process.ImageProcessor: Returns the pixel values along the horizontal line starting at (x,y).
getRow(int) - Method in class nom.tam.fits.AsciiTable: Get a row.
getRow(int) - Method in class nom.tam.fits.BinaryTable: Get a given row
getRow(int) - Method in interface nom.tam.fits.TableData
getRow(int) - Method in class nom.tam.fits.TableHDU
getRow(int) - Method in class nom.tam.util.ColumnTable: Get a row of data.
getRow(int) - Method in interface nom.tam.util.DataTable
getRowAsString(int) - Method in class ij.measure.ResultsTable: Returns a tab-delimited string representing the given row, where 0<=row<=counter-1.
getRowLen() - Method in class nom.tam.fits.AsciiTable: Get the number of bytes in a row
getRSquared() - Method in class ij.measure.CurveFitter: Returns R^2, where 1.0 is best.
getSamplerName() - Method in class skyview.executive.Imager: Get the sampler name.
getSavedImages() - Static method in class skyview.ij.IJProcessor
getScale() - Method in class skyview.data.Gridder
getScale() - Method in class skyview.geometry.WCS: Get the nominal scale of the WCS.
getScaler() - Method in class skyview.executive.Imager: Get the Scaler used for the output image.
getScaler() - Method in class skyview.geometry.WCS: Get the linear scaler used in the projection
getSD() - Method in class ij.measure.CurveFitter: SD = sqrt(sum of residuals squared / number of params+1)
getSD() - Static method in class ij.plugin.filter.Filters: Returns the default standard deviation used by Process/Noise/Add Specified Noise.
getSelectionEnd() - Method in class ij.text.TextPanel: Returns the index of the last selected line, or -1 if there is no slection.
getSelectionStart() - Method in class ij.text.TextPanel: Returns the index of the first selected line, or -1 if there is no slection.
getShapeAsArray() - Method in class ij.gui.ShapeRoi: Retrieves the end points and control points of the path as a float array.
getShapeRoi() - Method in class ij.io.RoiDecoder
getShortcuts() - Static method in class ij.Menus: Returns the hashtable that associates shortcuts with commands.
getShortSliceLabel(int) - Method in class ij.ImageStack: Returns a shortened version (up to the first 60 characters or first newline and suffix removed) of the label of the specified slice.
getShortTitle() - Method in class ij.ImagePlus: Returns a shortened version of image name that does not include spaces or a file name extension.
getShowAllROIs() - Method in class ij.gui.ImageCanvas
getSIA() - Static method in class skyview.sia.SIA
getSize() - Static method in class ij.gui.TextRoi: Returns the current font size.
getSize() - Method in class ij.ImageStack: Returns the number of slices in this stack.
getSize() - Method in class nom.tam.fits.BasicHDU: Get the total size in bytes of the HDU.
getSize() - Method in class nom.tam.fits.Data: Get the size of the data element in bytes
getSize() - Method in interface nom.tam.fits.FitsElement: The size of this element in bytes
getSize() - Method in class nom.tam.fits.FitsHeap: Return the size of the heap using the more bean compatbile format
getSize() - Method in class nom.tam.fits.Header: Get the size of the header in bytes
getSize() - Method in class skyview.vo.ConeQuerier: Get the size of the request
getSizes() - Method in class nom.tam.fits.BinaryTable
getSizes() - Method in class nom.tam.util.ColumnTable
getSliceLabel(int) - Method in class ij.ImageStack: Returns the label of the specified slice, were 1<=n<=nslices.
getSliceLabels() - Method in class ij.ImageStack: Returns the slice labels as an array of Strings.
getSliders() - Method in class ij.gui.GenericDialog: Returns the sliders (Scrollbars).
getSnapshotPixels() - Method in class ij.process.ColorProcessor: Returns a reference to the snapshot pixel array.
getSphereDistorter() - Method in class skyview.geometry.CoordinateSystem: Get the distortion associated with the projection.
getSphereDistorter() - Method in class skyview.geometry.csys.BesselianCoordinateSystem
getSrcRect() - Method in class ij.gui.ImageCanvas
getStack() - Method in class ij.ImagePlus: Returns the image stack.
getStackSize() - Method in class ij.ImagePlus: If this is a stack, returns the number of slices, else returns 1.
getStartTime() - Method in class ij.ImagePlus: Returns the time in milliseconds when startTiming() was last called.
getState() - Method in class ij.gui.Roi
getStatistics() - Method in class ij.ImagePlus: Returns an ImageStatistics object generated using the standard measurement options (area, mean, mode, min and max).
getStatistics(int) - Method in class ij.ImagePlus: Returns an ImageStatistics object generated using the specified measurement options.
getStatistics(int, int) - Method in class ij.ImagePlus: Returns an ImageStatistics object generated using the specified measurement options and histogram bin count.
getStatistics(int, int, double, double) - Method in class ij.ImagePlus: Returns an ImageStatistics object generated using the specified measurement options, histogram bin count and histogram range.
getStatistics(ImageProcessor, int, Calibration) - Static method in class ij.process.ImageStatistics
getStatus() - Static method in class skyview.process.imagefinder.Checker
getStatus() - Static method in class skyview.sia.Checker
getStream() - Method in class nom.tam.fits.Fits: Get the data stream used for the Fits Data.
getString(String, String) - Static method in class ij.IJ: Allows the user to enter a string in a dialog box.
getString(String) - Static method in class ij.Prefs: Finds an string in IJ_Props or IJ_Prefs.txt.
getString(String, String) - Static method in class ij.Prefs: Finds an string in IJ_Props or IJ_Prefs.txt.
getString(int) - Method in class nom.tam.util.ByteParser: Get a string
getStringFields() - Method in class ij.gui.GenericDialog: Returns the Vector containing the string TextFields.